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Pan-Enterovirus Amplicon-Based High-Throughput Sequencing Detects the Complete Capsid of a EVA71 Genotype C1 Variant via Wastewater-Based Epidemiology in Arizona.
Faleye, Temitope O C; Driver, Erin; Bowes, Devin; Adhikari, Sangeet; Adams, Deborah; Varsani, Arvind; Halden, Rolf U; Scotch, Matthew.
  • Faleye TOC; Biodesign Center for Environmental Health Engineering, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA.
  • Driver E; Biodesign Center for Environmental Health Engineering, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA.
  • Bowes D; Biodesign Center for Environmental Health Engineering, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA.
  • Adhikari S; Biodesign Center for Environmental Health Engineering, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA.
  • Adams D; Biodesign Center for Personalized Diagnostics, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA.
  • Varsani A; Biodesign Center for Fundamental and Applied Microbiomics, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA.
  • Halden RU; Biodesign Center for Environmental Health Engineering, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA.
  • Scotch M; OneWaterOneHealth, Nonprofit Project of the Arizona State University Foundation, Tempe, AZ 85287, USA;.
Viruses ; 13(1)2021 Jan 07.
Article in English | MEDLINE | ID: covidwho-1389524
ABSTRACT
We describe the complete capsid of a genotype C1-like Enterovirus A71 variant recovered from wastewater in a neighborhood in the greater Tempe, Arizona area (Southwest United States) in May 2020 using a pan-enterovirus amplicon-based high-throughput sequencing strategy. The variant seems to have been circulating for over two years, but its sequence has not been documented in that period. As the SARS-CoV-2 pandemic has resulted in changes in health-seeking behavior and overwhelmed pathogen diagnostics, our findings highlight the importance of wastewater-based epidemiology (WBE ) as an early warning system for virus surveillance.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: Enterovirus A, Human / Capsid Proteins / High-Throughput Nucleotide Sequencing / Wastewater / Wastewater-Based Epidemiological Monitoring Type of study: Observational study / Randomized controlled trials Topics: Variants Limits: Humans Country/Region as subject: North America Language: English Year: 2021 Document Type: Article Affiliation country: V13010074

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Full text: Available Collection: International databases Database: MEDLINE Main subject: Enterovirus A, Human / Capsid Proteins / High-Throughput Nucleotide Sequencing / Wastewater / Wastewater-Based Epidemiological Monitoring Type of study: Observational study / Randomized controlled trials Topics: Variants Limits: Humans Country/Region as subject: North America Language: English Year: 2021 Document Type: Article Affiliation country: V13010074