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Federated learning for predicting clinical outcomes in patients with COVID-19.
Dayan, Ittai; Roth, Holger R; Zhong, Aoxiao; Harouni, Ahmed; Gentili, Amilcare; Abidin, Anas Z; Liu, Andrew; Costa, Anthony Beardsworth; Wood, Bradford J; Tsai, Chien-Sung; Wang, Chih-Hung; Hsu, Chun-Nan; Lee, C K; Ruan, Peiying; Xu, Daguang; Wu, Dufan; Huang, Eddie; Kitamura, Felipe Campos; Lacey, Griffin; de Antônio Corradi, Gustavo César; Nino, Gustavo; Shin, Hao-Hsin; Obinata, Hirofumi; Ren, Hui; Crane, Jason C; Tetreault, Jesse; Guan, Jiahui; Garrett, John W; Kaggie, Joshua D; Park, Jung Gil; Dreyer, Keith; Juluru, Krishna; Kersten, Kristopher; Rockenbach, Marcio Aloisio Bezerra Cavalcanti; Linguraru, Marius George; Haider, Masoom A; AbdelMaseeh, Meena; Rieke, Nicola; Damasceno, Pablo F; E Silva, Pedro Mario Cruz; Wang, Pochuan; Xu, Sheng; Kawano, Shuichi; Sriswasdi, Sira; Park, Soo Young; Grist, Thomas M; Buch, Varun; Jantarabenjakul, Watsamon; Wang, Weichung; Tak, Won Young.
  • Dayan I; MGH Radiology and Harvard Medical School, Boston, MA, USA.
  • Roth HR; NVIDIA, Santa Clara, CA, USA.
  • Zhong A; Center for Advanced Medical Computing and Analysis, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
  • Harouni A; School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.
  • Gentili A; NVIDIA, Santa Clara, CA, USA.
  • Abidin AZ; San Diego VA Health Care System, San Diego, CA, USA.
  • Liu A; NVIDIA, Santa Clara, CA, USA.
  • Costa AB; NVIDIA, Santa Clara, CA, USA.
  • Wood BJ; Department of Neurosurgery, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
  • Tsai CS; Radiology & Imaging Sciences/Clinical Center, National Institutes of Health, Bethesda, MD, USA.
  • Wang CH; National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
  • Hsu CN; Division of Cardiovascular Surgery, Department of Surgery, Tri-Service General Hospital, National Defense Medical Center, Taipei, Taiwan.
  • Lee CK; Department of Otolaryngology-Head and Neck Surgery, Tri-Service General Hospital, National Defense Medical Center, Taipei, Taiwan.
  • Ruan P; Graduate Institute of Medical Sciences, National Defense Medical Center, Taipei, Taiwan.
  • Xu D; Center for Research in Biological Systems, University of California, San Diego, CA, USA.
  • Wu D; NVIDIA, Santa Clara, CA, USA.
  • Huang E; NVIDIA, Santa Clara, CA, USA.
  • Kitamura FC; NVIDIA, Santa Clara, CA, USA.
  • Lacey G; Center for Advanced Medical Computing and Analysis, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
  • de Antônio Corradi GC; NVIDIA, Santa Clara, CA, USA.
  • Nino G; DasaInova, Diagnósticos da América SA, Barueri, Brazil.
  • Shin HH; NVIDIA, Santa Clara, CA, USA.
  • Obinata H; DasaInova, Diagnósticos da América SA, Barueri, Brazil.
  • Ren H; Division of Pediatric Pulmonary and Sleep Medicine, Children's National Hospital, Washington, DC, USA.
  • Crane JC; Memorial Sloan Kettering Cancer Center, New York, NY, USA.
  • Tetreault J; Self-Defense Forces Central Hospital, Tokyo, Japan.
  • Guan J; Center for Advanced Medical Computing and Analysis, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
  • Garrett JW; Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA.
  • Kaggie JD; NVIDIA, Santa Clara, CA, USA.
  • Park JG; NVIDIA, Santa Clara, CA, USA.
  • Dreyer K; Departments of Radiology and Medical Physics, The University of Wisconsin-Madison School of Medicine and Public Health, Madison, WI, USA.
  • Juluru K; Department of Radiology, NIHR Cambridge Biomedical Resource Centre, University of Cambridge, Cambridge, UK.
  • Kersten K; Department of Internal Medicine, Yeungnam University College of Medicine, Daegu, South Korea.
  • Rockenbach MABC; MGH Radiology and Harvard Medical School, Boston, MA, USA.
  • Linguraru MG; Center for Clinical Data Science, Massachusetts General Brigham, Boston, MA, USA.
  • Haider MA; Memorial Sloan Kettering Cancer Center, New York, NY, USA.
  • AbdelMaseeh M; NVIDIA, Santa Clara, CA, USA.
  • Rieke N; Center for Clinical Data Science, Massachusetts General Brigham, Boston, MA, USA.
  • Damasceno PF; Sheikh Zayed Institute for Pediatric Surgical Innovation, Children's National Hospital, Washington, DC, USA.
  • E Silva PMC; Departments of Radiology and Pediatrics, The George Washington University School of Medicine and Health Sciences, Washington, DC, USA.
  • Wang P; Joint Dept. of Medical Imaging, Sinai Health System, University of Toronto, Toronto, Ontario, Canada.
  • Xu S; Lunenfeld-Tanenbaum Research Institute, Toronto, Ontario, Canada.
  • Kawano S; Lunenfeld-Tanenbaum Research Institute, Toronto, Ontario, Canada.
  • Sriswasdi S; NVIDIA, Santa Clara, CA, USA.
  • Park SY; Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA.
  • Grist TM; NVIDIA, Santa Clara, CA, USA.
  • Buch V; MeDA Lab Institute of Applied Mathematical Sciences, National Taiwan University, Taipei, Taiwan.
  • Jantarabenjakul W; Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan.
  • Wang W; Radiology & Imaging Sciences/Clinical Center, National Institutes of Health, Bethesda, MD, USA.
  • Tak WY; National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Nat Med ; 27(10): 1735-1743, 2021 10.
Article in English | MEDLINE | ID: covidwho-1412139
ABSTRACT
Federated learning (FL) is a method used for training artificial intelligence models with data from multiple sources while maintaining data anonymity, thus removing many barriers to data sharing. Here we used data from 20 institutes across the globe to train a FL model, called EXAM (electronic medical record (EMR) chest X-ray AI model), that predicts the future oxygen requirements of symptomatic patients with COVID-19 using inputs of vital signs, laboratory data and chest X-rays. EXAM achieved an average area under the curve (AUC) >0.92 for predicting outcomes at 24 and 72 h from the time of initial presentation to the emergency room, and it provided 16% improvement in average AUC measured across all participating sites and an average increase in generalizability of 38% when compared with models trained at a single site using that site's data. For prediction of mechanical ventilation treatment or death at 24 h at the largest independent test site, EXAM achieved a sensitivity of 0.950 and specificity of 0.882. In this study, FL facilitated rapid data science collaboration without data exchange and generated a model that generalized across heterogeneous, unharmonized datasets for prediction of clinical outcomes in patients with COVID-19, setting the stage for the broader use of FL in healthcare.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: Outcome Assessment, Health Care / Machine Learning / COVID-19 Type of study: Prognostic study Limits: Humans Language: English Journal: Nat Med Journal subject: Molecular Biology / Medicine Year: 2021 Document Type: Article Affiliation country: S41591-021-01506-3

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Full text: Available Collection: International databases Database: MEDLINE Main subject: Outcome Assessment, Health Care / Machine Learning / COVID-19 Type of study: Prognostic study Limits: Humans Language: English Journal: Nat Med Journal subject: Molecular Biology / Medicine Year: 2021 Document Type: Article Affiliation country: S41591-021-01506-3