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Drug repurposing for coronavirus (SARS-CoV-2) based on gene co-expression network analysis.
MotieGhader, Habib; Safavi, Esmaeil; Rezapour, Ali; Amoodizaj, Fatemeh Firouzi; Iranifam, Roya Asl.
  • MotieGhader H; Department of Basic Sciences, Biotechnology Research Center, Tabriz Branch, Islamic Azad University, Tabriz, Iran. habib_moti@ut.ac.ir.
  • Safavi E; Department of Biology, Tabriz Branch, Islamic Azad University, Tabriz, Iran. habib_moti@ut.ac.ir.
  • Rezapour A; Department of Basic Sciences, Biotechnology Research Center, Tabriz Branch, Islamic Azad University, Tabriz, Iran.
  • Amoodizaj FF; Department of Basic Sciences, Faculty of Veterinary Medicine, Tabriz Branch, Islamic Azad University, Tabriz, Iran.
  • Iranifam RA; Department of Animal Science, Faculty of Agriculture, Tabriz Branch, Islamic Azad University, Tabriz, Iran.
Sci Rep ; 11(1): 21872, 2021 11 08.
Article in English | MEDLINE | ID: covidwho-1506466
ABSTRACT
Severe acute respiratory syndrome (SARS) is a highly contagious viral respiratory illness. This illness is spurred on by a coronavirus known as SARS-associated coronavirus (SARS-CoV). SARS was first detected in Asia in late February 2003. The genome of this virus is very similar to the SARS-CoV-2. Therefore, the study of SARS-CoV disease and the identification of effective drugs to treat this disease can be new clues for the treatment of SARS-Cov-2. This study aimed to discover novel potential drugs for SARS-CoV disease in order to treating SARS-Cov-2 disease based on a novel systems biology approach. To this end, gene co-expression network analysis was applied. First, the gene co-expression network was reconstructed for 1441 genes, and then two gene modules were discovered as significant modules. Next, a list of miRNAs and transcription factors that target gene co-expression modules' genes were gathered from the valid databases, and two sub-networks formed of transcription factors and miRNAs were established. Afterward, the list of the drugs targeting obtained sub-networks' genes was retrieved from the DGIDb database, and two drug-gene and drug-TF interaction networks were reconstructed. Finally, after conducting different network analyses, we proposed five drugs, including FLUOROURACIL, CISPLATIN, SIROLIMUS, CYCLOPHOSPHAMIDE, and METHYLDOPA, as candidate drugs for SARS-CoV-2 coronavirus treatment. Moreover, ten miRNAs including miR-193b, miR-192, miR-215, miR-34a, miR-16, miR-16, miR-92a, miR-30a, miR-7, and miR-26b were found to be significant miRNAs in treating SARS-CoV-2 coronavirus.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: Gene Expression Regulation, Viral / Gene Expression Profiling / Drug Repositioning / SARS-CoV-2 / COVID-19 / COVID-19 Drug Treatment Limits: Humans Language: English Journal: Sci Rep Year: 2021 Document Type: Article Affiliation country: S41598-021-01410-3

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Full text: Available Collection: International databases Database: MEDLINE Main subject: Gene Expression Regulation, Viral / Gene Expression Profiling / Drug Repositioning / SARS-CoV-2 / COVID-19 / COVID-19 Drug Treatment Limits: Humans Language: English Journal: Sci Rep Year: 2021 Document Type: Article Affiliation country: S41598-021-01410-3