PDBsum extras: SARS-CoV-2 and AlphaFold models.
Protein Sci
; 31(1): 283-289, 2022 01.
Article
in English
| MEDLINE | ID: covidwho-1516798
ABSTRACT
The PDBsum web server provides structural analyses of the entries in the Protein Data Bank (PDB). Two recent additions are described here. The first is the detailed analysis of the SARS-CoV-2 virus protein structures in the PDB. These include the variants of concern, which are shown both on the sequences and 3D structures of the proteins. The second addition is the inclusion of the available AlphaFold models for human proteins. The pages allow a search of the protein against existing structures in the PDB via the Sequence Annotated by Structure (SAS) server, so one can easily compare the predicted model against experimentally determined structures. The server is freely accessible to all at http//www.ebi.ac.uk/pdbsum.
Keywords
Full text:
Available
Collection:
International databases
Database:
MEDLINE
Main subject:
Viral Proteins
/
Proteins
/
Databases, Protein
/
SARS-CoV-2
Type of study:
Prognostic study
Topics:
Variants
Limits:
Animals
/
Humans
Language:
English
Journal:
Protein Sci
Journal subject:
Biochemistry
Year:
2022
Document Type:
Article
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