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SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction.
Huang, Yihan; Harris, Bradley S; Minami, Shiaki A; Jung, Seongwon; Shah, Priya S; Nandi, Somen; McDonald, Karen A; Faller, Roland.
  • Huang Y; Department of Materials Science, UC Davis, Davis, California.
  • Harris BS; Department of Chemical Engineering, UC Davis, Davis, California.
  • Minami SA; Department of Chemical Engineering, UC Davis, Davis, California.
  • Jung S; Department of Chemical Engineering, UC Davis, Davis, California.
  • Shah PS; Department of Chemical Engineering, UC Davis, Davis, California; Department of Microbiology and Molecular Genetics, UC Davis, Davis, California.
  • Nandi S; Department of Chemical Engineering, UC Davis, Davis, California; Global HealthShare Initiative, UC Davis, Davis, California.
  • McDonald KA; Department of Chemical Engineering, UC Davis, Davis, California; Global HealthShare Initiative, UC Davis, Davis, California.
  • Faller R; Department of Chemical Engineering, UC Davis, Davis, California. Electronic address: rfaller@ucdavis.edu.
Biophys J ; 121(1): 79-90, 2022 01 04.
Article in English | MEDLINE | ID: covidwho-1556984
ABSTRACT
Highly detailed steered molecular dynamics simulations are performed on differently glycosylated receptor binding domains of the severe acute respiratory syndrome coronavirus-2 spike protein. The binding strength and the binding range increase with glycosylation. The interaction energy rises very quickly when pulling the proteins apart and only slowly drops at larger distances. We see a catch-slip-type behavior whereby interactions during pulling break and are taken over by new interactions forming. The dominant interaction mode is hydrogen bonds, but Lennard-Jones and electrostatic interactions are relevant as well.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: SARS-CoV-2 / COVID-19 Limits: Humans Language: English Journal: Biophys J Year: 2022 Document Type: Article

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Full text: Available Collection: International databases Database: MEDLINE Main subject: SARS-CoV-2 / COVID-19 Limits: Humans Language: English Journal: Biophys J Year: 2022 Document Type: Article