Your browser doesn't support javascript.
OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies.
Moore, Josh; Allan, Chris; Besson, Sébastien; Burel, Jean-Marie; Diel, Erin; Gault, David; Kozlowski, Kevin; Lindner, Dominik; Linkert, Melissa; Manz, Trevor; Moore, Will; Pape, Constantin; Tischer, Christian; Swedlow, Jason R.
  • Moore J; University of Dundee, Dundee, UK.
  • Allan C; Glencoe Software, Inc., Seattle, WA, USA.
  • Besson S; University of Dundee, Dundee, UK.
  • Burel JM; University of Dundee, Dundee, UK.
  • Diel E; Glencoe Software, Inc., Seattle, WA, USA.
  • Gault D; University of Dundee, Dundee, UK.
  • Kozlowski K; Glencoe Software, Inc., Seattle, WA, USA.
  • Lindner D; University of Dundee, Dundee, UK.
  • Linkert M; Glencoe Software, Inc., Seattle, WA, USA.
  • Manz T; Harvard Medical School, Boston, MA, USA.
  • Moore W; University of Dundee, Dundee, UK.
  • Pape C; European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
  • Tischer C; European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
  • Swedlow JR; University of Dundee, Dundee, UK. j.r.swedlow@dundee.ac.uk.
Nat Methods ; 18(12): 1496-1498, 2021 12.
Article in English | MEDLINE | ID: covidwho-1612200
ABSTRACT
The rapid pace of innovation in biological imaging and the diversity of its applications have prevented the establishment of a community-agreed standardized data format. We propose that complementing established open formats such as OME-TIFF and HDF5 with a next-generation file format such as Zarr will satisfy the majority of use cases in bioimaging. Critically, a common metadata format used in all these vessels can deliver truly findable, accessible, interoperable and reusable bioimaging data.
Subject(s)
Fulltext
Print
XML
PubMed Links
Search on Google

Full text: Available Collection: International databases Database: MEDLINE Main subject: Software / Computational Biology / Metadata / Microscopy Type of study: Reviews Language: English Journal: Nat Methods Journal subject: Laboratory Techniques and procedures Year: 2021 Document Type: Article Affiliation country: S41592-021-01326-w

Similar

MEDLINE
LILACS
LIS
Fulltext
Print
XML
PubMed Links
Search on Google

Full text: Available Collection: International databases Database: MEDLINE Main subject: Software / Computational Biology / Metadata / Microscopy Type of study: Reviews Language: English Journal: Nat Methods Journal subject: Laboratory Techniques and procedures Year: 2021 Document Type: Article Affiliation country: S41592-021-01326-w