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COVIDSum: A linguistically enriched SciBERT-based summarization model for COVID-19 scientific papers.
Cai, Xiaoyan; Liu, Sen; Yang, Libin; Lu, Yan; Zhao, Jintao; Shen, Dinggang; Liu, Tianming.
  • Cai X; School of Automation, Northwestern Polytechnic University, Xi'an 710072, Shaanxi, People's Republic of China. Electronic address: xiaoyanc@nwpu.edu.cn.
  • Liu S; School of Automation, Northwestern Polytechnic University, Xi'an 710072, Shaanxi, People's Republic of China.
  • Yang L; School of Automation, Northwestern Polytechnic University, Xi'an 710072, Shaanxi, People's Republic of China.
  • Lu Y; Department of Cardiovascular Diseases, Xidian Group Hospital, Xi'an 710077, Shannxi, People's Republic of China.
  • Zhao J; School of Automation, Northwestern Polytechnic University, Xi'an 710072, Shaanxi, People's Republic of China.
  • Shen D; School of Biomedical Engineering, ShanghaiTech University, Shanghai 201210, People's Republic of China.
  • Liu T; Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, University of Georgia, Athens, GA 30602, USA.
J Biomed Inform ; 127: 103999, 2022 03.
Article in English | MEDLINE | ID: covidwho-1654687
ABSTRACT
The coronavirus disease (COVID-19) has claimed the lives of over 350,000 people and infected more than 173 million people worldwide, it triggers researchers from diverse fields are accelerating their research to help diagnostics, therapies, and vaccines. Researchers also publish their recent research progress through scientific papers. However, manually writing the abstract of a paper is time-consuming, and it increases the writing burden of the researchers. Abstractive summarization technique which automatically provides researchers reliable draft abstracts, can alleviate this problem. In this work, we propose a linguistically enriched SciBERT-based summarization model for COVID-19 scientific papers, named COVIDSum. Specifically, we first extract salient sentences from source papers and construct word co-occurrence graphs. Then, we adopt a SciBERT-based sequence encoder and a Graph Attention Networks-based graph encoder to encode sentences and word co-occurrence graphs, respectively. Finally, we fuse the above two encodings and generate an abstractive summary of each scientific paper. When evaluated on the publicly available COVID-19 open research dataset, the performance of our proposed model achieves significant improvement compared with other document summarization models.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: COVID-19 Type of study: Experimental Studies Topics: Vaccines Limits: Humans Language: English Journal: J Biomed Inform Journal subject: Medical Informatics Year: 2022 Document Type: Article

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Full text: Available Collection: International databases Database: MEDLINE Main subject: COVID-19 Type of study: Experimental Studies Topics: Vaccines Limits: Humans Language: English Journal: J Biomed Inform Journal subject: Medical Informatics Year: 2022 Document Type: Article