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DLMM as a lossless one-shot algorithm for collaborative multi-site distributed linear mixed models.
Luo, Chongliang; Islam, Md Nazmul; Sheils, Natalie E; Buresh, John; Reps, Jenna; Schuemie, Martijn J; Ryan, Patrick B; Edmondson, Mackenzie; Duan, Rui; Tong, Jiayi; Marks-Anglin, Arielle; Bian, Jiang; Chen, Zhaoyi; Duarte-Salles, Talita; Fernández-Bertolín, Sergio; Falconer, Thomas; Kim, Chungsoo; Park, Rae Woong; Pfohl, Stephen R; Shah, Nigam H; Williams, Andrew E; Xu, Hua; Zhou, Yujia; Lautenbach, Ebbing; Doshi, Jalpa A; Werner, Rachel M; Asch, David A; Chen, Yong.
  • Luo C; Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, USA.
  • Islam MN; Division of Public Health Sciences, Washington University School of Medicine in St. Louis, St. Louis, MO, USA.
  • Sheils NE; Optum Labs, Minnetonka, MN, USA.
  • Buresh J; Optum Labs, Minnetonka, MN, USA.
  • Reps J; Optum Labs, Minnetonka, MN, USA.
  • Schuemie MJ; Janssen Research and Development LLC, Titusville, NJ, USA.
  • Ryan PB; Janssen Research and Development LLC, Titusville, NJ, USA.
  • Edmondson M; Janssen Research and Development LLC, Titusville, NJ, USA.
  • Duan R; Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, USA.
  • Tong J; Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, USA.
  • Marks-Anglin A; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.
  • Bian J; Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, USA.
  • Chen Z; Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, USA.
  • Duarte-Salles T; Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA.
  • Fernández-Bertolín S; Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA.
  • Falconer T; Fundacio Institut Universitari per a la recerca a l'Atencio Primaria de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain.
  • Kim C; Fundacio Institut Universitari per a la recerca a l'Atencio Primaria de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain.
  • Park RW; Department of Biomedical Informatics, Columbia University, New York, NY, USA.
  • Pfohl SR; Department of Biomedical Sciences, Ajou University Graduate School of Medicine, Suwon, Republic of Korea.
  • Shah NH; Department of Biomedical Sciences, Ajou University Graduate School of Medicine, Suwon, Republic of Korea.
  • Williams AE; Department of Biomedical Informatics, Ajou University School of Medicine, Suwon, Republic of Korea.
  • Xu H; Stanford Center for Biomedical Informatics Research, Stanford, CA, USA.
  • Zhou Y; Stanford Center for Biomedical Informatics Research, Stanford, CA, USA.
  • Lautenbach E; Institute for Clinical Research and Health Policy Studies, Tufts University School of Medicine, Boston, MA, USA.
  • Doshi JA; School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA.
  • Werner RM; School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA.
  • Asch DA; Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, USA.
  • Chen Y; Division of Infectious Diseases, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Nat Commun ; 13(1): 1678, 2022 03 30.
Article in English | MEDLINE | ID: covidwho-1768824
ABSTRACT
Linear mixed models are commonly used in healthcare-based association analyses for analyzing multi-site data with heterogeneous site-specific random effects. Due to regulations for protecting patients' privacy, sensitive individual patient data (IPD) typically cannot be shared across sites. We propose an algorithm for fitting distributed linear mixed models (DLMMs) without sharing IPD across sites. This algorithm achieves results identical to those achieved using pooled IPD from multiple sites (i.e., the same effect size and standard error estimates), hence demonstrating the lossless property. The algorithm requires each site to contribute minimal aggregated data in only one round of communication. We demonstrate the lossless property of the proposed DLMM algorithm by investigating the associations between demographic and clinical characteristics and length of hospital stay in COVID-19 patients using administrative claims from the UnitedHealth Group Clinical Discovery Database. We extend this association study by incorporating 120,609 COVID-19 patients from 11 collaborative data sources worldwide.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: COVID-19 Type of study: Observational study / Prognostic study / Randomized controlled trials Topics: Vaccines Limits: Humans Language: English Journal: Nat Commun Journal subject: Biology / Science Year: 2022 Document Type: Article Affiliation country: S41467-022-29160-4

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Full text: Available Collection: International databases Database: MEDLINE Main subject: COVID-19 Type of study: Observational study / Prognostic study / Randomized controlled trials Topics: Vaccines Limits: Humans Language: English Journal: Nat Commun Journal subject: Biology / Science Year: 2022 Document Type: Article Affiliation country: S41467-022-29160-4