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Estimating the COVID-19 infection fatality ratio accounting for seroreversion using statistical modelling.
Brazeau, Nicholas F; Verity, Robert; Jenks, Sara; Fu, Han; Whittaker, Charles; Winskill, Peter; Dorigatti, Ilaria; Walker, Patrick G T; Riley, Steven; Schnekenberg, Ricardo P; Hoeltgebaum, Henrique; Mellan, Thomas A; Mishra, Swapnil; Unwin, H Juliette T; Watson, Oliver J; Cucunubá, Zulma M; Baguelin, Marc; Whittles, Lilith; Bhatt, Samir; Ghani, Azra C; Ferguson, Neil M; Okell, Lucy C.
  • Brazeau NF; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Verity R; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Jenks S; Department of Clinical Biochemistry, Royal Infirmary of Edinburgh, Edinburgh, UK.
  • Fu H; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Whittaker C; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Winskill P; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Dorigatti I; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Walker PGT; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Riley S; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Schnekenberg RP; Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK.
  • Hoeltgebaum H; Department of Mathematics, Imperial College, London, UK.
  • Mellan TA; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Mishra S; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Unwin HJT; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Watson OJ; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Cucunubá ZM; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Baguelin M; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Whittles L; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Bhatt S; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Ghani AC; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Ferguson NM; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
  • Okell LC; MRC Centre for Global Infectious Disease Analysis; and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.
Commun Med (Lond) ; 2: 54, 2022.
Article in English | MEDLINE | ID: covidwho-1947549
ABSTRACT

Background:

The infection fatality ratio (IFR) is a key statistic for estimating the burden of coronavirus disease 2019 (COVID-19) and has been continuously debated throughout the COVID-19 pandemic. The age-specific IFR can be quantified using antibody surveys to estimate total infections, but requires consideration of delay-distributions from time from infection to seroconversion, time to death, and time to seroreversion (i.e. antibody waning) alongside serologic test sensitivity and specificity. Previous IFR estimates have not fully propagated uncertainty or accounted for these potential biases, particularly seroreversion.

Methods:

We built a Bayesian statistical model that incorporates these factors and applied this model to simulated data and 10 serologic studies from different countries.

Results:

We demonstrate that seroreversion becomes a crucial factor as time accrues but is less important during first-wave, short-term dynamics. We additionally show that disaggregating surveys by regions with higher versus lower disease burden can inform serologic test specificity estimates. The overall IFR in each setting was estimated at 0.49-2.53%.

Conclusion:

We developed a robust statistical framework to account for full uncertainties in the parameters determining IFR. We provide code for others to apply these methods to further datasets and future epidemics.
Keywords

Full text: Available Collection: International databases Database: MEDLINE Type of study: Diagnostic study / Observational study Language: English Journal: Commun Med (Lond) Year: 2022 Document Type: Article Affiliation country: S43856-022-00106-7

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Full text: Available Collection: International databases Database: MEDLINE Type of study: Diagnostic study / Observational study Language: English Journal: Commun Med (Lond) Year: 2022 Document Type: Article Affiliation country: S43856-022-00106-7