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PhyloView: A System to Visualize the Ecology of Infectious Diseases Using Phylogenetic Data
23rd IEEE International Conference on Mobile Data Management, MDM 2022 ; 2022-June:222-229, 2022.
Article in English | Scopus | ID: covidwho-2037827
ABSTRACT
Since the onset of the COVID-19 pandemic, mil-lions of coronavirus sequences have been rapidly deposited in publicly available repositories. The sequences have been used primarily to monitor the evolution and transmission of the virus. In addition, the data can be combined with spatiotemporal information and mapped over space and time to understand transmission dynamics further. For example, the first COVID-19 cases in Australia were genetically related to the dominant strain in Wuhan, China, and spread via international travel. These data are currently available through the Global Initiative on Sharing Avian Influenza Data (GISAID) yet generally remains an untapped resource for data scientists to analyze such multi-dimensional data. Therefore, in this study, we demonstrate a system named Phyloview, a highly interactive visual environment that can be used to examine the spatiotemporal evolution of COVID-19 (from-to) over time using the case study of Louisiana, USA. PhyloView (powered by ArcGIsInsights) facilitates the visualization and exploration of the different dimensions of the phylogenetic data and can be layered with other types of spatiotemporal data for further investigation. Our system has the potential to be shared as a model to be used by health officials that can access relevant data through GISAID, visualize, and analyze it. Such data is essential for a better understanding, predicting, and responding to infectious diseases. © 2022 IEEE.
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Full text: Available Collection: Databases of international organizations Database: Scopus Language: English Journal: 23rd IEEE International Conference on Mobile Data Management, MDM 2022 Year: 2022 Document Type: Article

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Full text: Available Collection: Databases of international organizations Database: Scopus Language: English Journal: 23rd IEEE International Conference on Mobile Data Management, MDM 2022 Year: 2022 Document Type: Article