Identification and analyses of the proteins interacting with the nucleocapsid protein of the Porcine Deltacoronavirus

ABSTRACT

Preliminary screening and identification of the host proteins interacting with the nucleocapsid(N)protein of the porcine deltacoronavirus(DCoV). Co-immunoprecipitation and liquid chromatography- tandem mass spectrometry were used to screen out the host proteins interacting with the N protein of the porcine DCoV. Bioinformatics analysis was carried out, and then co-immunoprecipitation was used for identification. Sodium dodecyl sulfate - polyacrylamide gel electrophoresis of the immunoprecipitation products revealed different protein bands around 40 kDa and 100 kDa. Sixty-eight host proteins interacting with the N protein of the porcine DCoV were screened by mass spectrometry. Two candidate interacting proteins(ANXA2 and TUBB2 B)were selected by analyses using the Gene Ontology, Clusters of Orthologous Groups, and Kyoto Encyclopedia of Genes and Genomes databases. After co-immunoprecipitation verification, the N protein of the porcine DCoV was found to interact with TUBB2 B. Our study provides a new direction for further exploration of the role of the N protein of the porcine DCoV in infection.