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Genome Sequencing of a Severe Acute Respiratory Syndrome Coronavirus 2 Isolate Obtained from a South African Patient with Coronavirus Disease 2019.
Allam, Mushal; Ismail, Arshad; Khumalo, Zamantungwa T H; Kwenda, Stanford; van Heusden, Peter; Cloete, Ruben; Wibmer, Constantinos Kurt; Mtshali, Phillip Senzo; Mnyameni, Florah; Mohale, Thabo; Subramoney, Kathleen; Walaza, Sibongile; Ngubane, Wendy; Govender, Nevashan; Motaze, Nkengafac V; Bhiman, Jinal N.
  • Allam M; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa mushala@nicd.ac.za.
  • Ismail A; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
  • Khumalo ZTH; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
  • Kwenda S; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
  • van Heusden P; South African Medical Research Council Bioinformatics Capacity Development Unit, South African National Bioinformatics Institute, University of the Western Cape, Cape Town, South Africa.
  • Cloete R; South African Medical Research Council Bioinformatics Capacity Development Unit, South African National Bioinformatics Institute, University of the Western Cape, Cape Town, South Africa.
  • Wibmer CK; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
  • Mtshali PS; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
  • Mnyameni F; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
  • Mohale T; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
  • Subramoney K; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
  • Walaza S; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
  • Ngubane W; School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
  • Govender N; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
  • Motaze NV; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
  • Bhiman JN; National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
Microbiol Resour Announc ; 9(27)2020 Jul 02.
Article in English | MEDLINE | ID: covidwho-630676
ABSTRACT
As a contribution to the global efforts to track and trace the ongoing coronavirus pandemic, here we present the sequence, phylogenetic analysis, and modeling of nonsynonymous mutations for a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome that was detected in a South African patient with coronavirus disease 2019 (COVID-19).
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Full text: Available Collection: International databases Database: MEDLINE Language: English Year: 2020 Document Type: Article Affiliation country: MRA.00572-20

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Full text: Available Collection: International databases Database: MEDLINE Language: English Year: 2020 Document Type: Article Affiliation country: MRA.00572-20