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Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020.
Alm, Erik; Broberg, Eeva K; Connor, Thomas; Hodcroft, Emma B; Komissarov, Andrey B; Maurer-Stroh, Sebastian; Melidou, Angeliki; Neher, Richard A; O'Toole, Áine; Pereyaslov, Dmitriy.
  • Alm E; The European Centre for Disease Prevention and Control, Stockholm, Sweden.
  • Broberg EK; The European Centre for Disease Prevention and Control, Stockholm, Sweden.
  • Connor T; Public Health Wales Microbiology, Cardiff, United Kingdom.
  • Hodcroft EB; Cardiff University School of Biosciences, Cardiff, United Kingdom.
  • Komissarov AB; Biozentrum, University of Basel, Basel, Switzerland.
  • Maurer-Stroh S; Smorodintsev Research Institute of Influenza, Saint Petersburg, Russian Federation.
  • Melidou A; Bioinformatics Institute, Agency for Science Technology and Research, Singapore, Singapore.
  • Neher RA; Department of Biological Sciences, National University of Singapore, Singapore, Singapore.
  • O'Toole Á; National Public Health Laboratory, National Centre for Infectious Diseases, Ministry of Health, Singapore, Singapore.
  • Pereyaslov D; Global Initiative on Sharing All Influenza Data (GISAID), Munich, Germany.
Euro Surveill ; 25(32)2020 Aug.
Article in English | MEDLINE | ID: covidwho-721443
ABSTRACT
We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: Pneumonia, Viral / RNA-Dependent RNA Polymerase / RNA, Viral / Genome, Viral / Coronavirus Infections / Coronavirus / Pandemics / Betacoronavirus Type of study: Observational study Limits: Humans Country/Region as subject: Europa Language: English Journal subject: Communicable Diseases Year: 2020 Document Type: Article Affiliation country: 1560-7917.ES.2020.25.32.2001410

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Full text: Available Collection: International databases Database: MEDLINE Main subject: Pneumonia, Viral / RNA-Dependent RNA Polymerase / RNA, Viral / Genome, Viral / Coronavirus Infections / Coronavirus / Pandemics / Betacoronavirus Type of study: Observational study Limits: Humans Country/Region as subject: Europa Language: English Journal subject: Communicable Diseases Year: 2020 Document Type: Article Affiliation country: 1560-7917.ES.2020.25.32.2001410