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Clustering and classification of virus sequence through music communication protocol and wavelet transform.
Paul, Tirthankar; Vainio, Seppo; Roning, Juha.
  • Paul T; InfoTech Oulu, Biomimetics and Intelligent Systems Group (BISG), Faculty of Information Technology and Electrical Engineering, University of Oulu, Oulu, Finland. Electronic address: tirthankar.paul@oulu.fi.
  • Vainio S; InfoTech Oulu, Faculty of Biochemistry and Molecular Medicine, Biocenter Oulu, Laboratory of Development Biology, University of Oulu, Oulu, Finland. Electronic address: seppo.vainio@oulu.fi.
  • Roning J; InfoTech Oulu, Biomimetics and Intelligent Systems Group (BISG), Faculty of Information Technology and Electrical Engineering, University of Oulu, Oulu, Finland. Electronic address: juha.roning@oulu.fi.
Genomics ; 113(1 Pt 2): 778-784, 2021 01.
Article in English | MEDLINE | ID: covidwho-867194
ABSTRACT
The coronavirus pandemic became a major risk in global public health. The outbreak is caused by SARS-CoV-2, a member of the coronavirus family. Though the images of the virus are familiar to us, in the present study, an attempt is made to hear the coronavirus by translating its protein spike into audio sequences. The musical features such as pitch, timbre, volume and duration are mapped based on the coronavirus protein sequence. Three different viruses Influenza, Ebola and Coronavirus were studied and compared through their auditory virus sequences by implementing Haar wavelet transform. The sonification of the coronavirus benefits in understanding the protein structures by enhancing the hidden features. Further, it makes a clear difference in the representation of coronavirus compared with other viruses, which will help in various research works related to virus sequence. This evolves as a simplified and novel way of representing the conventional computational methods.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: Algorithms / Genome, Viral / Wavelet Analysis / SARS-CoV-2 / COVID-19 / Music Type of study: Prognostic study Limits: Humans Language: English Journal: Genomics Journal subject: Genetics Year: 2021 Document Type: Article

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Full text: Available Collection: International databases Database: MEDLINE Main subject: Algorithms / Genome, Viral / Wavelet Analysis / SARS-CoV-2 / COVID-19 / Music Type of study: Prognostic study Limits: Humans Language: English Journal: Genomics Journal subject: Genetics Year: 2021 Document Type: Article