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Hospitalised COVID-19 patients of the Mount Sinai Health System: a retrospective observational study using the electronic medical records.
Wang, Zichen; Zheutlin, Amanda; Kao, Yu-Han; Ayers, Kristin; Gross, Susan; Kovatch, Patricia; Nirenberg, Sharon; Charney, Alexander; Nadkarni, Girish; De Freitas, Jessica K; O'Reilly, Paul; Just, Allan; Horowitz, Carol; Martin, Glenn; Branch, Andrea; Glicksberg, Benjamin S; Charney, Dennis; Reich, David; Oh, William K; Schadt, Eric; Chen, Rong; Li, Li.
  • Wang Z; Sema4, Stamford, Connecticut, USA.
  • Zheutlin A; Sema4, Stamford, Connecticut, USA.
  • Kao YH; Sema4, Stamford, Connecticut, USA.
  • Ayers K; Sema4, Stamford, Connecticut, USA.
  • Gross S; Sema4, Stamford, Connecticut, USA.
  • Kovatch P; Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Nirenberg S; Mount Sinai Data Warehouse, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Charney A; Mount Sinai Data Warehouse, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Nadkarni G; Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • De Freitas JK; The Pamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • O'Reilly P; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Just A; The Hasso Plattner Institute for Digital Health at the Mount Sinai, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Horowitz C; Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Martin G; The Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Branch A; Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Glicksberg BS; The Hasso Plattner Institute for Digital Health at the Mount Sinai, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Charney D; Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Reich D; The Pamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Oh WK; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Schadt E; Institute for Exposomic Research, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Chen R; Department of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  • Li L; Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
BMJ Open ; 10(10): e040441, 2020 10 26.
Article in English | MEDLINE | ID: covidwho-894876
ABSTRACT

OBJECTIVE:

To assess association of clinical features on COVID-19 patient outcomes.

DESIGN:

Retrospective observational study using electronic medical record data.

SETTING:

Five member hospitals from the Mount Sinai Health System in New York City (NYC).

PARTICIPANTS:

28 336 patients tested for SARS-CoV-2 from 24 February 2020 to 15 April 2020, including 6158 laboratory-confirmed COVID-19 cases. MAIN OUTCOMES AND

MEASURES:

Positive test rates and in-hospital mortality were assessed for different racial groups. Among positive cases admitted to the hospital (N=3273), we estimated HR for both discharge and death across various explanatory variables, including patient demographics, hospital site and unit, smoking status, vital signs, lab results and comorbidities.

RESULTS:

Hispanics (29%) and African Americans (25%) had disproportionately high positive case rates relative to their representation in the overall NYC population (p<0.05); however, no differences in mortality rates were observed in hospitalised patients based on race. Outcomes differed significantly between hospitals (Gray's T=248.9; p<0.05), reflecting differences in average baseline age and underlying comorbidities. Significant risk factors for mortality included age (HR 1.05, 95% CI 1.04 to 1.06; p=1.15e-32), oxygen saturation (HR 0.985, 95% CI 0.982 to 0.988; p=1.57e-17), care in intensive care unit areas (HR 1.58, 95% CI 1.29 to 1.92; p=7.81e-6) and elevated creatinine (HR 1.75, 95% CI 1.47 to 2.10; p=7.48e-10), white cell count (HR 1.02, 95% CI 1.01 to 1.04; p=8.4e-3) and body mass index (BMI) (HR 1.02, 95% CI 1.00 to 1.03; p=1.09e-2). Deceased patients were more likely to have elevated markers of inflammation.

CONCLUSIONS:

While race was associated with higher risk of infection, we did not find racial disparities in inpatient mortality suggesting that outcomes in a single tertiary care health system are comparable across races. In addition, we identified key clinical features associated with reduced mortality and discharge. These findings could help to identify which COVID-19 patients are at greatest risk of a severe infection response and predict survival.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: Pneumonia, Viral / Coronavirus Infections / Pandemics / Betacoronavirus / Hospitalization / Intensive Care Units Type of study: Diagnostic study / Experimental Studies / Observational study / Prognostic study / Randomized controlled trials Limits: Female / Humans / Male / Middle aged Country/Region as subject: North America Language: English Journal: BMJ Open Year: 2020 Document Type: Article Affiliation country: Bmjopen-2020-040441

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Full text: Available Collection: International databases Database: MEDLINE Main subject: Pneumonia, Viral / Coronavirus Infections / Pandemics / Betacoronavirus / Hospitalization / Intensive Care Units Type of study: Diagnostic study / Experimental Studies / Observational study / Prognostic study / Randomized controlled trials Limits: Female / Humans / Male / Middle aged Country/Region as subject: North America Language: English Journal: BMJ Open Year: 2020 Document Type: Article Affiliation country: Bmjopen-2020-040441