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Culinary spice bioactives as potential therapeutics against SARS-CoV-2: Computational investigation.
Natesh, Jagadish; Mondal, Priya; Penta, Dhanamjai; Abdul Salam, Abdul Ajees; Meeran, Syed Musthapa.
  • Natesh J; Department of Biochemistry, CSIR-Central Food Technological Research Institute, Mysore, 570 020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201 002, India.
  • Mondal P; Department of Biochemistry, CSIR-Central Food Technological Research Institute, Mysore, 570 020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201 002, India.
  • Penta D; Department of Biochemistry, CSIR-Central Food Technological Research Institute, Mysore, 570 020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201 002, India.
  • Abdul Salam AA; Department of Atomic and Molecular Physics, Centre for Applied Nanosciences, Manipal Academy of Higher Education, Manipal, 576 104, India.
  • Meeran SM; Department of Biochemistry, CSIR-Central Food Technological Research Institute, Mysore, 570 020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201 002, India. Electronic address: s.musthapa@cftri.res.in.
Comput Biol Med ; 128: 104102, 2021 01.
Article in English | MEDLINE | ID: covidwho-898663
ABSTRACT

BACKGROUND:

Coronavirus disease-2019 (COVID-19) is an infectious pandemic caused by SARS-CoV-2. SARS-CoV-2 main protease (Mpro) and spike protein are crucial for viral replication and transmission. Spike protein recognizes the human ACE2 receptor and transmits SARS-CoV-2 into the human body. Thus, Mpro, spike protein, and ACE2 receptor act as appropriate targets for the development of therapeutics against SARS-CoV-2. Spices are traditionally known to have anti-viral and immune-boosting activities. Therefore, we investigated the possible use of selected spice bioactives against the potential targets of SARS-CoV-2 using computational analysis.

METHODS:

Molecular docking analysis was performed to analyze the binding efficiency of spice bioactives against SARS-CoV-2 target proteins along with the standard drugs. Drug-likeness properties of selected spice bioactives were investigated using Lipinski's rule of five and the SWISSADME database. Pharmacological properties such as ADME/T, biological functions, and toxicity were analyzed using ADMETlab, PASS-prediction, and ProTox-II servers, respectively.

RESULTS:

Out of forty-six spice bioactives screened, six bioactives have shown relatively better binding energies than the standard drugs and have a higher binding affinity with at least more than two targets of SARS-CoV-2. The selected bioactives were analyzed for their binding similarities with the standard drug, remdesivir, towards the targets of SARS-CoV-2. Selected spice bioactives have shown potential drug-likeness properties, with higher GI absorption rate, lower toxicity with pleiotropic biological roles.

CONCLUSIONS:

Spice bioactives have the potential to bind with the specific targets involved in SARS-CoV-2 infection and transmission. Therefore, spice-based nutraceuticals can be developed for the prevention and treatment of COVID-19.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: Antiviral Agents / Viral Proteins / Spices / Molecular Dynamics Simulation / Molecular Docking Simulation / SARS-CoV-2 Type of study: Prognostic study Limits: Humans Language: English Journal: Comput Biol Med Year: 2021 Document Type: Article Affiliation country: J.compbiomed.2020.104102

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Full text: Available Collection: International databases Database: MEDLINE Main subject: Antiviral Agents / Viral Proteins / Spices / Molecular Dynamics Simulation / Molecular Docking Simulation / SARS-CoV-2 Type of study: Prognostic study Limits: Humans Language: English Journal: Comput Biol Med Year: 2021 Document Type: Article Affiliation country: J.compbiomed.2020.104102