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1.
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision.
Nat Methods
; 20(8): 1159-1169, 2023 08.
Artículo
en Inglés
| MEDLINE | ID: mdl-37443337
2.
FL-circAS: an integrative resource and analysis for full-length sequences and alternative splicing of circular RNAs with nanopore sequencing.
Nucleic Acids Res
; 52(D1): D115-D123, 2024 Jan 05.
Artículo
en Inglés
| MEDLINE | ID: mdl-37823705
3.
Detecting intragenic trans-splicing events from non-co-linearly spliced junctions by hybrid sequencing.
Nucleic Acids Res
; 51(15): 7777-7797, 2023 08 25.
Artículo
en Inglés
| MEDLINE | ID: mdl-37497782
4.
Genome-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism.
Genome Res
; 30(3): 375-391, 2020 03.
Artículo
en Inglés
| MEDLINE | ID: mdl-32127416
5.
Trans-genetic effects of circular RNA expression quantitative trait loci and potential causal mechanisms in autism.
Mol Psychiatry
; 27(11): 4695-4706, 2022 Nov.
Artículo
en Inglés
| MEDLINE | ID: mdl-35962193
6.
CircMiMi: a stand-alone software for constructing circular RNA-microRNA-mRNA interactions across species.
BMC Bioinformatics
; 23(1): 164, 2022 May 06.
Artículo
en Inglés
| MEDLINE | ID: mdl-35524165
7.
A-to-I RNA editing contributes to the persistence of predicted damaging mutations in populations.
Genome Res
; 29(11): 1766-1776, 2019 11.
Artículo
en Inglés
| MEDLINE | ID: mdl-31515285
8.
Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cells.
Nucleic Acids Res
; 46(7): 3671-3691, 2018 04 20.
Artículo
en Inglés
| MEDLINE | ID: mdl-29385530
9.
NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectors.
BMC Bioinformatics
; 20(1): 3, 2019 Jan 03.
Artículo
en Inglés
| MEDLINE | ID: mdl-30606103
10.
NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision.
Nucleic Acids Res
; 44(3): e29, 2016 Feb 18.
Artículo
en Inglés
| MEDLINE | ID: mdl-26442529
11.
Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency.
Genome Res
; 24(1): 25-36, 2014 Jan.
Artículo
en Inglés
| MEDLINE | ID: mdl-24131564
12.
Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?
Nucleic Acids Res
; 42(14): 9410-23, 2014 Aug.
Artículo
en Inglés
| MEDLINE | ID: mdl-25053845
13.
DNA methylation is associated with an increased level of conservation at nondegenerate nucleotides in mammals.
Mol Biol Evol
; 31(2): 387-96, 2014 Feb.
Artículo
en Inglés
| MEDLINE | ID: mdl-24157417
14.
Comparative genomics of grass EST libraries reveals previously uncharacterized splicing events in crop plants.
BMC Plant Biol
; 15: 39, 2015 Feb 05.
Artículo
en Inglés
| MEDLINE | ID: mdl-25652661
15.
Comment on "A comprehensive overview and evaluation of circular RNA detection tools".
PLoS Comput Biol
; 15(5): e1006158, 2019 05.
Artículo
en Inglés
| MEDLINE | ID: mdl-31150384
16.
The impact of trans-regulation on the evolutionary rates of metazoan proteins.
Nucleic Acids Res
; 41(13): 6371-80, 2013 Jul.
Artículo
en Inglés
| MEDLINE | ID: mdl-23658220
17.
Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons.
Proc Natl Acad Sci U S A
; 109(39): 15841-6, 2012 Sep 25.
Artículo
en Inglés
| MEDLINE | ID: mdl-23019368
18.
The evolution of the coding exome of the Arabidopsis species--the influences of DNA methylation, relative exon position, and exon length.
BMC Evol Biol
; 14: 145, 2014 Jun 25.
Artículo
en Inglés
| MEDLINE | ID: mdl-24965500
19.
A longer time to relapse is associated with a larger increase in differences between paired primary and recurrent IDH wild-type glioblastomas at both the transcriptomic and genomic levels.
Acta Neuropathol Commun
; 12(1): 77, 2024 May 18.
Artículo
en Inglés
| MEDLINE | ID: mdl-38762464
20.
Long-term hematopoietic transfer of the anti-cancer and lifespan-extending capabilities of a genetically engineered blood system by transplantation of bone marrow mononuclear cells.
Elife
; 122024 May 16.
Artículo
en Inglés
| MEDLINE | ID: mdl-38752723