Búsqueda | Biblioteca Virtual en Salud

1.

Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer.

Murchison, Elizabeth P; Schulz-Trieglaff, Ole B; Ning, Zemin; Alexandrov, Ludmil B; Bauer, Markus J; Fu, Beiyuan; Hims, Matthew; Ding, Zhihao; Ivakhno, Sergii; Stewart, Caitlin; Ng, Bee Ling; Wong, Wendy; Aken, Bronwen; White, Simon; Alsop, Amber; Becq, Jennifer; Bignell, Graham R; Cheetham, R Keira; Cheng, William; Connor, Thomas R; Cox, Anthony J; Feng, Zhi-Ping; Gu, Yong; Grocock, Russell J; Harris, Simon R; Khrebtukova, Irina; Kingsbury, Zoya; Kowarsky, Mark; Kreiss, Alexandre; Luo, Shujun; Marshall, John; McBride, David J; Murray, Lisa; Pearse, Anne-Maree; Raine, Keiran; Rasolonjatovo, Isabelle; Shaw, Richard; Tedder, Philip; Tregidgo, Carolyn; Vilella, Albert J; Wedge, David C; Woods, Gregory M; Gormley, Niall; Humphray, Sean; Schroth, Gary; Smith, Geoffrey; Hall, Kevin; Searle, Stephen M J; Carter, Nigel P; Papenfuss, Anthony T.

Cell ; 148(4): 780-91, 2012 Feb 17.

Artículo en Inglés | MEDLINE | ID: mdl-22341448

2.

Bead-linked transposomes enable a normalization-free workflow for NGS library preparation.

Bruinsma, Stephen; Burgess, Joshua; Schlingman, Daniel; Czyz, Agata; Morrell, Natalie; Ballenger, Catherine; Meinholz, Heather; Brady, Lee; Khanna, Anupama; Freeberg, Lindsay; Jackson, Rosamond G; Mathonet, Pascale; Verity, Susan C; Slatter, Andrew F; Golshani, Rooz; Grunenwald, Haiying; Schroth, Gary P; Gormley, Niall A.

BMC Genomics ; 19(1): 722, 2018 Oct 01.

Artículo en Inglés | MEDLINE | ID: mdl-30285621

3.

Improved genome sequencing using an engineered transposase.

Kia, Amirali; Gloeckner, Christian; Osothprarop, Trina; Gormley, Niall; Bomati, Erin; Stephenson, Michelle; Goryshin, Igor; He, Molly Min.

BMC Biotechnol ; 17(1): 6, 2017 01 17.

Artículo en Inglés | MEDLINE | ID: mdl-28095828

4.

NxTrim: optimized trimming of Illumina mate pair reads.

O'Connell, Jared; Schulz-Trieglaff, Ole; Carlson, Emma; Hims, Matthew M; Gormley, Niall A; Cox, Anthony J.

Bioinformatics ; 31(12): 2035-7, 2015 Jun 15.

Artículo en Inglés | MEDLINE | ID: mdl-25661542

5.

Clonality of HTLV-2 in natural infection.

Melamed, Anat; Witkover, Aviva D; Laydon, Daniel J; Brown, Rachael; Ladell, Kristin; Miners, Kelly; Rowan, Aileen G; Gormley, Niall; Price, David A; Taylor, Graham P; Murphy, Edward L; Bangham, Charles R M.

PLoS Pathog ; 10(3): e1004006, 2014 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-24626195

6.

A comprehensive catalogue of somatic mutations from a human cancer genome.

Pleasance, Erin D; Cheetham, R Keira; Stephens, Philip J; McBride, David J; Humphray, Sean J; Greenman, Chris D; Varela, Ignacio; Lin, Meng-Lay; Ordóñez, Gonzalo R; Bignell, Graham R; Ye, Kai; Alipaz, Julie; Bauer, Markus J; Beare, David; Butler, Adam; Carter, Richard J; Chen, Lina; Cox, Anthony J; Edkins, Sarah; Kokko-Gonzales, Paula I; Gormley, Niall A; Grocock, Russell J; Haudenschild, Christian D; Hims, Matthew M; James, Terena; Jia, Mingming; Kingsbury, Zoya; Leroy, Catherine; Marshall, John; Menzies, Andrew; Mudie, Laura J; Ning, Zemin; Royce, Tom; Schulz-Trieglaff, Ole B; Spiridou, Anastassia; Stebbings, Lucy A; Szajkowski, Lukasz; Teague, Jon; Williamson, David; Chin, Lynda; Ross, Mark T; Campbell, Peter J; Bentley, David R; Futreal, P Andrew; Stratton, Michael R.

Nature ; 463(7278): 191-6, 2010 Jan 14.

Artículo en Inglés | MEDLINE | ID: mdl-20016485

7.

Rapid single-colony whole-genome sequencing of bacterial pathogens.

Köser, Claudio U; Fraser, Louise J; Ioannou, Avgousta; Becq, Jennifer; Ellington, Matthew J; Holden, Matthew T G; Reuter, Sandra; Török, M Estée; Bentley, Stephen D; Parkhill, Julian; Gormley, Niall A; Smith, Geoffrey P; Peacock, Sharon J.

J Antimicrob Chemother ; 69(5): 1275-81, 2014 May.

Artículo en Inglés | MEDLINE | ID: mdl-24370932

8.

Accurate whole human genome sequencing using reversible terminator chemistry.

Bentley, David R; Balasubramanian, Shankar; Swerdlow, Harold P; Smith, Geoffrey P; Milton, John; Brown, Clive G; Hall, Kevin P; Evers, Dirk J; Barnes, Colin L; Bignell, Helen R; Boutell, Jonathan M; Bryant, Jason; Carter, Richard J; Keira Cheetham, R; Cox, Anthony J; Ellis, Darren J; Flatbush, Michael R; Gormley, Niall A; Humphray, Sean J; Irving, Leslie J; Karbelashvili, Mirian S; Kirk, Scott M; Li, Heng; Liu, Xiaohai; Maisinger, Klaus S; Murray, Lisa J; Obradovic, Bojan; Ost, Tobias; Parkinson, Michael L; Pratt, Mark R; Rasolonjatovo, Isabelle M J; Reed, Mark T; Rigatti, Roberto; Rodighiero, Chiara; Ross, Mark T; Sabot, Andrea; Sankar, Subramanian V; Scally, Aylwyn; Schroth, Gary P; Smith, Mark E; Smith, Vincent P; Spiridou, Anastassia; Torrance, Peta E; Tzonev, Svilen S; Vermaas, Eric H; Walter, Klaudia; Wu, Xiaolin; Zhang, Lu; Alam, Mohammed D; Anastasi, Carole.

Nature ; 456(7218): 53-9, 2008 Nov 06.

Artículo en Inglés | MEDLINE | ID: mdl-18987734

9.

Estimating abundances of retroviral insertion sites from DNA fragment length data.

Berry, Charles C; Gillet, Nicolas A; Melamed, Anat; Gormley, Niall; Bangham, Charles R M; Bushman, Frederic D.

Bioinformatics ; 28(6): 755-62, 2012 Mar 15.

Artículo en Inglés | MEDLINE | ID: mdl-22238265

10.

The host genomic environment of the provirus determines the abundance of HTLV-1-infected T-cell clones.

Gillet, Nicolas A; Malani, Nirav; Melamed, Anat; Gormley, Niall; Carter, Richard; Bentley, David; Berry, Charles; Bushman, Frederic D; Taylor, Graham P; Bangham, Charles R M.

Blood ; 117(11): 3113-22, 2011 Mar 17.

Artículo en Inglés | MEDLINE | ID: mdl-21228324

11.

Mild cognitive impairment.

Chukwujama, Ogo; Gormley, Niall.

N Engl J Med ; 365(14): 1358; author reply 1358-9, 2011 10 06.

Artículo en Inglés | MEDLINE | ID: mdl-21991975

12.

Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.

Zhang, Fan; Christiansen, Lena; Thomas, Jerushah; Pokholok, Dmitry; Jackson, Ros; Morrell, Natalie; Zhao, Yannan; Wiley, Melissa; Welch, Emily; Jaeger, Erich; Granat, Ana; Norberg, Steven J; Halpern, Aaron; C Rogert, Maria; Ronaghi, Mostafa; Shendure, Jay; Gormley, Niall; Gunderson, Kevin L; Steemers, Frank J.

Nat Biotechnol ; 35(9): 852-857, 2017 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-28650462

13.

DNA supercoiling enables the type IIS restriction enzyme BspMI to recognise the relative orientation of two DNA sequences.

Kingston, Isabel J; Gormley, Niall A; Halford, Stephen E.

Nucleic Acids Res ; 31(18): 5221-8, 2003 Sep 15.

Artículo en Inglés | MEDLINE | ID: mdl-12954757

14.

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.

Caporaso, J Gregory; Lauber, Christian L; Walters, William A; Berg-Lyons, Donna; Huntley, James; Fierer, Noah; Owens, Sarah M; Betley, Jason; Fraser, Louise; Bauer, Markus; Gormley, Niall; Gilbert, Jack A; Smith, Geoff; Knight, Rob.

ISME J ; 6(8): 1621-4, 2012 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-22402401

15.

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets.

Chitsaz, Hamidreza; Yee-Greenbaum, Joyclyn L; Tesler, Glenn; Lombardo, Mary-Jane; Dupont, Christopher L; Badger, Jonathan H; Novotny, Mark; Rusch, Douglas B; Fraser, Louise J; Gormley, Niall A; Schulz-Trieglaff, Ole; Smith, Geoffrey P; Evers, Dirk J; Pevzner, Pavel A; Lasken, Roger S.

Nat Biotechnol ; 29(10): 915-21, 2011 Sep 18.

Artículo en Inglés | MEDLINE | ID: mdl-21926975

16.

Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints.

Niemann, Stefan; Köser, Claudio U; Gagneux, Sebastien; Plinke, Claudia; Homolka, Susanne; Bignell, Helen; Carter, Richard J; Cheetham, R Keira; Cox, Anthony; Gormley, Niall A; Kokko-Gonzales, Paula; Murray, Lisa J; Rigatti, Roberto; Smith, Vincent P; Arends, Felix P M; Cox, Helen S; Smith, Geoff; Archer, John A C.

PLoS One ; 4(10): e7407, 2009 Oct 12.

Artículo en Inglés | MEDLINE | ID: mdl-19823582

17.

The type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequence.

Gormley, Niall A; Hillberg, Anna L; Halford, Stephen E.

J Biol Chem ; 277(6): 4034-41, 2002 Feb 08.

Artículo en Inglés | MEDLINE | ID: mdl-11729188

18.

Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA.

Bath, Abigail J; Milsom, Susan E; Gormley, Niall A; Halford, Stephen E.

J Biol Chem ; 277(6): 4024-33, 2002 Feb 08.

Artículo en Inglés | MEDLINE | ID: mdl-11729187

19.

Predictors of institutionalization in patients with dementia in Korea.

Kim, Jae-Min; Shin, Il-Seon; Jeong, Seong-Joo; Gormley, Niall; Yoon, Jin-Sang.

Int J Geriatr Psychiatry ; 17(2): 101-6, 2002 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-11813270

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