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1.
Sixty-five years of the long march in protein secondary structure prediction: the final stretch?
Brief Bioinform
; 19(3): 482-494, 2018 05 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-28040746
2.
SPIN2: Predicting sequence profiles from protein structures using deep neural networks.
Proteins
; 86(6): 629-633, 2018 06.
Artículo
en Inglés
| MEDLINE | ID: mdl-29508448
3.
Single-sequence-based prediction of protein secondary structures and solvent accessibility by deep whole-sequence learning.
J Comput Chem
; 39(26): 2210-2216, 2018 10 05.
Artículo
en Inglés
| MEDLINE | ID: mdl-30368831
4.
Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles, contact numbers and solvent accessibility.
Bioinformatics
; 33(18): 2842-2849, 2017 Sep 15.
Artículo
en Inglés
| MEDLINE | ID: mdl-28430949
5.
Detecting Proline and Non-Proline Cis Isomers in Protein Structures from Sequences Using Deep Residual Ensemble Learning.
J Chem Inf Model
; 58(9): 2033-2042, 2018 09 24.
Artículo
en Inglés
| MEDLINE | ID: mdl-30118602
6.
Highly accurate sequence-based prediction of half-sphere exposures of amino acid residues in proteins.
Bioinformatics
; 32(6): 843-9, 2016 03 15.
Artículo
en Inglés
| MEDLINE | ID: mdl-26568622
7.
Protein fold recognition using HMM-HMM alignment and dynamic programming.
J Theor Biol
; 393: 67-74, 2016 Mar 21.
Artículo
en Inglés
| MEDLINE | ID: mdl-26801876
8.
Gram-positive and Gram-negative subcellular localization using rotation forest and physicochemical-based features.
BMC Bioinformatics
; 16 Suppl 4: S1, 2015.
Artículo
en Inglés
| MEDLINE | ID: mdl-25734546
9.
Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou׳s general PseAAC.
J Theor Biol
; 364: 284-94, 2015 Jan 07.
Artículo
en Inglés
| MEDLINE | ID: mdl-25264267
10.
Predicting backbone Cα angles and dihedrals from protein sequences by stacked sparse auto-encoder deep neural network.
J Comput Chem
; 35(28): 2040-6, 2014 Oct 30.
Artículo
en Inglés
| MEDLINE | ID: mdl-25212657
11.
SPIDER2: A Package to Predict Secondary Structure, Accessible Surface Area, and Main-Chain Torsional Angles by Deep Neural Networks.
Methods Mol Biol
; 1484: 55-63, 2017.
Artículo
en Inglés
| MEDLINE | ID: mdl-27787820
12.
Advancing the Accuracy of Protein Fold Recognition by Utilizing Profiles From Hidden Markov Models.
IEEE Trans Nanobioscience
; 14(7): 761-72, 2015 Oct.
Artículo
en Inglés
| MEDLINE | ID: mdl-26208362
13.
Improving prediction of secondary structure, local backbone angles, and solvent accessible surface area of proteins by iterative deep learning.
Sci Rep
; 5: 11476, 2015 Jun 22.
Artículo
en Inglés
| MEDLINE | ID: mdl-26098304
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