Detalles de la búsqueda
1.
Improved drug response prediction by drug target data integration via network-based profiling.
Brief Bioinform
; 24(2)2023 03 19.
Artículo
en Inglés
| MEDLINE | ID: mdl-36752352
2.
A model-agnostic framework to enhance knowledge graph-based drug combination prediction with drug-drug interaction data and supervised contrastive learning.
Brief Bioinform
; 24(5)2023 09 20.
Artículo
en Inglés
| MEDLINE | ID: mdl-37544660
3.
DNMT1 maintains metabolic fitness of adipocytes through acting as an epigenetic safeguard of mitochondrial dynamics.
Proc Natl Acad Sci U S A
; 118(11)2021 03 16.
Artículo
en Inglés
| MEDLINE | ID: mdl-33836591
4.
AutoCoV: tracking the early spread of COVID-19 in terms of the spatial and temporal patterns from embedding space by K-mer based deep learning.
BMC Bioinformatics
; 23(Suppl 3): 149, 2022 Apr 25.
Artículo
en Inglés
| MEDLINE | ID: mdl-35468739
5.
Comprehensive and critical evaluation of individualized pathway activity measurement tools on pan-cancer data.
Brief Bioinform
; 21(1): 36-46, 2020 Jan 17.
Artículo
en Inglés
| MEDLINE | ID: mdl-30462155
6.
Cancer subtype classification and modeling by pathway attention and propagation.
Bioinformatics
; 36(12): 3818-3824, 2020 06 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-32207514
7.
PRISM: methylation pattern-based, reference-free inference of subclonal makeup.
Bioinformatics
; 35(14): i520-i529, 2019 07 15.
Artículo
en Inglés
| MEDLINE | ID: mdl-31510697
8.
Venn-diaNet : venn diagram based network propagation analysis framework for comparing multiple biological experiments.
BMC Bioinformatics
; 20(Suppl 23): 667, 2019 Dec 27.
Artículo
en Inglés
| MEDLINE | ID: mdl-31881980
9.
StressGenePred: a twin prediction model architecture for classifying the stress types of samples and discovering stress-related genes in arabidopsis.
BMC Genomics
; 20(Suppl 11): 949, 2019 Dec 20.
Artículo
en Inglés
| MEDLINE | ID: mdl-31856731
10.
In silico experiment system for testing hypothesis on gene functions using three condition specific biological networks.
Methods
; 145: 10-15, 2018 08 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-29758273
11.
MIDAS: Mining differentially activated subpaths of KEGG pathways from multi-class RNA-seq data.
Methods
; 124: 13-24, 2017 07 15.
Artículo
en Inglés
| MEDLINE | ID: mdl-28579402
12.
BioVLAB-mCpG-SNP-EXPRESS: A system for multi-level and multi-perspective analysis and exploration of DNA methylation, sequence variation (SNPs), and gene expression from multi-omics data.
Methods
; 111: 64-71, 2016 12 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-27477210
13.
Dual Representation Learning for Predicting Drug-side Effect Frequency using Protein Target Information.
IEEE J Biomed Health Inform
; PP2024 Jan 05.
Artículo
en Inglés
| MEDLINE | ID: mdl-38241108
14.
Multi-layered knowledge graph neural network reveals pathway-level agreement of three breast cancer multi-gene assays.
Comput Struct Biotechnol J
; 23: 1715-1724, 2024 Dec.
Artículo
en Inglés
| MEDLINE | ID: mdl-38689720
15.
Biomedical knowledge graph learning for drug repurposing by extending guilt-by-association to multiple layers.
Nat Commun
; 14(1): 3570, 2023 06 15.
Artículo
en Inglés
| MEDLINE | ID: mdl-37322032
16.
Exploring chemical space for lead identification by propagating on chemical similarity network.
Comput Struct Biotechnol J
; 21: 4187-4195, 2023.
Artículo
en Inglés
| MEDLINE | ID: mdl-37680266
17.
MLDEG: A Machine Learning Approach to Identify Differentially Expressed Genes Using Network Property and Network Propagation.
IEEE/ACM Trans Comput Biol Bioinform
; 19(4): 2356-2364, 2022.
Artículo
en Inglés
| MEDLINE | ID: mdl-33750713
18.
On modeling and utilizing chemical compound information with deep learning technologies: A task-oriented approach.
Comput Struct Biotechnol J
; 20: 4288-4304, 2022.
Artículo
en Inglés
| MEDLINE | ID: mdl-36051875
19.
Risk Stratification for Breast Cancer Patient by Simultaneous Learning of Molecular Subtype and Survival Outcome Using Genetic Algorithm-Based Gene Set Selection.
Cancers (Basel)
; 14(17)2022 Aug 25.
Artículo
en Inglés
| MEDLINE | ID: mdl-36077657
20.
Deep hierarchical embedding for simultaneous modeling of GPCR proteins in a unified metric space.
Sci Rep
; 11(1): 9543, 2021 05 05.
Artículo
en Inglés
| MEDLINE | ID: mdl-33953216