Detalles de la búsqueda
1.
UNRES-Dock-protein-protein and peptide-protein docking by coarse-grained replica-exchange MD simulations.
Bioinformatics
; 37(11): 1613-1615, 2021 07 12.
Artículo
en Inglés
| MEDLINE | ID: mdl-33079977
2.
Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13.
J Chem Inf Model
; 60(3): 1844-1864, 2020 03 23.
Artículo
en Inglés
| MEDLINE | ID: mdl-31999919
3.
Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
Proteins
; 87(12): 1200-1221, 2019 12.
Artículo
en Inglés
| MEDLINE | ID: mdl-31612567
4.
Prediction of protein structure with the coarse-grained UNRES force field assisted by small X-ray scattering data and knowledge-based information.
Proteins
; 86 Suppl 1: 228-239, 2018 03.
Artículo
en Inglés
| MEDLINE | ID: mdl-29134679
5.
Preventing fibril formation of a protein by selective mutation.
Proc Natl Acad Sci U S A
; 112(44): 13549-54, 2015 Nov 03.
Artículo
en Inglés
| MEDLINE | ID: mdl-26483482
6.
Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins.
J Comput Chem
; 38(31): 2730-2746, 2017 12 05.
Artículo
en Inglés
| MEDLINE | ID: mdl-28940211
7.
Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.
Bioinformatics
; 32(21): 3270-3278, 2016 11 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-27378298
8.
Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field.
J Chem Inf Model
; 56(11): 2263-2279, 2016 11 28.
Artículo
en Inglés
| MEDLINE | ID: mdl-27749055
9.
Lessons from application of the UNRES force field to predictions of structures of CASP10 targets.
Proc Natl Acad Sci U S A
; 110(37): 14936-41, 2013 Sep 10.
Artículo
en Inglés
| MEDLINE | ID: mdl-23980156
10.
Molecular modeling of the binding modes of the iron-sulfur protein to the Jac1 co-chaperone from Saccharomyces cerevisiae by all-atom and coarse-grained approaches.
Proteins
; 83(8): 1414-26, 2015 Aug.
Artículo
en Inglés
| MEDLINE | ID: mdl-25973573
11.
Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field.
J Chem Inf Model
; 55(6): 1271-81, 2015 Jun 22.
Artículo
en Inglés
| MEDLINE | ID: mdl-25965196
12.
WeFold: a coopetition for protein structure prediction.
Proteins
; 82(9): 1850-68, 2014 Sep.
Artículo
en Inglés
| MEDLINE | ID: mdl-24677212
13.
Modeling the Structure, Dynamics, and Transformations of Proteins with the UNRES Force Field.
Methods Mol Biol
; 2376: 399-416, 2022.
Artículo
en Inglés
| MEDLINE | ID: mdl-34845623
14.
Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers.
Prog Mol Biol Transl Sci
; 170: 73-122, 2020.
Artículo
en Inglés
| MEDLINE | ID: mdl-32145953
15.
Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment.
J Mol Graph Model
; 92: 154-166, 2019 11.
Artículo
en Inglés
| MEDLINE | ID: mdl-31376733
16.
Extension of coarse-grained UNRES force field to treat carbon nanotubes.
J Mol Model
; 24(5): 121, 2018 Apr 26.
Artículo
en Inglés
| MEDLINE | ID: mdl-29700628
17.
Reoptimized UNRES Potential for Protein Model Quality Assessment.
Genes (Basel)
; 9(12)2018 Dec 03.
Artículo
en Inglés
| MEDLINE | ID: mdl-30513992
18.
Unveiling new interdependencies between significant DNA methylation sites, gene expression profiles and glioma patients survival.
Sci Rep
; 8(1): 4390, 2018 03 13.
Artículo
en Inglés
| MEDLINE | ID: mdl-29535343
19.
Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets.
J Mol Graph Model
; 83: 92-99, 2018 08.
Artículo
en Inglés
| MEDLINE | ID: mdl-29860162
20.
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.
Sci Rep
; 8(1): 9939, 2018 07 02.
Artículo
en Inglés
| MEDLINE | ID: mdl-29967418