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1.
Exon Elongation Added Intrinsically Disordered Regions to the Encoded Proteins and Facilitated the Emergence of the Last Eukaryotic Common Ancestor.
Mol Biol Evol
; 40(1)2023 01 04.
Artículo
en Inglés
| MEDLINE | ID: mdl-36529689
2.
Codon usage is less optimized in eukaryotic gene segments encoding intrinsically disordered regions than in those encoding structural domains.
Nucleic Acids Res
; 44(21): 10051-10061, 2016 12 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-27915289
3.
Both Intrinsically Disordered Regions and Structural Domains Evolve Rapidly in Immune-Related Mammalian Proteins.
Int J Mol Sci
; 19(12)2018 Dec 04.
Artículo
en Inglés
| MEDLINE | ID: mdl-30518031
4.
A Method for Systematic Assessment of Intrinsically Disordered Protein Regions by NMR.
Int J Mol Sci
; 16(7): 15743-60, 2015 Jul 10.
Artículo
en Inglés
| MEDLINE | ID: mdl-26184172
5.
ESPRESSO: a system for estimating protein expression and solubility in protein expression systems.
Proteomics
; 13(9): 1444-56, 2013 May.
Artículo
en Inglés
| MEDLINE | ID: mdl-23436767
6.
MFSPSSMpred: identifying short disorder-to-order binding regions in disordered proteins based on contextual local evolutionary conservation.
BMC Bioinformatics
; 14: 300, 2013 Oct 04.
Artículo
en Inglés
| MEDLINE | ID: mdl-24093637
7.
SAHG, a comprehensive database of predicted structures of all human proteins.
Nucleic Acids Res
; 39(Database issue): D487-93, 2011 Jan.
Artículo
en Inglés
| MEDLINE | ID: mdl-21051360
8.
Prediction of protein motions from amino acid sequence and its application to protein-protein interaction.
BMC Struct Biol
; 10: 20, 2010 Jul 13.
Artículo
en Inglés
| MEDLINE | ID: mdl-20626880
9.
POODLE-I: disordered region prediction by integrating POODLE series and structural information predictors based on a workflow approach.
In Silico Biol
; 10(3): 185-91, 2010.
Artículo
en Inglés
| MEDLINE | ID: mdl-22430291
10.
POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix.
Bioinformatics
; 23(17): 2337-8, 2007 Sep 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-17599940
11.
POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions.
Bioinformatics
; 23(16): 2046-53, 2007 Aug 15.
Artículo
en Inglés
| MEDLINE | ID: mdl-17545177
12.
Predicting mostly disordered proteins by using structure-unknown protein data.
BMC Bioinformatics
; 8: 78, 2007 Mar 06.
Artículo
en Inglés
| MEDLINE | ID: mdl-17338828
13.
Systematic comparison of catalytic mechanisms of hydrolysis and transfer reactions classified in the EzCatDB database.
Proteins
; 66(1): 147-59, 2007 Jan 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-17039546
14.
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003.
Nucleic Acids Res
; 31(1): 492-3, 2003 Jan 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-12520060
15.
Condensing position-specific scoring matrixs by the Kidera factors for ligand-binding site prediction.
Int J Data Min Bioinform
; 12(1): 70-84, 2015.
Artículo
en Inglés
| MEDLINE | ID: mdl-26489143
16.
Analysis of evolutionary conservation patterns and their influence on identifying protein functional sites.
J Bioinform Comput Biol
; 12(5): 1440003, 2014 Oct.
Artículo
en Inglés
| MEDLINE | ID: mdl-25362840
17.
Simplified sequence-based method for ATP-binding prediction using contextual local evolutionary conservation.
Algorithms Mol Biol
; 9(1): 7, 2014 Mar 11.
Artículo
en Inglés
| MEDLINE | ID: mdl-24618258
18.
Development and evaluation of data-driven designed tags (DDTs) for controlling protein solubility.
N Biotechnol
; 28(3): 225-31, 2011 Apr 30.
Artículo
en Inglés
| MEDLINE | ID: mdl-20837175
19.
Statistical analysis of features associated with protein expression/solubility in an in vivo Escherichia coli expression system and a wheat germ cell-free expression system.
J Biochem
; 150(1): 73-81, 2011 Jul.
Artículo
en Inglés
| MEDLINE | ID: mdl-21478485
20.
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.
J Biomed Semantics
; 1(1): 8, 2010 Aug 21.
Artículo
en Inglés
| MEDLINE | ID: mdl-20727200
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