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1.

Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China.

Lu, Jing; du Plessis, Louis; Liu, Zhe; Hill, Verity; Kang, Min; Lin, Huifang; Sun, Jiufeng; François, Sarah; Kraemer, Moritz U G; Faria, Nuno R; McCrone, John T; Peng, Jinju; Xiong, Qianling; Yuan, Runyu; Zeng, Lilian; Zhou, Pingping; Liang, Chumin; Yi, Lina; Liu, Jun; Xiao, Jianpeng; Hu, Jianxiong; Liu, Tao; Ma, Wenjun; Li, Wei; Su, Juan; Zheng, Huanying; Peng, Bo; Fang, Shisong; Su, Wenzhe; Li, Kuibiao; Sun, Ruilin; Bai, Ru; Tang, Xi; Liang, Minfeng; Quick, Josh; Song, Tie; Rambaut, Andrew; Loman, Nick; Raghwani, Jayna; Pybus, Oliver G; Ke, Changwen.

Cell ; 181(5): 997-1003.e9, 2020 05 28.

Artículo en Inglés | MEDLINE | ID: mdl-32359424

2.

Telomere-to-telomere assembly of a complete human X chromosome.

Miga, Karen H; Koren, Sergey; Rhie, Arang; Vollger, Mitchell R; Gershman, Ariel; Bzikadze, Andrey; Brooks, Shelise; Howe, Edmund; Porubsky, David; Logsdon, Glennis A; Schneider, Valerie A; Potapova, Tamara; Wood, Jonathan; Chow, William; Armstrong, Joel; Fredrickson, Jeanne; Pak, Evgenia; Tigyi, Kristof; Kremitzki, Milinn; Markovic, Christopher; Maduro, Valerie; Dutra, Amalia; Bouffard, Gerard G; Chang, Alexander M; Hansen, Nancy F; Wilfert, Amy B; Thibaud-Nissen, Françoise; Schmitt, Anthony D; Belton, Jon-Matthew; Selvaraj, Siddarth; Dennis, Megan Y; Soto, Daniela C; Sahasrabudhe, Ruta; Kaya, Gulhan; Quick, Josh; Loman, Nicholas J; Holmes, Nadine; Loose, Matthew; Surti, Urvashi; Risques, Rosa Ana; Graves Lindsay, Tina A; Fulton, Robert; Hall, Ira; Paten, Benedict; Howe, Kerstin; Timp, Winston; Young, Alice; Mullikin, James C; Pevzner, Pavel A; Gerton, Jennifer L.

Nature ; 585(7823): 79-84, 2020 09.

Artículo en Inglés | MEDLINE | ID: mdl-32663838

3.

Recurrent SARS-CoV-2 mutations in immunodeficient patients.

Wilkinson, S A J; Richter, Alex; Casey, Anna; Osman, Husam; Mirza, Jeremy D; Stockton, Joanne; Quick, Josh; Ratcliffe, Liz; Sparks, Natalie; Cumley, Nicola; Poplawski, Radoslaw; Nicholls, Samuel N; Kele, Beatrix; Harris, Kathryn; Peacock, Thomas P; Loman, Nicholas J.

Virus Evol ; 8(2): veac050, 2022 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-35996593

4.

Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity.

Butera, Yvan; Mukantwari, Enatha; Artesi, Maria; Umuringa, Jeanne d'arc; O'Toole, Áine Niamh; Hill, Verity; Rooke, Stefan; Hong, Samuel Leandro; Dellicour, Simon; Majyambere, Onesphore; Bontems, Sebastien; Boujemla, Bouchra; Quick, Josh; Resende, Paola Cristina; Loman, Nick; Umumararungu, Esperance; Kabanda, Alice; Murindahabi, Marylin Milumbu; Tuyisenge, Patrick; Gashegu, Misbah; Rwabihama, Jean Paul; Sindayiheba, Reuben; Gikic, Djordje; Souopgui, Jacob; Ndifon, Wilfred; Rutayisire, Robert; Gatare, Swaibu; Mpunga, Tharcisse; Ngamije, Daniel; Bours, Vincent; Rambaut, Andrew; Nsanzimana, Sabin; Baele, Guy; Durkin, Keith; Mutesa, Leon; Rujeni, Nadine.

Nat Commun ; 12(1): 5705, 2021 09 29.

Artículo en Inglés | MEDLINE | ID: mdl-34588460

5.

Treatment of COVID-19 with remdesivir in the absence of humoral immunity: a case report.

Buckland, Matthew S; Galloway, James B; Fhogartaigh, Caoimhe Nic; Meredith, Luke; Provine, Nicholas M; Bloor, Stuart; Ogbe, Ane; Zelek, Wioleta M; Smielewska, Anna; Yakovleva, Anna; Mann, Tiffeney; Bergamaschi, Laura; Turner, Lorinda; Mescia, Frederica; Toonen, Erik J M; Hackstein, Carl-Philipp; Akther, Hossain Delowar; Vieira, Vinicius Adriano; Ceron-Gutierrez, Lourdes; Periselneris, Jimstan; Kiani-Alikhan, Sorena; Grigoriadou, Sofia; Vaghela, Devan; Lear, Sara E; Török, M Estée; Hamilton, William L; Stockton, Joanne; Quick, Josh; Nelson, Peter; Hunter, Michael; Coulter, Tanya I; Devlin, Lisa; Bradley, John R; Smith, Kenneth G C; Ouwehand, Willem H; Estcourt, Lise; Harvala, Heli; Roberts, David J; Wilkinson, Ian B; Screaton, Nick; Loman, Nicholas; Doffinger, Rainer; Lyons, Paul A; Morgan, B Paul; Goodfellow, Ian G; Klenerman, Paul; Lehner, Paul J; Matheson, Nicholas J; Thaventhiran, James E D.

Nat Commun ; 11(1): 6385, 2020 12 14.

Artículo en Inglés | MEDLINE | ID: mdl-33318491

6.

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon.

Naveca, Felipe Gomes; Claro, Ingra; Giovanetti, Marta; de Jesus, Jaqueline Goes; Xavier, Joilson; Iani, Felipe Campos de Melo; do Nascimento, Valdinete Alves; de Souza, Victor Costa; Silveira, Paola Paz; Lourenço, José; Santillana, Mauricio; Kraemer, Moritz U G; Quick, Josh; Hill, Sarah C; Thézé, Julien; Carvalho, Rodrigo Dias de Oliveira; Azevedo, Vasco; Salles, Flavia Cristina da Silva; Nunes, Márcio Roberto Teixeira; Lemos, Poliana da Silva; Candido, Darlan da Silva; Pereira, Glauco de Carvalho; Oliveira, Marluce Aparecida Assunção; Meneses, Cátia Alexandra Ribeiro; Maito, Rodrigo Melo; Cunha, Claudeth Rocha Santa Brígida; Campos, Daniela Palha de Sousa; Castilho, Marcia da Costa; Siqueira, Thalita Caroline da Silva; Terra, Tiza Matos; de Albuquerque, Carlos F Campelo; da Cruz, Laura Nogueira; Abreu, André Luis de; Martins, Divino Valerio; Simoes, Daniele Silva de Moraes Vanlume; Aguiar, Renato Santana de; Luz, Sérgio Luiz Bessa; Loman, Nicholas; Pybus, Oliver G; Sabino, Ester C; Okumoto, Osnei; Alcantara, Luiz Carlos Junior; Faria, Nuno Rodrigues.

PLoS Negl Trop Dis ; 13(3): e0007065, 2019 03.

Artículo en Inglés | MEDLINE | ID: mdl-30845267

7.

Nanopore sequencing and assembly of a human genome with ultra-long reads.

Jain, Miten; Koren, Sergey; Miga, Karen H; Quick, Josh; Rand, Arthur C; Sasani, Thomas A; Tyson, John R; Beggs, Andrew D; Dilthey, Alexander T; Fiddes, Ian T; Malla, Sunir; Marriott, Hannah; Nieto, Tom; O'Grady, Justin; Olsen, Hugh E; Pedersen, Brent S; Rhie, Arang; Richardson, Hollian; Quinlan, Aaron R; Snutch, Terrance P; Tee, Louise; Paten, Benedict; Phillippy, Adam M; Simpson, Jared T; Loman, Nicholas J; Loose, Matthew.

Nat Biotechnol ; 36(4): 338-345, 2018 04.

Artículo en Inglés | MEDLINE | ID: mdl-29431738

8.

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon

Navega, Felipe Gomes; Claro, Ingra Morales; Giovanetti, Marta; Jesus, Jaqueline Goes de; Xavier, Joilson; Iani, Felipe Campos de Melo; Nascimento, Valdinete Alves do; Souza, Victor Costa de; Silveira, Paola Paz; Lourenço, José; Santillana, Mauricio; Kraemer, Moritz U. G; Quick, Josh; Hill, Sarah C; Thézé, Julien; Carvalho, Rodrigo Dias de Oliveira; Azevedo, Vasco; Salles, Flavia Cristina da Silva; Nunes, Márcio Roberto Teixeira; Lemos, Poliana da Silva; Candido, Darlan da Silva; Pereira, Glauco de Carvalho; Oliveira, Marluce Aparecida Assunção; Meneses, Cátia Alexandra Ribeiro; Maito, Rodrigo Melo; Cunha, Claudeth Rocha Santa Brígida; Campos, Daniela Palha de Sousa; Castilho, Marcia da Costa; Siqueira, Thalita Caroline da Silva; Terra, Tiza Matos; Albuquerque, Carlos Frederico Campelo de; Cruz, Laura Nogueira da; Abreu, André Luiz de; Martins, Divino Valerio; Simões, Daniele Silva de Moraes Vanlume; Aguiar, Renato Santana de; Luz, Sérgio Luiz Bessa; Loman, Nicholas; Pybus, Oliver G; Sabino, Ester Cerdeira; Okumoto, Osnei; Alcantara, Luiz Carlos Júnior; Faria, Nuno Rodrigues.

NAVECA, Felipe Gomes et al. Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon. PLoS Neglected Tropical Diseases, v. 13, n. 3, e0007065, p. 1-21, Mar. 2019. DOI: https://doi.org/10.1371/journal.pntd.0007065. Disponível em: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424459/pdf/pntd.0007065.pdf.

Artículo en Inglés | IED | ID: ied-3831

9.

Chikungunya virus outbreak in the Amazon region: replacement of the Asian genotype by an ECSA lineage

Naveca, Felipe Gomes; Claro, Ingra Morales; Giovanetti, Marta; Jesus, Jaqueline Goes de; Xavier, Joilson; Iani, Felipe Campos de Melo; Nascimento, Valdinete Alves do; Souza, Victor Costa de; Silveira, Paola Paz; Lourenço, José; Santillana, Mauricio; Kraemer, Moritz U. G; Quick, Josh; Hill, Sarah C; Thézé, Julien; Carvalho, Rodrigo Dias de Oliveira; Azevedo, Vasco; Sales, Flavia Cristina da Silva; Nunes, Márcio Roberto Teixeira; Lemos, Poliana da Silva; Candido, Darlan da Silva; Pereira, Glauco de Carvalho; Oliveira, Marluce Aparecida Assunção; Meneses, Catia Alexandra Ribeiro; Maito, Rodrigo Melo; Cunha, Claudeth Rocha Santa Brígida; Campos, Daniela Palha de Sousa; Castilho, Marcia da Costa; Siqueira, Thalita Caroline da Silva; Terra, Tiza Matos; Albuquerque, Carlos Frederico Campelo de; Cruz, Laura Nogueira da; Abreu, André Luiz de; Martins, Divino Valerio; Simoes, Daniele Silva de Moraes Vanlume; Aguiar, Renato Santana de; Luz, Sergio Luiz Bessa; Loman, Nicholas; Pybus, Oliver G; Sabino, Ester Cerdeira; Okumoto, Osnei; Alcantara, Luiz Carlos Júnior; Faria, Nuno Rodrigues.

NAVECA, Felipe Gomes et al. Chikungunya virus outbreak in the Amazon region: replacement of the Asian genotype by an ECSA lineage. bioRxiv, e492595, p. 1-41, 2018. DOI: https://doi.org/10.1101/492595. Disponível em: https://www.biorxiv.org/content/10.1101/492595v1.full.pdf.

Artículo en Inglés | IED | ID: ied-3648

10.

Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity

Butera, Yvan; Mukantwari, Enatha; Artesi, Maria; Umuringa, Jeanne d´arc; O`Toole, Áine Niamh; Hill, Verity; Rooke, Stefan; Hong, Samuel Leandro; Dellicou, Simon; Majyambere, Onesphore; Bontems, Sebastien; Boujemla, Bouchra; Quick, Josh; Resende, Paola Cristina; Loman, NIck; Umumararungu, Esperance; Kabanda, Alice; Murindahabi, Marylin Milumbu; Tuyisenge, Patrick; Gashegu, Misbah; Rwabihama, Jean Paul; Sindayiheba, Reuben; Gikic, Djordje; Souopgui, Jacob; Ndifon, Wilfred; Rutayisire, Robert; Gatare, Swaibu; Mpunga, Tharcisse; Ngamije, Daniel; Bours, Vincent; Rambaut, Andrew; Nsanzimana, Sabin; Baele, Guy; Durkin, Keith; Mutesa, Leon; Rujeni, Nadine.

Artículo en Inglés | ARCA | ID: arc-50789

11.

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon

Naveca, Felipe Gomes; Claro, Ingra; Giovanetti, Marta; Jesus, Jaqueline Goes de; Xavier, Joilson; Iani, Felipe Campos de Melo; Nascimento, Valdinete Alves do; Souza, Victor Costa de; Silveira, Paola Paz; Lourenço, José; Santillana, Mauricio; Kraemer, Moritz U. G.; Quick, Josh; Hill, Sarah C.; Thézé, Julien; Carvalho, Rodrigo Dias de Oliveira; Azevedo, Vasco; Salles, Flavia Cristina da Silva; Nunes, Márcio Roberto Teixeira; Lemos, Poliana da Silva; Candido, Darlan da Silva; Pereira, Glauco de Carvalho; Oliveira, Marluce Aparecida Assunção; Meneses, Cátia Alexandra Ribeiro; Maito, Rodrigo Melo; Cunha, Claudeth Rocha Santa Brígida; Campos, Daniela Palha de Sousa; Castilho, Marcia da Costa; Siqueira, Thalita Caroline da Silva; Terra, Tiza Matos; Melo, Carlos Frederico Campelo de Albuquerque e; Cruz, Laura Nogueira da; Abreu, Andre Luiz de; Martins, Divino Valerio; Simoes, Daniele Silva de Moraes Vanlume; Aguiar, Renato Santana de; Luz, Sérgio Luiz Bessa; Loman, Nicholas; Pybus, Oliver G.; Sabino, Ester C.; Okumoto, Osnei; Alcantara,&; 160;Luiz&; 160;Carlos&; 160;Junior; Faria, Nuno Rodrigues.

Artículo en Inglés | ARCA | ID: arc-35316

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Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China.

Telomere-to-telomere assembly of a complete human X chromosome.

Recurrent SARS-CoV-2 mutations in immunodeficient patients.

Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity.

Treatment of COVID-19 with remdesivir in the absence of humoral immunity: a case report.

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon.

Nanopore sequencing and assembly of a human genome with ultra-long reads.

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon

Chikungunya virus outbreak in the Amazon region: replacement of the Asian genotype by an ECSA lineage

Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon