Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia
Jessica E Manning; Jennifer A Bohl; Sreyngim Lay; Sophana Chea; Sovann Ly; Yi Sengdoeurn; Seng Heng; Chan Vuthy; Katarina Kalantar; Vida Ahyong; Michelle Tan; Jonathan Sheu; Christina M Tato; Joseph DeRisi; Laurence Baril; Philippe Dussart; Veasna Duong; Erik A Karlsson.
Preprint
en Inglés
| PREPRINT-BIORXIV | ID: ppbiorxiv-968818
Rapid production and publication of pathogen genome sequences during emerging disease outbreaks provide crucial public health information. In resource-limited settings, especially near an outbreak epicenter, conventional deep sequencing or bioinformatics are often challenging. Here we successfully used metagenomic next generation sequencing on an iSeq100 Illumina platform paired with an open-source bioinformatics pipeline to quickly characterize Cambodias first case of COVID-2019.
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