Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset.

The mustard family (Brassicaceae) is a scientifically and economically important family, containing the model plant Arabidopsis thaliana and numerous crop species that feed billions worldwide. Despite its relevance, most phylogenetic trees of the family are incompletely sampled and often contain poorly supported branches. Here, we present the most complete Brassicaceae genus-level family phylogenies to date (Brassicaceae Tree of Life or BrassiToL) based on nuclear (1,081 genes, 319 of the 349 genera; 57 of the 58 tribes) and plastome (60 genes, 265 genera; all tribes) data. We found cytonuclear discordance between the two, which is likely a result of rampant hybridization among closely and more distantly related lineages. To evaluate the impact of such hybridization on the nuclear phylogeny reconstruction, we performed five different gene sampling routines, which increasingly removed putatively paralog genes. Our cleaned subset of 297 genes revealed high support for the tribes, whereas support for the main lineages (supertribes) was moderate. Calibration based on the 20 most clock-like nuclear genes suggests a late Eocene to late Oligocene origin of the family. Finally, our results strongly support a recently published new family classification, dividing the family into two subfamilies (one with five supertribes), together representing 58 tribes. This includes five recently described or re-established tribes, including Arabidopsideae, a monogeneric tribe accommodating Arabidopsis without any close relatives. With a worldwide community of thousands of researchers working on Brassicaceae and its diverse members, our new genus-level family phylogeny will be an indispensable tool for studies on biodiversity and plant biology.

Linked by Ancestral Bonds: Multiple Whole-Genome Duplications and Reticulate Evolution in a Brassicaceae Tribe.

Pervasive hybridization and whole-genome duplications (WGDs) influenced genome evolution in several eukaryotic lineages. Although frequent and recurrent hybridizations may result in reticulate phylogenies, the evolutionary events underlying these reticulations, including detailed structure of the ancestral diploid and polyploid genomes, were only rarely reconstructed. Here, we elucidate the complex genomic history of a monophyletic clade from the mustard family (Brassicaceae), showing contentious relationships to the early-diverging clades of this model plant family. Genome evolution in the crucifer tribe Biscutelleae (∼60 species, 5 genera) was dominated by pervasive hybridizations and subsequent genome duplications. Diversification of an ancestral diploid genome into several divergent but crossable genomes was followed by hybridizations between these genomes. Whereas a single genus (Megadenia) remained diploid, the four remaining genera originated by allopolyploidy (Biscutella, Lunaria, Ricotia) or autopolyploidy (Heldreichia). The contentious relationships among the Biscutelleae genera, and between the tribe and other early diverged crucifer lineages, are best explained by close genomic relatedness among the recurrently hybridizing ancestral genomes. By using complementary cytogenomics and phylogenomics approaches, we demonstrate that the origin of a monophyletic plant clade can be more complex than a parsimonious assumption of a single WGD spurring postpolyploid cladogenesis. Instead, recurrent hybridization among the same and/or closely related parental genomes may phylogenetically interlink diploid and polyploid genomes despite the incidence of multiple independent WGDs. Our results provide new insights into evolution of early-diverging Brassicaceae lineages and elucidate challenges in resolving the contentious relationships within and between land plant lineages with pervasive hybridization and WGDs.

Naturally-primed life strategy plasticity of dimorphic Aethionema arabicum facilitates optimal habitat colonization.

Plasticity in plant dispersal traits can maximise the ability of a plant species to survive in stressful environments during colonization. Aethionema arabicum (Brassicaceae) is a dimorphic annual species that is hypothesized to survive stressful conditions during colonization due to adaptive plasticity in life-phase (vegetative vs sexual) and fruit morph (dehiscent [DEH] vs indehiscent fruits [IND]). We tested for adaptive plasticity in life-phase and fruit morphs along laboratory environmental stress gradients found in the natural habitats of Ae. arabicum. We considered optimal environmental conditions (750-2000 m above sea level) to be those that resulted in the following fitness parameters: higher biomass and a higher total number of fruits compared to stressful habitats. We found evidence of plasticity in life-phase and fruit-morph along a stressful environmental gradient. High hydrothermal stress proportionally increased the number of dehiscent morphs and non-dormant seeds germinating in autumn. This offsets natural phenology towards dry and cold winter (less hydrothermal stress), yielding fewer fruits that dehisce in the next generation. We conclude that the plastic responses of Ae. arabicum to natural stress gradients constitute a strategy of long-term adaptive benefits and favouring potential pathways of colonisation of the optimal habitat.

Hybridization-facilitated genome merger and repeated chromosome fusion after 8 million years.

The small genus Ricotia (nine species, Brassicaceae) is confined to the eastern Mediterranean. By comparative chromosome painting and a dated multi-gene chloroplast phylogeny, we reconstructed the origin and subsequent evolution of Ricotia. The ancestral Ricotia genome originated through hybridization between two older genomes with n = 7 and n = 8 chromosomes, respectively, on the Turkish mainland during the Early Miocene (c. 17.8 million years ago, Ma). Since then, the allotetraploid (n = 15) genome has been altered by two independent descending dysploidies (DD) to n = 14 in Ricotia aucheri and the Tenuifolia clade (2 spp.). By the Late Miocene (c. 10 Ma), the latter clade started to evolve in the most diverse Ricotia core clade (6 spp.), the process preceded by a DD event to n = 13. It is noteworthy that this dysploidy was mediated by a unique chromosomal rearrangement, merging together the same two chromosomes as were merged during the origin of a fusion chromosome within the paternal n = 7 genome c. 20 Ma. This shows that within a time period of c. 8 Myr genome evolution can repeat itself and that structurally very similar chromosomes may originate repeatedly from the same ancestral chromosomes by different pathways (end-to-end translocation versus nested chromosome insertion).

Arabis watsonii (P.H.Davis) F.K.Mey.: An overlooked cruciferous species from eastern Anatolia and its phylogenetic position.

Arabis watsonii (P.H.Davis) F.K.Mey. was initially reported as Thlaspi watsonii P.H.Davis in Flora of Turkey. Although F.K.Meyer transferred this species to Arabis L., this species has been overlooked and treated as Thlaspi L. in relevant literature for Flora of Turkey. In this study this species was evaluated using molecular (nuclear ITS and plastidic trnL-F sequences) and morphological data. Results clearly show that Arabis watsonii is sister to the Arabis hirsuta aggregate and its relatives. In conclusion, our results increased the number of known Arabis species in Turkey to 23. Furthermore, detailed description and distribution of the species are given and a new IUCN threat category for Arabis watsonii is proposed.

Inferences from an ethnobotanical field expedition in the selected locations of Sivas and Yozgat provinces (Turkey).

ETHNOPHARMACOLOGICAL RELEVANCE: This study was aimed to ascertain the present situation of the traditional knowledge on wild plant utilization for medicinal and dietary purposes in two neighboring provinces, Sivas and Yozgat located in the eastern threshold of Anatolia. MATERIALS AND METHODS: Information was collected by face-to-face interviews with 300 individuals in 20 selected sites. The demographic characteristics of the informants were evaluated and cross-relationships with the recorded data were analyzed by SPSS statistical software. In order to justify the information reliability, "informant's consensus factor" (F(IC)) was estimated and to find the local importance of taxa "use value" (UV) were estimated. RESULTS: Altogether 166 utilizations recorded in the surveyed area were obtained from 100 taxa belonging to 38 plant families. Among these utilizations 89 were medicinal, 54 were used as foodstuff or spice, and 23 were for various other ethnobotanical (animal fodder, etc.) purposes. Those with the highest number of utilized taxa, Asteraceae, Rosaceae, Lamiaceae, Fabaceae and Polygonaceae members were employed for various purposes. Respiratory system disorders and gastrointestinal ailments were the most frequently referred to disease categories for which plant remedies were utilized for treatment. CONCLUSION: The area surveyed is known to have a high rate of migration from countrysides to metropolitan areas in Turkey or abroad to procure employment. Therefore, results of this ethnobotanical survey were important to find out the present situation of traditional knowledge in the area. Demographic data revealed that most of the inhabitants were remigrants from an urban area. Another encouraging point in terms of the Turkish ethnobotanical repository is that they still practice the information transmitted from their ancestors even after long dwelling in metropolitan areas.