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1.
BMC Genom Data ; 23(1): 19, 2022 03 18.
Article in English | MEDLINE | ID: mdl-35303799

ABSTRACT

BACKGROUND: Melanoma Antigen Genes (MAGEs) are a family of genes that have piqued the interest of scientists for their unique expression pattern. The MAGE genes can be classified into type I MAGEs that expressed in testis and other reproductive tissues while type II MAGEs that have broad expression in many tissues. Several MAGE gene families are expressed in embryonic tissues in almost all eukaryotes, which is essential for embryo development mainly during germ cell differentiation. The aim of this study was to analyze the promoter regions and regulatory elements (transcription factors and CpG islands) of MAGE genes encoding for embryonic development in cattle. RESULTS: The in silico analysis revealed the highest promoter prediction scores (1.0) for TSS were obtained for two gene sequences (MAGE B4-like and MAGE-L2) while the lowest promoter prediction scores (0.8) was obtained for MAGE B17-like. It also revealed that the best common motif, motif IV, bear a resemblance with three TF families including Zinc-finger family, SMAD family and E2A related factors. From thirteen identified TFs candidates, majority of them (11/13) were clustered to Zinc-finger family serving as transcriptionally activator role whereas three (SP1, SP3 and Znf423) of them as activator or repressor in response to physiological and pathological stimuli. On the other hand we revealed slightly rich CpG islands in the gene body and promoter regions of MAGE genes encoding for embryonic development in cattle. CONCLUSION: This in silico analysis of gene promoter regions and regulatory elements in MAGE genes could be useful for understanding regulatory networks and gene expression patterns during embryo development in bovine.


Subject(s)
Neoplasms , Transcription Factors , Animals , Cattle/genetics , CpG Islands/genetics , Embryonic Development/genetics , Male , Neoplasms/genetics , Transcription Factors/genetics , Zinc , Zinc Fingers/genetics
2.
Vet Med Int ; 2020: 3075429, 2020.
Article in English | MEDLINE | ID: mdl-32190281

ABSTRACT

A cross-sectional calf mortality study was conducted in urban and periurban dairy farms in Addis Ababa, special zones of Oromia and Amhara regions in July and August 2015. The objectives of the study were to estimate the annual mortality and to assess the major causes of calf mortality in the dairy farms. One-year retrospective data on calf mortality were collected from 330 farms by face-to-face interview using the pretested and structured questionnaire format and direct observation of farm practices. A logistic regression analysis was performed in order to identify the predictor variables associated with early calf mortality. Data were analysed using Statistical Package, Stata SE for Windows, version 12.0. The annual mean calf mortality from birth-to-weaning was reported as 18.5% (95% CI: 12.6, 24.3%). The prenatal loss due to fetal death and stillbirth was 10.1% (95% CI: 6.7, 13.6%). The overall annual loss due to fetal death and calf preweaning mortality was 26.7% (95% CI: 21.2, 32.2%). Age-specific mortality declined with increased age, and the highest mortality was recorded during the first month of life extending up to the third month of age. Disease was the most important causes of calf mortality (73.2%). Among the diseases, diarrhea (63%) and respiratory disorders (17%) were the important causes of calf mortality. Malpractices in calf management were identified, including restricted colostrum and milk feeding, poor care and supplemental feeding, and poor health management. Interventions in dairy cattle health and farm husbandry are recommended to control calf mortality.

3.
Trop Anim Health Prod ; 52(3): 1459-1466, 2020 May.
Article in English | MEDLINE | ID: mdl-31845116

ABSTRACT

Camels (Camelus dromedarius) have access to different browsing plant that is a major source of feed and therapeutic value but also has the potential to cause poisoning to the camel. A survey was conducted between July and September 2017 to generate information on medicinal uses, toxicity, and chemical composition of major browsing plant in the Somali Regional State of Ethiopia. A total of 150 respondents were interviewed using a structured questionnaire, and supplementary information was gathered through field observation and focus group discussions. The study showed 13 medicinal plants as being used by the respondents for the treatment of various camel ailments. The common part of the plant used to treat various aliment was leaves followed by root and bark. Dermal was the preferred route of remedy application followed by oral. The respondents identified 10 major toxic browsing plants. Those plants affect camels mainly in the dry and early rainy seasons when feed supply is scarce. Yet, poisonous browsing plants were the bottleneck problem and a major cause of economic loss in camel production in all study districts despite controlling poisonous plants through the indigenous approach. In total, 12 browse plants relished by camels were subjected to the chemical composition analysis. Laboratory result shown the chemical composition of browsing plants relished by camels has disparity except for the dry matter, and they have moderate crude protein content. Hence, the present study implies that the identified medicinal and preferred browsing plants have a significant contribution in supporting camel production in the pastoral area, but the emphasis should be given to reduce/eradicate poisonous plants that cause acute illness and death of camel.


Subject(s)
Animal Feed , Camelus/physiology , Phytotherapy , Plant Leaves/chemistry , Plants, Medicinal , Seasons , Adult , Animals , Ethiopia , Female , Focus Groups , Humans , Male , Medicine, Traditional , Middle Aged , Phytochemicals , Young Adult
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