Modeling the effect of imported malaria on the elimination programme in KwaZulu-Natal province of South Africa.

Introduction: with imported malaria cases in a given population, the question arises as to what extent the local cases are a consequence of the imports or not. We perform a modeling analysis for a specific area, in a region aspiring for malaria-free status. Methods: data on malaria cases over ten years is subjected to a compartmental model which is assumed to be operating close to the equilibrium state. Two of the parameters of the model are fitted to the decadal data. The other parameters in the model are sourced from the literature. The model is utilized to simulate the malaria prevalence with or without imported cases. Results: in any given year the annual average of 460 imported cases, resulted in an end-of-year season malaria prevalence of 257 local active infectious cases, whereas without the imports the malaria prevalence at the end of the season would have been fewer than 10 active infectious cases. We calculate the numerical value of the basic reproduction number for the model, which reveals the extent to which the disease is being eliminated from the population or not. Conclusion: without the imported cases, over the ten seasons of malaria, 2008-2018, the KwaZulu-Natal province would have been malaria-free over at least the last 7 years of the decade indicated. This simple methodology works well even in situations where data is limited.

Socio-economic predictors of uptake of malaria interventions among pregnant women and mothers of under 5 children in Oyo State, Nigeria: a cross-sectional study.

Introduction: socio-economic status (SES), especially for women, influence access to care. This study aimed to determine the relationship between SES and uptake of malaria intervention by pregnant women and non-pregnant mothers of children under 5 years old in Ibadan, Oyo state, Nigeria. Methods: this cross-sectional study was conducted at Adeoyo teaching hospital located in Ibadan, Nigeria. The hospital-based study population included consenting mothers. Data were collected using an interviewer-administered modified validated demographic health survey questionnaire. The statistical analysis involved both descriptive (mean, count, frequency) and inferential statistics (Chi-square, logistic regression). Level of statistical significance was set at 0.05. Results: mean age of the study´s total of 1373 respondents was 29 years (SD: 5.2). Of these, 60% (818) were pregnant. The non-pregnant mothers of children under five years old showed a significantly increased odds (OR: 7.55, 95% CI: 3.81, 14.93) for the uptake of malaria intervention. Within the low SES category, women aged 35 years and above were significantly less likely to utilize malaria intervention (OR=0.08; 95% CI: 0.01-0.46; p=0.005) compared to those younger. In the middle SES, women who have one or two children were 3.51 times more likely than women with three or more children to utilize malaria intervention (OR=3.51; 95% CI: 1.67-7.37; p=0.001). Conclusion: the findings provide evidence that age, maternal grouping, and parity within the SES category can significantly impact on uptake of malaria interventions. There is a need for strategies to boost the SES of women because they play significant roles in the wellbeing of members of the home.

A model of malaria population dynamics with migrants.

We present a compartmental model in ordinary differential equations of malaria disease transmission, accommodating the effect of indoor residual spraying on the vector population. The model allows for influx of infected migrants into the host population and for outflow of recovered migrants. The system is shown to have positive solutions. In the special case of no infected immigrants, we prove global stability of the disease-free equilibrium. Existence of a unique endemic equilibrium point is also established for the case of positive influx of infected migrants. As a case study we consider the combined South African malaria region. Using data covering 31 years, we quantify the effect of malaria infected immigrants on the South African malaria region.

Comparison of Predictive Models and Impact Assessment of Lockdown for COVID-19 over the United States.

The novel Coronavirus Disease 2019 (COVID-19) remains a worldwide threat to community health, social stability, and economic development. Since the first case was recorded on December 29, 2019, in Wuhan of China, the disease has rapidly extended to other nations of the world to claim many lives, especially in the USA, the United Kingdom, and Western Europe. To stay ahead of the curve consequent of the continued increase in case and mortality, predictive tools are needed to guide adequate response. Therefore, this study aims to determine the best predictive models and investigate the impact of lockdown policy on the USA' COVID-19 incidence and mortality. This study focuses on the statistical modelling of the USA daily COVID-19 incidence and mortality cases based on some intuitive properties of the data such as overdispersion and autoregressive conditional heteroscedasticity. The impact of the lockdown policy on cases and mortality was assessed by comparing the USA incidence case with that of Sweden where there is no strict lockdown. Stochastic models based on negative binomial autoregressive conditional heteroscedasticity [NB INGARCH (p,q)], the negative binomial regression, the autoregressive integrated moving average model with exogenous variables (ARIMAX) and without exogenous variables (ARIMA) models of several orders are presented, to identify the best fitting model for the USA daily incidence cases. The performance of the optimal NB INGARCH model on daily incidence cases was compared with the optimal ARIMA model in terms of their Akaike Information Criteria (AIC). Also, the NB model, ARIMA model and without exogenous variables are formulated for USA daily COVID-19 death cases. It was observed that the incidence and mortality cases show statistically significant increasing trends over the study period. The USA daily COVID-19 incidence is autocorrelated, linear and contains a structural break but exhibits autoregressive conditional heteroscedasticity. Observed data are compared with the fitted data from the optimal models. The results further indicate that the NB INGARCH fits the observed incidence better than ARIMA while the NB models perform better than the optimal ARIMA and ARIMAX models for death counts in terms of AIC and root mean square error (RMSE). The results show a statistically significant relationship between the lockdown policy in the USA and incidence and death counts. This suggests the efficacy of the lockdown policy in the USA.

Epidemiology of COVID-19 and Predictors of Outcome in Nigeria: A Single-Center Study.

There is a paucity of information regarding the epidemiology and outcome of COVID-19 from low/middle-income countries, including from Nigeria. This single-center study described the clinical features, laboratory findings, and predictors of in-hospital mortality of COVID-19 patients. Patients admitted between April 10, 2020 and June 10, 2020 were included. Forty-five patients with a mean age of 43 (16) years, predominantly male (87%), presented with fever (38%), cough (29%), or dyspnea (24%). In-hospital mortality was 16%. The independent predictors of mortality were hypoxemia (adjusted odds ratio [aOR]: 2.5; 95% CI: 1.3-5.1) and creatinine > 1.5 mg/dL (aOR: 4.3; 95% CI: 1.9-9.8).

Impact of COVID-19 prevalence and mode of transmission on mortality cases over WHO regions.

With the current outbreak of coronavirus disease 2019 (COVID-19), countries have been on rising preparedness to detect and isolate any imported and locally transmitted cases of the disease. It is observed that mode of transmission of the disease varies from one country to the other. Recent studies have shown that COVID-19 cases are not influenced by race and weather conditions. In this study, effect of modes of transmission of COVID-19 is considered with respect to prevalence and mortality counts in World Health Organisation (WHO) regions. Also, a negative binomial model is formulated for new death cases in all WHO regions as a function of confirmed cases, confirmed new cases, total deaths and modes of transmission, with the goal of identifying a model that predicts the total new death cases the best. Results from this study show that there is strong linear relationship among the COVID-19 confirmed cases, total new deaths and mode of transmission in all WHO regions. Findings highlight the significant roles of modes of transmission on total new death cases over WHO regions. Mode of transmission based on community transmission and clusters of cases significantly affects the number of new deaths in WHO regions. Vuong test shows that the formulated negative binomial model fits the data better than the null model.

Rainfall Trends and Malaria Occurrences in Limpopo Province, South Africa.

This contribution aims to investigate the influence of monthly total rainfall variations on malaria transmission in the Limpopo Province. For this purpose, monthly total rainfall was interpolated from daily rainfall data from weather stations. Annual and seasonal trends, as well as cross-correlation analyses, were performed on time series of monthly total rainfall and monthly malaria cases in five districts of Limpopo Province for the period of 1998 to 2017. The time series analysis indicated that an average of 629.5 mm of rainfall was received over the period of study. The rainfall has an annual variation of about 0.46%. Rainfall amount varied within the five districts, with the northeastern part receiving more rainfall. Spearman's correlation analysis indicated that the total monthly rainfall with one to two months lagged effect is significant in malaria transmission across all the districts. The strongest correlation was noticed in Vhembe (r = 0.54; p-value = <0.001), Mopani (r = 0.53; p-value = <0.001), Waterberg (r = 0.40; p-value =< 0.001), Capricorn (r = 0.37; p-value = <0.001) and lowest in Sekhukhune (r = 0.36; p-value = <0.001). Seasonally, the results indicated that about 68% variation in malaria cases in summer-December, January, and February (DJF)-can be explained by spring-September, October, and November (SON)-rainfall in Vhembe district. Both annual and seasonal analyses indicated that there is variation in the effect of rainfall on malaria across the districts and it is seasonally dependent. Understanding the dynamics of climatic variables annually and seasonally is essential in providing answers to malaria transmission among other factors, particularly with respect to the abrupt spikes of the disease in the province.

A Dynamical and Zero-Inflated Negative Binomial Regression Modelling of Malaria Incidence in Limpopo Province, South Africa.

Recent studies have considered the connections between malaria incidence and climate variables using mathematical and statistical models. Some of the statistical models focused on time series approach based on Box-Jenkins methodology or on dynamic model. The latter approach allows for covariates different from its original lagged values, while the Box-Jenkins does not. In real situations, malaria incidence counts may turn up with many zero terms in the time series. Fitting time series model based on the Box-Jenkins approach and ARIMA may be spurious. In this study, a zero-inflated negative binomial regression model was formulated for fitting malaria incidence in Mopani and Vhembe-two of the epidemic district municipalities in Limpopo, South Africa. In particular, a zero-inflated negative binomial regression model was formulated for daily malaria counts as a function of some climate variables, with the aim of identifying the model that best predicts reported malaria cases. Results from this study show that daily rainfall amount and the average temperature at various lags have a significant influence on malaria incidence in the study areas. The significance of zero inflation on the malaria count was examined using the Vuong test and the result shows that zero-inflated negative binomial regression model fits the data better. A dynamical climate-based model was further used to investigate the population dynamics of mosquitoes over the two regions. Findings highlight the significant roles of Anopheles arabiensis on malaria transmission over the regions and suggest that vector control activities should be intense to eradicate malaria in Mopani and Vhembe districts. Although An. arabiensis has been identified as the major vector over these regions, our findings further suggest the presence of additional vectors transmitting malaria in the study regions. The findings from this study offer insight into climate-malaria incidence linkages over Limpopo province of South Africa.

Exploring the Influence of Daily Climate Variables on Malaria Transmission and Abundance of Anopheles arabiensis over Nkomazi Local Municipality, Mpumalanga Province, South Africa.

The recent resurgence of malaria incidence across epidemic regions in South Africa has been linked to climatic and environmental factors. An in-depth investigation of the impact of climate variability and mosquito abundance on malaria parasite incidence may therefore offer useful insight towards the control of this life-threatening disease. In this study, we investigate the influence of climatic factors on malaria transmission over Nkomazi Municipality. The variability and interconnectedness between the variables were analyzed using wavelet coherence analysis. Time-series analyses revealed that malaria cases significantly declined after the outbreak in early 2000, but with a slight increase from 2015. Furthermore, the wavelet coherence and time-lagged correlation analyses identified rainfall and abundance of Anopheles arabiensis as the major variables responsible for malaria transmission over the study region. The analysis further highlights a high malaria intensity with the variables from 1998-2002, 2004-2006, and 2010-2013 and a noticeable periodicity value of 256-512 days. Also, malaria transmission shows a time lag between one month and three months with respect to mosquito abundance and the different climatic variables. The findings from this study offer a better understanding of the importance of climatic factors on the transmission of malaria. The study further highlights the significant roles of An. arabiensis on malaria occurrence over Nkomazi. Implementing the mosquito model to predict mosquito abundance could provide more insight into malaria elimination or control in Africa.

Exploring the Impact of Climate Variability on Malaria Transmission Using a Dynamic Mosquito-Human Malaria Model.

INTRODUCTION: The reasons for malaria resurgence mostly in Africa are yet to be well understood. Although the causes are often linked to regional climate change, it is important to understand the impact of climate variability on the dynamics of the disease. However, this is almost impossible without adequate long-term malaria data over the study areas. METHODS: In this study, we develop a climate-based mosquito-human malaria model to study malaria dynamics in the human population over KwaZulu-Natal, one of the epidemic provinces in South Africa, from 1970-2005. We compare the model output with available observed monthly malaria cases over the province from September 1999 to December 2003. We further use the model outputs to explore the relationship between the climate variables (rainfall and temperature) and malaria incidence over the province using principal component analysis, wavelet power spectrum and wavelet coherence analysis. The model produces a reasonable fit with the observed data and in particular, it captures all the spikes in malaria prevalence. RESULTS: Our results highlight the importance of climate factors on malaria transmission and show the seasonality of malaria epidemics over the province. Results from the principal component analyses further suggest that, there are two principal factors associated with climates variables and the model outputs. One of the factors indicate high loadings on Susceptible, Exposed and Infected human, while the other is more correlated with Susceptible and Recovered humans. However, both factors reveal the inverse correlation between Susceptible-Infected and Susceptible-Recovered humans respectively. Through the spectrum analysis, we notice a strong annual cycle of malaria incidence over the province and ascertain a dominant of one year periodicity. Consequently, our findings indicate that an average of 0 to 120-day lag is generally noted over the study period, but the 120-day lag is more associated with temperature than rainfall. This is consistence with other results obtained from our analyses that malaria transmission is more tightly coupled with temperature than with rainfall in KwaZulu-Natal province.

Behavioral, climatic, and environmental risk factors for Zika and Chikungunya virus infections in Rio de Janeiro, Brazil, 2015-16.

The burden of arboviruses in the Americas is high and may result in long-term sequelae with infants disabled by Zika virus infection (ZIKV) and arthritis caused by infection with Chikungunya virus (CHIKV). We aimed to identify environmental drivers of arbovirus epidemics to predict where the next epidemics will occur and prioritize municipalities for vector control and eventual vaccination. We screened sera and urine samples (n = 10,459) from residents of 48 municipalities in the state of Rio de Janeiro for CHIKV, dengue virus (DENV), and ZIKV by molecular PCR diagnostics. Further, we assessed the spatial pattern of arbovirus incidence at the municipal and neighborhood scales and the timing of epidemics and major rainfall events. Lab-confirmed cases included 1,717 infections with ZIKV (43.8%) and 2,170 with CHIKV (55.4%) and only 29 (<1%) with DENV. ZIKV incidence was greater in neighborhoods with little access to municipal water infrastructure (r = -0.47, p = 1.2x10-8). CHIKV incidence was weakly correlated with urbanization (r = 0.2, p = 0.02). Rains began in October 2015 and were followed one month later by the largest wave of ZIKV epidemic. ZIKV cases markedly declined in February 2016, which coincided with the start of a CHIKV outbreak. Rainfall predicted ZIKV and CHIKV with a lead time of 3 weeks each time. The association between rainfall and epidemics reflects vector ecology as the larval stages of Aedes aegypti require pools of water to develop. The temporal dynamics of ZIKV and CHIKV may be explained by the shorter incubation period of the viruses in the mosquito vector; 2 days for CHIKV versus 10 days for ZIKV.

Modelling the influence of temperature and rainfall on the population dynamics of Anopheles arabiensis.

BACKGROUND: Malaria continues to be one of the most devastating diseases in the world, killing more humans than any other infectious disease. Malaria parasites are entirely dependent on Anopheles mosquitoes for transmission. For this reason, vector population dynamics is a crucial determinant of malaria risk. Consequently, it is important to understand the biology of malaria vector mosquitoes in the study of malaria transmission. Temperature and precipitation also play a significant role in both aquatic and adult stages of the Anopheles. METHODS: In this study, a climate-based, ordinary-differential-equation model is developed to analyse how temperature and the availability of water affect mosquito population size. In the model, the influence of ambient temperature on the development and the mortality rate of Anopheles arabiensis is considered over a region in KwaZulu-Natal Province, South Africa. In particular, the model is used to examine the impact of climatic factors on the gonotrophic cycle and the dynamics of mosquito population over the study region. RESULTS: The results fairly accurately quantify the seasonality of the population of An. arabiensis over the region and also demonstrate the influence of climatic factors on the vector population dynamics. The model simulates the population dynamics of both immature and adult An. arabiensis. The simulated larval density produces a curve which is similar to observed data obtained from another study. CONCLUSION: The model is efficiently developed to predict An. arabiensis population dynamics, and to assess the efficiency of various control strategies. In addition, the model framework is built to accommodate human population dynamics with the ability to predict malaria incidence in future.