ABSTRACT
Mangifera indica (Mango) is an important fruit crop in tropical countries with India being the leading producer in the world. Substantial research efforts are being devoted to produce fruit that have desirable characteristics including those that pertain to taste, hardiness and resistance to pests. Characterization of the genome and proteome of mango would help in the improvement of cultivars. As the mango genome has not yet been sequenced, we employed a mass spectrometry-based approach followed by database searches of mango-derived ESTs and proteins along with proteins from six other closely related plant species to characterize its proteome. In addition to this, de novo sequencing followed by homology-based protein identification was also carried out. The LC-MS/MS analysis of the mango leaf proteome was performed using an accurate mass quadrupole time-of-flight mass spectrometer. This integrative approach enabled the identification of 1001 peptides that matched to 538 proteins. To our knowledge, this study is the first high-throughput analysis of mango leaf proteome and could pave the way for further genomic, transcriptomic and proteomic studies.
Subject(s)
Mangifera/chemistry , Plant Proteins/chemistry , Amino Acid Sequence , Chromatography, Liquid , Expressed Sequence Tags , Fruit/chemistry , Genome, Plant , Molecular Sequence Data , Plant Leaves/chemistry , Proteome/analysis , Proteomics , Tandem Mass SpectrometryABSTRACT
Sharing proteomic data with the biomedical community through a unified proteomic resource, especially in the context of individual proteins, is a challenging prospect. We have developed a community portal, designated as Human Proteinpedia (http://www.humanproteinpedia.org/), for sharing both unpublished and published human proteomic data through the use of a distributed annotation system designed specifically for this purpose. This system allows laboratories to contribute and maintain protein annotations, which are also mapped to the corresponding proteins through the Human Protein Reference Database (HPRD; http://www.hprd.org/). Thus, it is possible to visualize data pertaining to experimentally validated posttranslational modifications (PTMs), protein isoforms, protein-protein interactions (PPIs), tissue expression, expression in cell lines, subcellular localization and enzyme substrates in the context of individual proteins. With enthusiastic participation of the proteomics community, the past 15 months have witnessed data contributions from more than 75 labs around the world including 2710 distinct experiments, >1.9 million peptides, >4.8 million MS/MS spectra, 150,368 protein expression annotations, 17,410 PTMs, 34,624 PPIs and 2906 subcellular localization annotations. Human Proteinpedia should serve as an integrated platform to store, integrate and disseminate such proteomic data and is inching towards evolving into a unified human proteomics resource.
Subject(s)
Databases, Protein , Proteome/metabolism , Proteomics , Enzymes/metabolism , Humans , Protein Interaction Mapping , Protein Processing, Post-Translational , Proteome/analysis , Tissue Distribution , Vocabulary, ControlledABSTRACT
This work attempts to elucidate the effects of different operational variables affecting the mechanistic function of fly ash for removal of some priority organic pollutants viz. phenol and its analogues. Thermodynamic parameters like free energy change, enthalpy and entropy of the process, as well as the sorption isotherms for phenols on fly ash, were measured and the most suitable isotherm was determined. Results of the study indicate that the extent of solute removal is determined by the initial solute concentration, molecular size and molecular arrangement of the solute. At the fixed set of experimental conditions, a model equation can be developed from which the percent removal corresponding to the load of the particular solute is determined. It is assumed that the mechanism of adsorption is governed by the surface characteristics of fly ash; pH has a vital role in influencing the solute removal as both the ionizing power (acidity, pKa) of the solutes and the zero point charge of fly ash (pH(ZPC)) depend on the solution pH. Isotherm pattern and the free energy change indicate that the process is favorable, as well as spontaneous. The information gathered from the study will serve as a predictive modeling procedure for the analysis and design of the removal of organic pollutants and decontamination of water. The leaching experiment indicates that the retained solutes do not release from fly ash. The retained solutes can be recovered and utilized as industrial raw material.
Subject(s)
Carbon/chemistry , Models, Theoretical , Phenol/chemistry , Water Pollutants, Chemical/isolation & purification , Water/chemistry , Adsorption , Coal Ash , Hydrogen-Ion Concentration , Industrial Waste , Particulate Matter , Time FactorsABSTRACT
The kinetic aspects of adsorption of some priority organic pollutants, viz., phenol (hydroxybenzene), o-hydroxyphenol (1,2-dihydroxybenzene), m-hydroxyphenol (1,3-dihydroxybenzene), and 4-nitrophenol (1-hydroxy-4-nitrobenzene), on fly ash have been studied. The process is found to be of complex nature consisting of both surface adsorption and pore diffusion, the extent being estimated from the diffusion coefficient value. Activation parameter data for the ultimate adsorption as well as the pore diffusion are also evaluated. The data indicate that in the studied solute concentration range, external transport mainly governs the rate-limiting process.
