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1.
PLoS One ; 9(10): e108177, 2014.
Article in English | MEDLINE | ID: mdl-25271778

ABSTRACT

Modelled as finite homogeneous Markov chains, probabilistic cellular automata with local transition probabilities in (0, 1) always posses a stationary distribution. This result alone is not very helpful when it comes to predicting the final configuration; one needs also a formula connecting the probabilities in the stationary distribution to some intrinsic feature of the lattice configuration. Previous results on the asynchronous cellular automata have showed that such feature really exists. It is the number of zero-one borders within the automaton's binary configuration. An exponential formula in the number of zero-one borders has been proved for the 1-D, 2-D and 3-D asynchronous automata with neighborhood three, five and seven, respectively. We perform computer experiments on a synchronous cellular automaton to check whether the empirical distribution obeys also that theoretical formula. The numerical results indicate a perfect fit for neighbourhood three and five, which opens the way for a rigorous proof of the formula in this new, synchronous case.


Subject(s)
Cell Biology , Models, Biological , Algorithms
2.
J Comput Biol ; 21(9): 699-708, 2014 Sep.
Article in English | MEDLINE | ID: mdl-24999557

ABSTRACT

Cellular automata are binary lattices used for modeling complex dynamical systems. The automaton evolves iteratively from one configuration to another, using some local transition rule based on the number of ones in the neighborhood of each cell. With respect to the number of cells allowed to change per iteration, we speak of either synchronous or asynchronous automata. If randomness is involved to some degree in the transition rule, we speak of probabilistic automata, otherwise they are called deterministic. With either type of cellular automaton we are dealing with, the main theoretical challenge stays the same: starting from an arbitrary initial configuration, predict (with highest accuracy) the end configuration. If the automaton is deterministic, the outcome simplifies to one of two configurations, all zeros or all ones. If the automaton is probabilistic, the whole process is modeled by a finite homogeneous Markov chain, and the outcome is the corresponding stationary distribution. Based on our previous results for the asynchronous case-connecting the probability of a configuration in the stationary distribution to its number of zero-one borders-the article offers both numerical and theoretical insight into the long-term behavior of synchronous cellular automata.


Subject(s)
Models, Statistical , Algorithms , Computer Simulation , Markov Chains
3.
IEEE Trans Cybern ; 43(5): 1462-72, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23757563

ABSTRACT

Evolutionary algorithms (EAs) are random optimization methods inspired by genetics and natural selection, resembling simulated annealing. We develop a method that can be used to find a meaningful tradeoff between the difficulty of the analysis and the algorithms' efficiency. Since the case of a discrete search space has been studied extensively, we develop a new stochastic model for the continuous n-dimensional case. Our model uses renewal processes to find global convergence conditions. A second goal of the paper is the analytical estimation of the computation time of EA with uniform mutation inside the (hyper)-sphere of volume 1, minimizing a quadratic function.


Subject(s)
Algorithms , Biomimetics/methods , Evolution, Molecular , Models, Genetic , Models, Statistical , Computer Simulation , Stochastic Processes
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