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1.
Mol Biol Evol ; 29(6): 1599-613, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22319148

ABSTRACT

The human ZC3HAV1 gene encodes an antiviral protein. The longest splicing isoform of ZC3HAV1 contains a C-terminal PARP-like domain, which has evolved under positive selection in primates. We analyzed the evolutionary history of this same domain in humans and in Pan troglodytes. We identified two variants that segregate in both humans and chimpanzees; one of them (rs3735007) does not occur at a hypermutable site and accounts for a nonsynonymous substitution (Thr851Ile). The probability that the two trans-specific polymorphisms have occurred independently in the two lineages was estimated to be low (P = 0.0054), suggesting that at least one of them has arisen before speciation and has been maintained by selection. Population genetic analyses in humans indicated that the region surrounding the shared variants displays strong evidences of long-standing balancing selection. Selection signatures were also observed in a chimpanzee population sample. Inspection of 1000 Genomes data confirmed these findings but indicated that search for selection signatures using low-coverage whole-genome data may need masking of repetitive sequences. A case-control study of more than 1,000 individuals from mainland Italy indicated that the Thr851Ile SNP is significantly associated with susceptibility to multiple sclerosis (MS) (odds ratio [OR] = 1.47, 95% confidence intervals [CI]: 1.08-1.99, P = 0.011). This finding was confirmed in a larger sample of 4,416 Sardinians cases/controls (OR = 1.18, 95% CI: 1.037-1.344, P = 0.011), but not in a population from Belgium. We provide one of the first instances of human/chimpanzee trans-specific coding variant located outside the major histocompatibility complex region. The selective pressure is likely to be virus driven; in modern populations, this variant associates with susceptibility to MS, possibly via the interaction with environmental factors.


Subject(s)
Genetic Predisposition to Disease , Multiple Sclerosis/genetics , Polymorphism, Single Nucleotide , RNA-Binding Proteins/genetics , Selection, Genetic , Acebutolol , Animals , Case-Control Studies , Gene-Environment Interaction , Genetic Association Studies , Genome, Human , Haplotypes , Humans , Linkage Disequilibrium , Models, Genetic , Odds Ratio , Pan troglodytes/genetics , Phylogeny , Protein Isoforms/chemistry , Protein Isoforms/genetics , Protein Structure, Tertiary , RNA-Binding Proteins/chemistry , Sequence Analysis, DNA
2.
Genes Immun ; 11(2): 173-80, 2010 Mar.
Article in English | MEDLINE | ID: mdl-19907433

ABSTRACT

Previous studies reported an association with multiple sclerosis (MS) of distinct HLA-class I markers, namely HLA-A*02, HLA-Cw*05 and MOG-142L. In this work, we tested the association with MS of A*02 and Cw*05 in 1273 Italian MS patients and 1075 matched controls, which were previously analyzed for MOG-142, and explored the relationship among these three markers in modulating MS risk. HLA-A*02 conferred a statistically robust MS protection (odds ratio, OR=0.61; 95% confidence intervals, CI=0.51-0.72, P<10(-9)), which was independent of DRB1*15 and of any other DRB1* allele and remained similar after accounting for the other two analyzed class I markers. Conversely, the protective effect we previously observed for MOG-142L was secondary to its linkage disequilibrium with A*02. Cw*05 was not associated considering the whole sample, but its presence significantly enhanced the protection in the HLA-A*02-positive group, independently of DRB1: the OR conferred by A*02 in Cw*05-positive individuals (0.22, 95% CI=0.13-0.38) was significantly lower than in Cw*05-negative individuals (0.69, 95% CI=0.58-0.83) with a significant (P=4.94 x 10(-5)) multiplicative interaction between the two markers. In the absence of A*02, Cw*05 behaved as a risk factor, particularly in combination with DRB1*03 (OR=3.89, P=0.0006), indicating that Cw*05 might be a marker of protective or risk haplotypes, respectively.


Subject(s)
Disease Susceptibility/immunology , Genetic Markers/genetics , HLA-A Antigens/genetics , Multiple Sclerosis/genetics , Population Groups/genetics , Alleles , HLA-A Antigens/immunology , Haplotypes , Humans , Italy , Linkage Disequilibrium , Multiple Sclerosis/immunology , Myelin Proteins , Myelin-Associated Glycoprotein/genetics , Myelin-Associated Glycoprotein/immunology , Myelin-Oligodendrocyte Glycoprotein , Odds Ratio , Risk Factors
3.
Eur J Neurol ; 16(11): 1240-5, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19538209

ABSTRACT

BACKGROUND AND PURPOSE: A possible association between Parkinson's disease (PD) and the polymorphism of Brain Derived Neurotrophic Factor (BDNF) G196A (Val66Met) has been suggested by different studies that nevertheless yielded-contrasting result. The purpose of this study was to analyze such possible association in a cohort of Italian PD patients. METHODS: The BDNF polymorphisms were analyzed in 294 Italian patients with PD; results were compared to those obtained in 233 age- and sex-matched healthy controls (HC) enrolled from two tertiary centres in Italy. Polymorphisms were determined by Restriction Fragment Length Polymorphism (RFLP) analysis; correlations between BDNF G196A polymorphism, and cognitive function were established by sub analyzing the results upon dividing PD patients based on their Mini Mental State Examination (MMSE) score. RESULTS: Univariate analysis showed a highly significant correlation between the BDNF(AA) genotype and a MMSE score < or =24. Hence, the distribution of this genotype in PD individuals with a MMSE score < or =24 was significantly increased compared to PD patients with an MMSE score >24 and HC (P < 0.001 in both cases). Multivariate analyses showed that BDNF (AA) genotype was associated to a sixfold risk of cognitive impairment. CONCLUSIONS: The BDNF(AA) homozygote genotype is over-represented in PD patients compared with normal individuals; this genotype was significantly correlated to cognitive impairment, age and disease severity. These results, although preliminary, could be important in establishing novel diagnostic and therapeutic approaches to PD.


Subject(s)
Brain-Derived Neurotrophic Factor/genetics , Cognition Disorders/genetics , Parkinson Disease/genetics , Adult , Aged , Aged, 80 and over , Alleles , Chi-Square Distribution , Female , Gene Frequency , Genetic Predisposition to Disease , Genotype , Humans , Italy , Male , Middle Aged , Neuropsychological Tests , Polymorphism, Single Nucleotide/genetics , Regression Analysis , Reverse Transcriptase Polymerase Chain Reaction , Severity of Illness Index
4.
Int J Immunopathol Pharmacol ; 22(4): 991-9, 2009.
Article in English | MEDLINE | ID: mdl-20074462

ABSTRACT

In this study, the distribution of HLA-A alleles was analyzed in Italian Alzheimer's Disease (AD)patients. Interaction between HLA alleles, APOE genotypes, age of onset, and gender were also analyzed. The results were compared to those obtained in healthy controls (HC). One hundred-seventy-three AD patients and 258 age-and-sex-matched healthy controls were enrolled in the study. AD patients were classified according to age at the onset of disease using quartiles of the distribution. HLA-A genotyping was performed by PCR-SSP; APOE genotyping was performed by RFLP. A correlation between late disease onset and HLA-A*01 was observed. Thus, HLA-A*01, calculated as number of alleles, was significantly more present in patients with age of onset > 74.0 years than in HC (20% vs 10.5%; p=0.014); the distribution of this allele was skewed also in patients 68.1-74 years of age (16.3%), even if the difference did not reach statistical significance. The relative risk ratio (RRR) of AD onset calculated by a multinomial logistic regression adjusted for sex and presence of APOE-4 confirmed a significant association of HLA-A*01 with AD onset > 74.0 years of age (RRR=2.2; 95%CI: 1.1-4.6; p=0.033). A high RRR (2.04) was also present in patients 68.1-74 years (p=0.064). Lower age of disease onset did not correlate with HLA-A*01. Data herein suggest that the presence of HLA-A*01 results in delayed AD development, even in patients carrying APOE-4. These results could offer new insights into the etiopathogenesis of Alzheimer's disease.


Subject(s)
Alzheimer Disease/genetics , HLA-A Antigens/genetics , Age of Onset , Aged , Alzheimer Disease/ethnology , Alzheimer Disease/immunology , Apolipoprotein E4/genetics , Case-Control Studies , Female , Gene Frequency , Genetic Predisposition to Disease , HLA-A Antigens/immunology , Humans , Italy/epidemiology , Logistic Models , Male , Middle Aged , Phenotype , Polymerase Chain Reaction , Polymorphism, Restriction Fragment Length , Risk Assessment , Risk Factors , Sex Factors
5.
Neuromuscul Disord ; 18(12): 967-9, 2008 Dec.
Article in English | MEDLINE | ID: mdl-18789688

ABSTRACT

The frequency of HLA-DRB1*15 polymorphism, which is strongly associated to multiple sclerosis, was investigated in 84 adult patients with chronic dysimmune polyneuropathy and 272 healthy controls. No significant differences were detected between cases and controls and, among patients, according to gender, peripheral nerve antigen antibody seropositivity, and electrophysiological features. A trend towards an increase of HLA-DRB1*11 in anti-MAG neuropathy was detected.


Subject(s)
HLA-DR Antigens/genetics , Polymorphism, Genetic , Polyneuropathies/genetics , Aged , Chronic Disease , Enzyme-Linked Immunosorbent Assay , Female , Gene Frequency , Genetic Predisposition to Disease , HLA-DR Antigens/metabolism , HLA-DRB1 Chains , Humans , Male , Middle Aged , Polymerase Chain Reaction , Polyneuropathies/metabolism , Polyneuropathies/pathology
6.
Genes Immun ; 9(1): 7-15, 2008 Jan.
Article in English | MEDLINE | ID: mdl-17928868

ABSTRACT

Several studies suggest that the histocompatibility complex (HLA) class I region harbours genes modulating multiple sclerosis (MS) susceptibility independently from the effect of class II alleles. A candidate gene in this region is MOG, encoding the myelin oligodendrocyte glycoprotein. A significant association with the missense variation V142L (rs2857766) was previously reported in a small sample of 50 Italian MS patients. We confirmed this result in two independent Italian sample sets consisting of 878 MS patients and 890 matched controls (P=6.6 x 10(-4)) and 246 trio families (P=1.5 x 10(-3)). The comparison of genotype frequencies suggested a dominant-protective effect of L142. In the combined sample sets L142 conferred an odds ratio (OR)=0.70 (95% confidence interval (CI): 0.60-0.82) that remained similar after accounting for HLA-DRB1(*)15 carrier status. The association with MOG V142L was still significant after conditioning for all DRB1 alleles (P=0.035). Eleven additional single nucleotide polymorphisms in the MOG gene (namely -1077T/C, -910T/C, -875A/G, -93T/C, S5S, Indel L22, V145I, +814C/T, +900A/G, +1024A/T, +1059C/T), two microsatellites in the MOG 5' flanking (MOGCA) and 3' untranslated (MOGTAAA) regions and four microsatellites in the HLA-class I region, from HLA-B to HFE, (namely MIB, D6S265, D6S1683 and D6S2239) were tested by transmission disequilibrium test in 199 trio families. None of these polymorphisms or of their haplotypic combinations showed a significant transmission distortion, in the absence of V142L. In conclusion, MOG V142L, or an untested variant in tight-linkage disequilibrium with it, is an independent MS susceptibility-modulating factor in the HLA class I region.


Subject(s)
Genetic Predisposition to Disease , Genetic Variation , Multiple Sclerosis/genetics , Myelin-Associated Glycoprotein/genetics , Alleles , Case-Control Studies , Family , Female , Gene Frequency , Genetic Markers , HLA Antigens/genetics , Humans , Italy , Linkage Disequilibrium , Logistic Models , Male , Microsatellite Repeats , Myelin Proteins , Myelin-Oligodendrocyte Glycoprotein , Pedigree , Polymorphism, Single Nucleotide
7.
G Chir ; 15(8-9): 359-62, 1994.
Article in Italian | MEDLINE | ID: mdl-7803209

ABSTRACT

Acute pancreatitis is one of the most serious complications in endoscopic cholangio-pancreatography (ERCP) and endoscopic sphincterotomy (EPT). Many attempts to avoid such complication have proved to be unsuccessful. The aim of this study was to evaluate the therapeutic effect of octreotide acetate in preventing acute pancreatitis following ERCP. The study was carried out over 100 patients, randomly allocated in two groups. The first group of patients (50 pt.) received 0.1 mg of octreotide acetate s.c. 45 minutes before the ERCP, followed by another dose given 6 hours later. The second group received placebo s.c.


Subject(s)
Cholangiopancreatography, Endoscopic Retrograde/adverse effects , Octreotide/therapeutic use , Pancreatitis/prevention & control , Acute Disease , Adult , Aged , Aged, 80 and over , Female , Humans , Male , Middle Aged , Pancreatitis/etiology
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