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1.
Appl Environ Microbiol ; 89(11): e0074023, 2023 11 29.
Article in English | MEDLINE | ID: mdl-37843273

ABSTRACT

Recent years have seen a lot of interest in mycosporine-like amino acids (MAAs) because of their alleged potential as a natural microbial sunscreen. Since chemical ultraviolet (UV) absorbers are unsafe for long-term usage, the demand for natural UV-absorbing substances has increased. In this situation, MAA is a strong contender for an eco-friendly UV protector. The capacity of MAAs to absorb light in the UV-A (320-400 nm) and UV-B (280-320 nm) range without generating free radicals is potentially relevant in photoprotection. The usage of MAAs for purposes other than photoprotection has now shifted in favor of medicinal applications. Aside from UV absorption, MAAs also have anti-oxidant, anti-inflammatory, wound-healing, anti-photoaging, cell proliferation stimulators, anti-cancer agents, and anti-adipogenic properties. Recently, MAAs application to combat SARS-CoV-2 infection was also investigated. In this review article, we highlight the biomedical applications of MAAs that go beyond photoprotection, which can help in utilizing the MAAs as promising bioactive compounds in both pharmaceutical and cosmetic applications.


Subject(s)
Amino Acids , Ultraviolet Rays , Amino Acids/metabolism , Anti-Inflammatory Agents , Sunscreening Agents/pharmacology , Sunscreening Agents/chemistry , Sunscreening Agents/metabolism , Antioxidants
2.
Appl Microbiol Biotechnol ; 107(17): 5531-5544, 2023 Sep.
Article in English | MEDLINE | ID: mdl-37428189

ABSTRACT

The role of indigenous microbial communities in residual oil extraction following a recovery process is not well understood. This study investigated the dynamics of resident microbial communities in oil-field simulating sand pack bioreactors after the polymer flooding stage resumed with waterflooding and explored their contribution to the oil extraction process. The microbial community succession was studied through high-throughput sequencing of 16S rRNA genes. The results revealed alternating dominance of minority populations, including Dietzia sps., Acinetobacter sps., Soehngenia sps., and Paracoccus sps., in each bioreactor following the flooding process. Additionally, the post-polymer waterflooding stage led to higher oil recovery, with hydroxyethylcellulose, tragacanth gum, and partially hydrolyzed polyacrylamide polymer-treated bioreactors yielding additional recovery of 4.36%, 5.39%, and 3.90% residual oil in place, respectively. The dominant microbial communities were previously reported to synthesize biosurfactants and emulsifiers, as well as degrade and utilize hydrocarbons, indicating their role in aiding the recovery process. However, the correlation analysis of the most abundant taxa showed that some species were more positively correlated with the oil recovery process, while others acted as competitors for the carbon source. The study also found that higher biomass favored the plugging of high permeability zones in the reservoir, facilitating the dislodging of crude oil in new channels. In conclusion, this study suggests that microbial populations significantly shift upon polymer treatment and contribute synergistically to the oil recovery process depending on the characteristics of the polymers injected. KEY POINTS: • Post-polymer flooded microbial ecology shows unique indigenous microbial consortia. • Injected polymers are observed to act as enrichment substrates by resident communities. • The first study to show successive oil recovery stage post-polymer flood without external influence.

3.
Exp Parasitol ; 243: 108411, 2022 Dec.
Article in English | MEDLINE | ID: mdl-36342006

ABSTRACT

The target-based discovery of therapeutics against apicoplast, an all-important organelle is an overriding perspective. MEP pathway, an accredited drug target provides an insight into the importance of apicoplast in the survival of the parasite. In this study, we present the rational design strategy employing sustainable catalysis for the synthesis of benzodiazepine (BDZ) conformers followed by their biological evaluation as prospective inhibitors against the potential target of the IPP pathway, 1-deoxy-D-xylulose-5-phosphatereductoisomerase (DXR). The study reported the inhibitory profile of 8c and 6d against the quintessential step of the only drug target in the erythrocytic stages of parasite development. The potential compounds were identified to represent a novel class of inhibitors that serve as the lead molecules to impede the pathway and further affect the survival of the parasite.


Subject(s)
Antimalarials , Apicoplasts , Antimalarials/pharmacology , Benzodiazepines/pharmacology , Benzodiazepines/metabolism , Apicoplasts/metabolism , Erythrocytes , Plasmodium falciparum
4.
Appl Microbiol Biotechnol ; 105(21-22): 8073-8090, 2021 Nov.
Article in English | MEDLINE | ID: mdl-34609524

ABSTRACT

As the energy demand is escalating tremendously and crude oil being the primary energy source for at least the next two decades, the production of crude oil should be enhanced to meet the global energy needs. This can be achieved by either exploration of new oil fields for crude oil extraction or employing enhanced oil recovery (EOR) technology to recover the residual oil from existing marginal oil fields. The former method requires more capital investment and time; therefore, this review focuses on the latter. In general, the abandoned oil fields still have 50% of crude left which is unrecovered due to lack of technology. Hence, EOR came into existence after the conventional methods of recovery (primary and secondary recovery) were found to be inefficient and less economical. Nineteen percent of the EOR projects are based upon cEOR methods worldwide, of which more than 80% of projects use economically feasible polymer flooding process for oil recovery. Both synthetic and naturally derived polymers have been used widely for this purpose; however, many recent studies have shown the lower stability of synthetic polymers under extreme reservoir conditions of high salinity and temperature. Additionally, naturally derived polymers face microbial degradation as the major limitation. Therefore, a number of novel polymers are currently studied for their suitability as an efficient EOR polymer. Latest findings have also revealed that biopolymers play an important role in wettability alteration, pore evolution by bioplugging, and reducing fingering effect. Injection of biopolymers can also lead to the selective plugging of thief zones which redirects water flood to the inaccessible oil pores. Therefore, the current study focuses on such principle and mechanism of polymer flooding along with the reservoir and field characteristics which affects the polymer flooding. It also discusses the scope of biopolymer along with the screening criteria for use of novel polymers and strategies to overcome the problems during polymer flooding. KEY POINTS: • Discussion of macroscopic and microscopic mechanisms of polymer flooding. • Screening criteria of polymers prior to flooding are essential. • Biopolymers are eco-friendly and are applicable for a wide range of reservoir conditions.


Subject(s)
Petroleum , Polymers , Biopolymers , Oil and Gas Fields , Patient Selection
5.
Exp Cell Res ; 406(2): 112764, 2021 09 15.
Article in English | MEDLINE | ID: mdl-34358525

ABSTRACT

Protein kinases of both the parasite and the host are crucial in parasite invasion and survival and might act as drug targets against drug-resistant malaria. STK35L1 was among the top five hits in kinome-wide screening, suggesting its role in malaria's liver stage. However, the role of host STK35L1 in malaria remains elusive. In this study, we found that STK35L1 was highly upregulated during the infection of Plasmodium berghei (P. berghei) in HepG2 cells and mice liver, and knockdown of STK35L1 remarkably suppressed the sporozoites' infection in HepG2 cells. We showed that STAT3 is upregulated and phosphorylated during P. berghei sporozoites' infection, and STAT3 activation is required for both the upregulation of STK35L1 and STAT3. Furthermore, we found that ten cell cycle genes were upregulated in the sporozoite-infected hepatocytes. Knockdown of STK35L1 inhibited the basal expression of these genes except CDKN3 and GTSE1 in HepG2 cells. Thus, we identified STK35L1 as a host kinase that plays an obligatory role in malaria's liver stage and propose that it may serve as a potential drug target against drug-resistant malaria.


Subject(s)
Cell Cycle Proteins/metabolism , Liver/parasitology , Malaria/parasitology , Plasmodium berghei/physiology , Protein Serine-Threonine Kinases/metabolism , STAT3 Transcription Factor/metabolism , Sporozoites/physiology , Animals , Cell Cycle Proteins/genetics , Female , Gene Expression Regulation , Hep G2 Cells , Humans , Liver/metabolism , Malaria/metabolism , Mice , Mice, Inbred C57BL , Protein Serine-Threonine Kinases/genetics , STAT3 Transcription Factor/genetics
6.
Appl Microbiol Biotechnol ; 104(3): 1035-1053, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31863145

ABSTRACT

Various aspects of the oil fields in terms of microbial activity (souring, biocorrosion, etc.) and oil production (polymer flooding, etc.) have been evaluated through a variety of experiments. The primary step to study these properties in the laboratory requires the construction and operation of up-flow oil reservoir simulating bioreactors (ORSBs) in real time. Souring by reduction of sulfate to sulfide is a major contributor in enhancing corrosion of metal infrastructure used for oil production and processing. Whether the injection of biocides prevents or remediates reservoir souring can be addressed by flooding up-flow ORSBs. The potential of biopolymers/biosurfactants produced by different microbial strains have also been investigated for the role in maintaining additional oil recovery using ORSB. Additionally, key issues of polymer behavior during flooding of reservoirs could be understood during laboratory studies by monitoring the in situ porous medium rheology. Besides, the change in various ORSB parameters helps in adjudging the effect of different biosurfactants/biopolymers in enhancing oil recovery. Parameters such as permeability reduction, adsorption, interaction with porous matrix, and formation damage can be evaluated using ORSB. The analysis of earlier studies indicated that running bioreactors for longer duration of time can help in drawing conclusion with sharpness and less ambiguity. The current review discusses the construction and application of various types of ORSBs including the experimental studies employing ORSBs.


Subject(s)
Bacteria/metabolism , Bioreactors , Oil and Gas Fields , Petroleum/microbiology , Biopolymers
7.
J Phycol ; 55(3): 733-737, 2019 06.
Article in English | MEDLINE | ID: mdl-30802962

ABSTRACT

Cyanobacteria are ancient organisms surviving on the earth due to their simple nutritional requirements and ability to produce distinct secondary metabolites that can combat detrimental environmental impacts. In order to understand these abilities of cyanobacteria at the molecular level, it is necessary to extract high-quality genomic DNA. However, the presence of secondary metabolites and exopolysaccharides hinders the DNA extraction from these organisms, especially from hypersaline environments. Here we have developed and compared a new method with two known methods of DNA extraction from environmental isolates. The results clearly indicate that the new optimized method yielded large amount of DNA with high purity. Additionally, the extracted DNA showed reduced degradation and excellent overall quality, which can be used directly for downstream purposes such as PCR and sequencing.


Subject(s)
Cyanobacteria , DNA , Polymerase Chain Reaction
8.
Microorganisms ; 7(2)2019 Jan 26.
Article in English | MEDLINE | ID: mdl-30691094

ABSTRACT

Microorganisms thrive in extreme environments and are known for synthesizing valuable metabolites. Salt-loving microorganisms can flourish in saline environments which inhibit the growth of other microbial life, and they possess the potential to produce stable and novel biomolecules for the use in biotechnological applications, including anticancer compounds. Sambhar Lake is the largest inland soda lake in India and is an appropriate habitat for halophilic bacterial and archaeal strains in terms of diversity and potential production of bioactive compounds. In the present study, a moderately halo-alkaliphilic bacterial strain C12A1 was isolated from Sambhar Lake, located in Rajasthan, India. C12A1 was gram-positive, motile, rod-shaped, formed oval endospores, produced carotenoids, and exhibited optimal growth at 37 °C in 10⁻15% NaCl (pH 8). C12A1 was found to be able to hydrolyze skimmed milk, gelatin, and Tween 80 but unable to hydrolyze starch and carboxymethylcellulose. C12A1 showed 98.87% and 98.50% identity in 16S rRNA gene sequence to P. halophilus and P. salipiscarius, respectively. Nevertheless, C12A1 was clustered within the clade consisting of P. salipiscarius strains, but it showed a distinct lineage. Thus, C12A1 was designated as Piscibacillus sp. Cell proliferation assay results showed that C12A1 broth extract (BEP) decreased cell viability in breast cancer MDA-MB-231 cells, which was confirmed by the MTT (3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide) assay. Induction of cell toxicity was visualized by microscopy. Reverse Transcriptase PCR (RT-PCR) analysis demonstrated that BEP inhibited the expression of proliferative B-cell lymphoma-extra large (Bcl-xL) and cell cycle marker Cyclin-dependent kinase 2 (CDK2) at transcript levels. Similarly, cell migration and colony formation along with mesenchymal marker vimentin and stem cell marker BMI transcripts were found to be inhibited when cells were treated with the BEP. The anti-breast cancer potential of C12A1 indicates that microorganisms inhabiting saline-alkaline habitats, with Piscibacillus sp. in particular, are a promising source for discovery of novel bioactive substances.

9.
Ann Neurosci ; 26(3-4): 50-54, 2019 Jul.
Article in English | MEDLINE | ID: mdl-32843833

ABSTRACT

BACKGROUND: Epilepsy is a chronic medical condition that requires long-term therapy with antiepileptic drugs (AEDs). However, long-term employment of AEDs may lead to the onset of hyperhomocysteinemia, which has been found to modulate imperative metabolic mechanisms and induce cardiovascular disorders (CVDs). Therefore, adolescent population that have been diagnosed with epilepsy and utilize AEDs are among the most vulnerable, exhibiting higher risks of developing CVDs. PURPOSE: The present study was designed to explore the effects of folic acid (FA) supplementation on AED-induced hyperhomocysteinemia and CVD risk factors in adolescent epileptics. METHODS: The randomized clinical trial included adolescent epileptics (i.e., 10-19 years of age) of either sex, on antiepileptic therapy for > 6 months with high homocysteine levels (i.e., >10.9 µmol/L). At the time of enrolment, their baseline BP, lipid and homocysteine levels were recorded. Participants were randomly assigned to either treatment or placebo groups and received the respective treatments. At the end of the first month, BP, lipid and homocysteine levels were recorded and compared to determine the effect of FA on these parameters. RESULTS AND CONCLUSION: A significant fall in homocysteine levels was observed with FA supplementation (P < 0.05). However, this fall was significantly high in valproic acid treated epileptic patients. In addition, we observed an improvement in high-density lipoprotein levels, a risk factor for CVDs, but the change was statistically insignificant (P > 0.05). The study results suggest that FA supplementation in epileptic patients receiving AED therapy may minimize AED-induced hyperhomocysteinemia and other CVD risk factors.

10.
Appl Microbiol Biotechnol ; 101(11): 4387-4402, 2017 Jun.
Article in English | MEDLINE | ID: mdl-28502065

ABSTRACT

With a rising population, the demand for energy has increased over the years. As per the projections, both fossil fuel and renewables will remain as major energy source (678 quadrillion BTU) till 2030 with fossil fuel contributing 78% of total energy consumption. Hence, attempts are continuously made to make fossil fuel production more sustainable and cheaper. From the past 40 years, polymer flooding has been carried out in marginal oil fields and have proved to be successful in many cases. The common expectation from polymer flooding is to obtain 50% ultimate recovery with 15 to 20% incremental recovery over secondary water flooding. Both naturally derived polymers like xanthan gum and synthetic polymers like partially hydrolyzed polyacrylamide (HPAM) have been used for this purpose. Earlier laboratory and field trials revealed that salinity and temperature are the major issues with the synthetic polymers that lead to polymer degradation and adsorption on the rock surface. Microbial degradation and concentration are major issues with naturally derived polymers leading to loss of viscosity and pore throat plugging. Earlier studies also revealed that polymer flooding is successful in the fields where oil viscosity is quite higher (up to 126 cp) than injection water due to improvement in mobility ratio during polymer flooding. The largest successful polymer flood was reported in China in 1990 where both synthetic and naturally derived polymers were used in nearly 20 projects. The implementation of these projects provides valuable suggestions for further improving the available processes in future. This paper examines the selection criteria of polymer, field characteristics that support polymer floods and recommendation to design a large producing polymer flooding.


Subject(s)
Oil and Gas Fields , Petroleum , Polymers , Acrylic Resins , Biopolymers , China , Hydrolysis , Microbial Consortia , Polysaccharides, Bacterial , Surface-Active Agents , Viscosity , Water
11.
J Basic Microbiol ; 57(9): 715-727, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28543536

ABSTRACT

Mycosporine-like amino acids are the most common group of transparent ultraviolet radiation absorbing intracellular secondary metabolites. These molecules absorb light in the range of ultraviolet-A and -B with a maximum absorbance between 310 and 362 nm. Cyanobacteria might have faced the most deleterious ultraviolet radiation, which leads to an evolution of ultraviolet protecting mycosporine-like amino acids for efficient selection in the environment. In the last 30 years, scientists have investigated various cyanobacteria for novel mycosporine-like amino acids, applying different induction techniques. This review organizes all the cyanobacterial groups that produce various mycosporine-like amino acids. We found out that cyanobacteria belonging to orders Synechococcales, Chroococcales, Oscillatoriales, and Nostocales are frequently studied for the presence of mycosporine-like amino acids, while orders Gloeobacterales, Spirulinales, Pleurocapsales, and Chroococcidiopsidales are still need to be investigated. Nostoc and Anabaena strains are major studied genus for the mycosporine-like amino acids production. Hence, this review will give further insight to the readers about potential mycosporine-like amino acid producing cyanobacterial groups in future investigations.


Subject(s)
Amino Acids/biosynthesis , Cyanobacteria/metabolism , Glycine/biosynthesis , Amino Acids/analysis , Amino Acids/chemistry , Amino Acids/metabolism , Anabaena/metabolism , Cyanobacteria/chemistry , Cyanobacteria/radiation effects , Glycine/analysis , Glycine/chemistry , Ultraviolet Rays
12.
Appl Microbiol Biotechnol ; 98(18): 8017-29, 2014 Sep.
Article in English | MEDLINE | ID: mdl-24903813

ABSTRACT

Produced waters from the Barrancas and Chihuido de la Salina (CHLS) fields in Argentina had higher concentrations of sulfate than were found in the injection waters, suggesting that the formation waters in these reservoirs had a high sulfate concentration and that sulfate-reducing bacteria were inactive downhole. Incubation of produced waters with produced oil gave rapid reduction of sulfate to sulfide (souring) at 37 °C, some at 60 °C, but none at 80 °C. Alkylbenzenes and alkanes served as electron donor, especially in incubations with CHLS oil. Dilution with water to decrease the ionic strength or addition of inorganic phosphate did not increase souring at 37 or 60 °C. These results indicate that souring in these reservoirs is limited by the reservoir temperature (80 °C for the Barrancas and 65-70 °C for the CHLS field) and that souring may accelerate in surface facilities where the oil-water mixture cools. As a result, significant sulfide concentrations are present in these surface facilities. The activity and presence of chemolithotrophic Gammaproteobacteria of the genus Thiomicrospira, which represented 85% of the microbial community in a water plant in the Barrancas field, indicated reoxidation of sulfide and sulfur to sulfate. The presence of these bacteria offers potential for souring control by microbial oxidation in aboveground facilities, provided that formation of corrosive sulfur can be avoided.


Subject(s)
Oil and Gas Fields/microbiology , Temperature , Argentina , Bacteria/isolation & purification , Bacteria/metabolism , Sulfates/metabolism , Sulfides/metabolism
13.
Contemp Clin Dent ; 4(3): 371-3, 2013 Jul.
Article in English | MEDLINE | ID: mdl-24124308

ABSTRACT

Canine impaction is a dental problem very often encountered in orthodontic practice. After the third molar, the canine is the most frequently impacted tooth. Bringing the impacted canine into a normal position is important for functional occlusion and the final esthetics of the orthodontic treatment. This article illustrates a peculiar case, in which all four permanent canines maintained their unerupted status at age of 16 years. All four impacted canines were surgically exposed, attachment bonded, traction given with K-9 spring and ideally positioned with fixed orthodontic mechanotherapy.

14.
Environ Sci Technol ; 47(18): 10708-17, 2013 Sep 17.
Article in English | MEDLINE | ID: mdl-23889694

ABSTRACT

Oil in subsurface reservoirs is biodegraded by resident microbial communities. Water-mediated, anaerobic conversion of hydrocarbons to methane and CO2, catalyzed by syntrophic bacteria and methanogenic archaea, is thought to be one of the dominant processes. We compared 160 microbial community compositions in ten hydrocarbon resource environments (HREs) and sequenced twelve metagenomes to characterize their metabolic potential. Although anaerobic communities were common, cores from oil sands and coal beds had unexpectedly high proportions of aerobic hydrocarbon-degrading bacteria. Likewise, most metagenomes had high proportions of genes for enzymes involved in aerobic hydrocarbon metabolism. Hence, although HREs may have been strictly anaerobic and typically methanogenic for much of their history, this may not hold today for coal beds and for the Alberta oil sands, one of the largest remaining oil reservoirs in the world. This finding may influence strategies to recover energy or chemicals from these HREs by in situ microbial processes.


Subject(s)
Archaea/genetics , Bacteria/genetics , Oil and Gas Fields/microbiology , RNA, Archaeal/genetics , Aerobiosis , Alberta , Archaea/classification , Archaea/metabolism , Bacteria/classification , Bacteria/metabolism , Genes, Archaeal , Genes, Bacterial , Hydrocarbons/metabolism , Metagenomics , RNA, Archaeal/metabolism , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics
15.
Appl Environ Microbiol ; 79(16): 5059-68, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23770914

ABSTRACT

Oil production by water injection can cause souring in which sulfate in the injection water is reduced to sulfide by resident sulfate-reducing bacteria (SRB). Sulfate (2 mM) in medium injected at a rate of 1 pore volume per day into upflow bioreactors containing residual heavy oil from the Medicine Hat Glauconitic C field was nearly completely reduced to sulfide, and this was associated with the generation of 3 to 4 mM acetate. Inclusion of 4 mM nitrate inhibited souring for 60 days, after which complete sulfate reduction and associated acetate production were once again observed. Sulfate reduction was permanently inhibited when 100 mM nitrate was injected by the nitrite formed under these conditions. Pulsed injection of 4 or 100 mM nitrate inhibited sulfate reduction temporarily. Sulfate reduction resumed once nitrate injection was stopped and was associated with the production of acetate in all cases. The stoichiometry of acetate formation (3 to 4 mM formed per 2 mM sulfate reduced) is consistent with a mechanism in which oil alkanes and water are metabolized to acetate and hydrogen by fermentative and syntrophic bacteria (K. Zengler et al., Nature 401:266-269, 1999), with the hydrogen being used by SRB to reduce sulfate to sulfide. In support of this model, microbial community analyses by pyrosequencing indicated SRB of the genus Desulfovibrio, which use hydrogen but not acetate as an electron donor for sulfate reduction, to be a major community component. The model explains the high concentrations of acetate that are sometimes found in waters produced from water-injected oil fields.


Subject(s)
Bacteria/metabolism , Bioreactors/microbiology , Nitrates/metabolism , Petroleum/metabolism , Sulfides/metabolism , Acetates/metabolism , Oxidation-Reduction , Sulfates/metabolism
16.
Front Microbiol ; 4: 140, 2013.
Article in English | MEDLINE | ID: mdl-23761789

ABSTRACT

Alkanes comprise a substantial fraction of crude oil and refined fuels. As such, they are prevalent within deep subsurface fossil fuel deposits and in shallow subsurface environments such as aquifers that are contaminated with hydrocarbons. These environments are typically anaerobic, and host diverse microbial communities that can potentially use alkanes as substrates. Anaerobic alkane biodegradation has been reported to occur under nitrate-reducing, sulfate-reducing, and methanogenic conditions. Elucidating the pathways of anaerobic alkane metabolism has been of interest in order to understand how microbes can be used to remediate contaminated sites. Alkane activation primarily occurs by addition to fumarate, yielding alkylsuccinates, unique anaerobic metabolites that can be used to indicate in situ anaerobic alkane metabolism. These metabolites have been detected in hydrocarbon-contaminated shallow aquifers, offering strong evidence for intrinsic anaerobic bioremediation. Recently, studies have also revealed that alkylsuccinates are present in oil and coal seam production waters, indicating that anaerobic microbial communities can utilize alkanes in these deeper subsurface environments. In many crude oil reservoirs, the in situ anaerobic metabolism of hydrocarbons such as alkanes may be contributing to modern-day detrimental effects such as oilfield souring, or may lead to more beneficial technologies such as enhanced energy recovery from mature oilfields. In this review, we briefly describe the key metabolic pathways for anaerobic alkane (including n-alkanes, isoalkanes, and cyclic alkanes) metabolism and highlight several field reports wherein alkylsuccinates have provided evidence for anaerobic in situ alkane metabolism in shallow and deep subsurface environments.

17.
Environ Sci Technol ; 46(2): 1285-92, 2012 Jan 17.
Article in English | MEDLINE | ID: mdl-22148580

ABSTRACT

Souring in the Medicine Hat Glauconitic C field, which has a low bottom-hole temperature (30 °C), results from the presence of 0.8 mM sulfate in the injection water. Inclusion of 2 mM nitrate to decrease souring results in zones of nitrate-reduction, sulfate-reduction, and methanogenesis along the injection water flow path. Microbial community analysis by pyrosequencing indicated dominant community members in each of these zones. Nitrate breakthrough was observed in 2-PW, a major water- and sulfide-producing well, after 4 years of injection. Sulfide concentrations at four other production wells (PWs) also reached zero, causing the average sulfide concentration in 14 PWs to decrease significantly. Interestingly, oil produced by 2-PW was depleted of toluene, the preferred electron donor for nitrate reduction. 2-PW and other PWs with zero sulfide produced 95% water and 5% oil. At 2 mM nitrate and 5 mM toluene, respectively, this represents an excess of electron acceptor over electron donor. Hence, continuous nitrate injection can change the composition of produced oil and nitrate breakthrough is expected first in PWs with a low oil to water ratio, because oil from these wells is treated on average with more nitrate than is oil from PWs with a high oil to water ratio.


Subject(s)
Bacteria/metabolism , Extraction and Processing Industry/methods , Nitrates/chemistry , Petroleum/analysis , Toluene/chemistry , Sulfates , Sulfides , Time Factors
18.
Appl Microbiol Biotechnol ; 91(3): 799-810, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21538114

ABSTRACT

Injection of up-flow packed-bed bioreactors with excess volatile fatty acids and limiting concentrations of nitrate and sulfate gave complete reduction of nitrate from 0 to 5.5 cm and complete or near-complete reduction of sulfate from 3.2 to 11.5 cm along the bioreactor flow path. Most of the biomass (85%) and most of the genes for nitrate reduction (narG, 96%; napA, 99%) and for sulfate reduction (dsrB, 91%) were present near the inlet (0-5.5 cm) of the 37-cm-long bioreactor. Microbial community analysis by a combination of denaturing gradient gel electrophoresis and pyrosequencing of 16S rRNA amplicons indicated that nitrate-reducing Arcobacter and Pseudomonas species were located from 0 to 3.2 cm and throughout, respectively. Desulfobulbus species were the main sulfate reducers present and acetotrophic methanogens of the genus Methanosaeta predominated at 20-37 cm. Overall, the results indicated a succession of microbial communities along the bioreactor flow path. In the absence of nitrate, the sulfate reduction zone moved nearer to the bioreactor inlet. The sulfide concentration in the bioreactor effluent was temporarily lowered after nitrate injection was re-started. Hence, the bioreactor sulfide output could be disrupted by pulsed, not by constant nitrate injection, as demonstrated also previously in a low-temperature oil field.


Subject(s)
Bioreactors/microbiology , Microbial Consortia/genetics , Nitrates/metabolism , Sulfides/metabolism , Bacteria/classification , Bacteria/genetics , Biodegradation, Environmental , Biofilms , Biomass , Oils , Polymerase Chain Reaction , RNA, Ribosomal, 16S/genetics , Sulfur-Reducing Bacteria/genetics
19.
Anaerobe ; 16(1): 12-8, 2010 Feb.
Article in English | MEDLINE | ID: mdl-19427389

ABSTRACT

Sulfidogenic communities in the production waters of onshore oil fields in north-eastern India were examined using a culturing approach. Production water samples were inoculated into medium selective for Sulfate reducing bacteria (SRB) and Thiosulfate Reducing Bacteria (TRB). The total number of viable sulfidogenic microorganisms in the samples obtained from the two production water tanks was approximately 10(5) MPN ml(-1) (most probable number per ml). Most of the isolates were thermo-tolerant and could be grown between 40 and 45 degrees C. Hydrogen sulfide production by TRB was significantly higher than by SRB. Based on 16S rRNA gene sequencing, the isolates were grouped in nine different phylotypes. Phylogenetic analysis indicated that most of the SRB were affiliated with the phylum Proteobacteria, encompassing Gram-negative bacteria, belonging to the genera Desulfovibrio, Desulfomicrobium, and Desulfobulbus. However, five isolates grouped with the genus Desulfotomaculum were found to be gram-positive SRB. Most of the thiosulfate reducing isolates was affiliated with the phylum Firmicutes, including Clostridium and Fusibacter and also with the phylum Proteobacteria, including the genera Enterobacter and Citrobacter. Phylotypes related to Clostridium (69%) and Desulfovibrio (53%) dominated the community in the production water samples. This study demonstrates the diversity of the TRB and SRB that play a critical role in the souring mediated corrosion of the oil-water separation tanks in the north-eastern India oil fields.


Subject(s)
Bacteria, Anaerobic/classification , Bacteria, Anaerobic/isolation & purification , Biodiversity , Petroleum/microbiology , Sulfides/metabolism , Water Microbiology , Bacteria, Anaerobic/metabolism , Cluster Analysis , Colony Count, Microbial , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Hot Temperature , India , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
20.
FEMS Microbiol Ecol ; 69(2): 301-12, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19527290

ABSTRACT

Sulfate-reducing bacteria (SRB) pose a serious problem to offshore oil industries by producing sulfide, which is highly reactive, corrosive and toxic. The dissimilatory sulfite reductase (dsr) gene encodes for enzyme dissimilatory sulfite reductase and catalyzes the conversion of sulfite to sulfide. Because this gene is required by all sulfate reducers, it is a potential candidate as a functional marker. Denaturing gradient gel electrophoresis fingerprints revealed the presence of considerable genetic diversity in the DNA extracts achieved from production water collected from various oil fields. A quantitative PCR (qPCR) assay was developed for rapid and accurate detection of dsrB in oil field samples. A standard curve was prepared based on a plasmid containing the appropriate dsrB fragment from Desulfomicrobium norvegicum. The quantification range of this assay was six orders of magnitude, from 4.5 x 10(7) to 4.5 x 10(2) copies per reaction. The assay was not influenced by the presence of foreign DNA. This assay was tested against several DNA samples isolated from formation water samples collected from geographically diverse locations of India. The results indicate that this qPCR approach can provide valuable information related to the abundance of the bisulfite reductase gene in harsh environmental samples.


Subject(s)
Deltaproteobacteria/genetics , Fuel Oils/microbiology , Hydrogensulfite Reductase/genetics , Polymerase Chain Reaction/methods , Sulfur-Reducing Bacteria/genetics , Bacterial Proteins/genetics , DNA, Bacterial/genetics , Deltaproteobacteria/enzymology , Genes, Bacterial , Geologic Sediments/microbiology , Sensitivity and Specificity , Sequence Analysis, DNA , Sulfur-Reducing Bacteria/enzymology
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