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1.
J Health Care Poor Underserved ; 34(3): 1121-1128, 2023.
Article in English | MEDLINE | ID: mdl-38015140

ABSTRACT

Racism named as a public health issue largely focuses on those at the care-receiving end of health care. Home health care workers (HHCWs) are predominantly Black, immigrant, and women; in New York state it is illegal for HHCWs to work 24 consecutive hours, but homecare agencies assign HHCWs to 24-hour shifts and only pay for 13 hours of work. The demanding work of HHCWs increases their risk for and experiences of injury, depression, cardiovascular disease, and cerebrovascular events. This manifestation of exploitation illustrates that racism affects health care workers as well as the public.


Subject(s)
Racism , Systemic Racism , Female , Humans , New York , Health Personnel , Delivery of Health Care
2.
Breast Cancer Res Treat ; 201(2): 307-316, 2023 Sep.
Article in English | MEDLINE | ID: mdl-37418031

ABSTRACT

PURPOSE: In a phase II trial in patients with metastatic triple-negative breast cancer (mTNBC; NCT02978716), administering trilaciclib prior to gemcitabine plus carboplatin (GCb) enhanced T-cell activation and improved overall survival versus GCb alone. The survival benefit was more pronounced in patients with higher immune-related gene expression. We assessed immune cell subsets and used molecular profiling to further elucidate effects on antitumor immunity. METHODS: Patients with mTNBC and ≤ 2 prior chemotherapy regimens for locally recurrent TNBC or mTNBC were randomized 1:1:1 to GCb on days 1 and 8, trilaciclib prior to GCb on days 1 and 8, or trilaciclib alone on days 1 and 8, and prior to GCb on days 2 and 9. Gene expression, immune cell populations, and Tumor Inflammation Signature (TIS) scores were assessed in baseline tumor samples, with flow cytometric analysis and intracellular and surface cytokine staining used to assess immune cell populations and function. RESULTS: After two cycles, the trilaciclib plus GCb group (n = 68) had fewer total T cells and significantly fewer CD8+ T cells and myeloid-derived suppressor cells compared with baseline, with enhanced T-cell effector function versus GCb alone. No significant differences were observed in patients who received GCb alone (n = 34). Of 58 patients in the trilaciclib plus GCb group with antitumor response data, 27 had an objective response. RNA sequencing revealed a trend toward higher baseline TIS scores among responders versus non­responders. CONCLUSION: The results suggest that administering trilaciclib prior to GCb may modulate the composition and response of immune cell subsets to TNBC.


Subject(s)
Triple Negative Breast Neoplasms , Humans , Carboplatin , Triple Negative Breast Neoplasms/pathology , Pyrimidines , Pyrroles/therapeutic use , Antineoplastic Combined Chemotherapy Protocols/adverse effects
3.
Nat Biotechnol ; 40(8): 1250-1258, 2022 08.
Article in English | MEDLINE | ID: mdl-35332339

ABSTRACT

Despite their clinical success, chimeric antigen receptor (CAR)-T cell therapies for B cell malignancies are limited by lengthy, costly and labor-intensive ex vivo manufacturing procedures that might lead to cell products with heterogeneous composition. Here we describe an implantable Multifunctional Alginate Scaffold for T Cell Engineering and Release (MASTER) that streamlines in vivo CAR-T cell manufacturing and reduces processing time to a single day. When seeded with human peripheral blood mononuclear cells and CD19-encoding retroviral particles, MASTER provides the appropriate interface for viral vector-mediated gene transfer and, after subcutaneous implantation, mediates the release of functional CAR-T cells in mice. We further demonstrate that in vivo-generated CAR-T cells enter the bloodstream and control distal tumor growth in a mouse xenograft model of lymphoma, showing greater persistence than conventional CAR-T cells. MASTER promises to transform CAR-T cell therapy by fast-tracking manufacture and potentially reducing the complexity and resources needed for provision of this type of therapy.


Subject(s)
Antigens, CD19 , Leukocytes, Mononuclear , Animals , B-Lymphocytes , Humans , Immunotherapy, Adoptive/methods , Leukocytes, Mononuclear/metabolism , Mice , Receptors, Antigen, T-Cell , T-Lymphocytes
4.
Clin Cancer Res ; 27(21): 5951-5960, 2021 11 01.
Article in English | MEDLINE | ID: mdl-33858858

ABSTRACT

PURPOSE: CD19-redirected chimeric antigen receptor (CAR.CD19) T cells promote clinical responses in patients with relapsed/refractory B-cell non-Hodgkin lymphomas and chronic lymphocytic leukemia (CLL). However, patients showing sustained clinical responses after CAR.CD19-T treatment show increased infection risk due to compromised B-lymphocyte recovery. Mature B cell-derived malignancies express monoclonal immunoglobulins bearing either κ- or λ-light chains. We initially constructed CAR-T targeting the κ-light-chain (CAR.κ) and established a clinical study with it. After optimizing the CAR molecule, cells developed CAR-T targeting the λ-light chain (CAR.λ) and we explored their antitumor activity. EXPERIMENTAL DESIGN: Using Igλ+ lymphoma cell lines and patient-derived Igλ+ CLL cells, we evaluated the in vitro tumor cytotoxicity and cytokine profiles of CAR.λ. We also assessed the in vivo efficacy of CAR.λ in xenograft Igλ+ lymphoma models including a patient-derived xenograft (PDX) of mantle cell lymphoma, and the effects of λ- or κ-light chain-specific CAR-T on normal B lymphocytes in a humanized murine model. RESULTS: CAR.λ demonstrated antitumor effects against Igλ+ lymphoma cells and patient-derived CLL cells in vitro, and in vivo in xenograft and PDX Igλ+ lymphoma murine models. Antitumor activity of CAR.λ was superimposable to CAR.CD19. Furthermore, we demonstrated in the humanized murine model that λ- or κ-light chain-specific CAR-T cells only depleted the corresponding targeted light chain-expressing normal B cells, while sparing the reciprocal light chain carrying B cells. CONCLUSIONS: Adoptive transfer of CAR.λ and CAR.κ-T cells represents a useful and alternative modality to CAR.CD19-T cells in treating mature B-cell malignancies with minimal impact on humoral immunity.See related commentary by Jain and Locke, p. 5736.


Subject(s)
B-Lymphocytes/immunology , Immunoglobulin Light Chains/immunology , Immunotherapy , Lymphoma/immunology , Lymphoma/therapy , Receptors, Chimeric Antigen/immunology , T-Lymphocytes/immunology , Animals , Humans , Mice
5.
Nat Biomed Eng ; 5(9): 1038-1047, 2021 09.
Article in English | MEDLINE | ID: mdl-33903744

ABSTRACT

The immunosuppressive microenvironment of solid tumours reduces the antitumour activity of chimeric antigen receptor T cells (CAR-T cells). Here, we show that the release-through the implantation of a hyaluronic acid hydrogel-of CAR-T cells targeting the human chondroitin sulfate proteoglycan 4, polymer nanoparticles encapsulating the cytokine interleukin-15 and platelets conjugated with the checkpoint inhibitor programmed death-ligand 1 into the tumour cavity of mice with a resected subcutaneous melanoma tumour inhibits the local recurrence of the tumour as well as the growth of distant tumours, through the abscopal effect. The hydrogel, which functions as a reservoir, facilitates the enhanced distribution of the CAR-T cells within the surgical bed, and the inflammatory microenvironment triggers platelet activation and the subsequent release of platelet-derived microparticles. The post-surgery local delivery of combination immunotherapy through a biocompatible hydrogel reservoir could represent a translational route for preventing the recurrence of cancers with resectable tumours.


Subject(s)
Cell-Derived Microparticles , Immunotherapy, Adoptive , Animals , Antibodies, Monoclonal, Humanized , Blood Platelets , Hydrogels , Mice , Neoplasm Recurrence, Local/prevention & control , T-Lymphocytes , Tumor Microenvironment
6.
Clin Cancer Res ; 27(11): 3141-3153, 2021 06 01.
Article in English | MEDLINE | ID: mdl-33531429

ABSTRACT

PURPOSE: The development of safe and effective chimeric antigen receptor (CAR) T-cell therapy for acute myeloid leukemia (AML) has largely been limited by the concomitant expression of most AML-associated surface antigens on normal myeloid progenitors and by the potential prolonged disruption of normal hematopoiesis by the immunotargeting of these antigens. The purpose of this study was to evaluate B7-homolog 3 (B7-H3) as a potential target for AML-directed CAR T-cell therapy. B7-H3, a coreceptor belonging to the B7 family of immune checkpoint molecules, is overexpressed on the leukemic blasts of a significant subset of patients with AML and may overcome these limitations as a potential target antigen for AML-directed CAR-T therapy. EXPERIMENTAL DESIGN: B7-H3 expression was evaluated on AML cell lines, primary AML blasts, and normal bone marrow progenitor populations. The antileukemia efficacy of B7-H3-specific CAR-T cells (B7-H3.CAR-T) was evaluated using in vitro coculture models and xenograft models of disseminated AML, including patient-derived xenograft models. The potential hematopoietic toxicity of B7-H3.CAR-Ts was evaluated in vitro using colony formation assays and in vivo in a humanized mouse model. RESULTS: B7-H3 is expressed on monocytic AML cell lines and on primary AML blasts from patients with monocytic AML, but is not significantly expressed on normal bone marrow progenitor populations. B7-H3.CAR-Ts exhibit efficient antigen-dependent cytotoxicity in vitro and in xenograft models of AML, and are unlikely to cause unacceptable hematopoietic toxicity. CONCLUSIONS: B7-H3 is a promising target for AML-directed CAR-T therapy. B7-H3.CAR-Ts control AML and have a favorable safety profile in preclinical models.


Subject(s)
B7 Antigens/metabolism , Immunotherapy, Adoptive/methods , Leukemia, Myeloid, Acute/therapy , Molecular Targeted Therapy/methods , Receptors, Chimeric Antigen , Animals , B7 Antigens/genetics , Cell Line, Tumor , Cytotoxicity, Immunologic , Disease Models, Animal , Gene Expression , Leukemia, Myeloid, Acute/genetics , Leukemia, Myeloid, Acute/metabolism , Mice , Xenograft Model Antitumor Assays
7.
PLoS One ; 15(9): e0238819, 2020.
Article in English | MEDLINE | ID: mdl-32976541

ABSTRACT

Adoptive cell transfer of Chimeric Antigen Receptor (CAR)-T cells showed promising results in patients with B cell malignancies. However, the detailed mechanism of CAR-T cell interaction with the target tumor cells is still not well understood. This work provides a systematic method for analyzing the activation and degranulation of second-generation CAR-T cells utilizing antigen-presenting cell surfaces. Antigen-presenting cell surfaces composed of circular micropatterns of CAR-specific anti-idiotype antibodies have been developed to mimic the interaction of CAR-T cells with target tumor cells using micro-contact printing. The levels of activation and degranulation of fixed non-transduced T cells (NT), CD19.CAR-T cells, and GD2.CAR-T cells on the antigen-presenting cell surfaces were quantified and compared by measuring the intensity of the CD3ζ chain phosphorylation and the Lysosome-Associated Membrane Protein 1 (LAMP-1), respectively. The size and morphology of the cells were also measured. The intracellular Ca2+ flux of NT and CAR-T cells upon engagement with the antigen-presenting cell surface was reported. Results suggest that NT and CD19.CAR-T cells have comparable activation levels, while NT have higher degranulation levels than CD19.CAR-T cells and GD2.CAR-T cells. The findings show that antigen-presenting cell surfaces allow a quantitative analysis of the molecules involved in synapse formation in different CAR-T cells in a systematic, reproducible manner.


Subject(s)
Antigens, Surface/metabolism , Lymphoma, B-Cell/immunology , Receptors, Antigen, T-Cell/metabolism , Receptors, Chimeric Antigen/metabolism , Adoptive Transfer/methods , Antigen-Presenting Cells/immunology , Antigens, CD19/metabolism , B-Lymphocytes/immunology , Cell Line, Tumor , Humans , Immunotherapy, Adoptive/methods , Lymphoma, B-Cell/therapy , T-Lymphocytes/immunology
8.
Adv Healthc Mater ; 9(14): e2000275, 2020 07.
Article in English | MEDLINE | ID: mdl-32592454

ABSTRACT

Chimeric antigen receptor T (CAR-T) cell therapy has produced impressive clinical responses in patients with B-cell malignancies. Critical to the success of CAR-T cell therapies is the achievement of robust gene transfer into T cells mediated by viral vectors such as gamma-retroviral vectors. However, current methodologies of retroviral gene transfer rely on spinoculation and the use of retronectin, which may limit the implementation of cost-effective CAR-T cell therapies. Herein, a low-cost, tunable, macroporous, alginate scaffold that transduces T cells with retroviral vectors under static condition is described. CAR-T cells produced by macroporous scaffold-mediated viral transduction exhibit >60% CAR expression, retain effector phenotype, expand to clinically relevant cell numbers, and eradicate CD19+ lymphoma in vivo. Efficient transduction is dependent on scaffold macroporosity. Taken together, the data show that macroporous alginate scaffolds serve as an attractive alternative to current transduction protocols and have high potential for clinical translation to genetically modify T cells for adoptive cellular therapy.


Subject(s)
Receptors, Chimeric Antigen , T-Lymphocytes , Antigens, CD19 , Cell- and Tissue-Based Therapy , Humans , Immunotherapy, Adoptive , Receptors, Chimeric Antigen/genetics
9.
Cancer Cell ; 37(2): 216-225.e6, 2020 02 10.
Article in English | MEDLINE | ID: mdl-32004441

ABSTRACT

Chimeric antigen receptor (CAR) T cell costimulation mediated by CD28 and 4-1BB is essential for CAR-T cell-induced tumor regression. However, CD28 and 4-1BB differentially modulate kinetics, metabolism and persistence of CAR-T cells, and the mechanisms governing these differences are not fully understood. We found that LCK recruited into the synapse of CD28-encoding CAR by co-receptors causes antigen-independent CAR-CD3ζ phosphorylation and increased antigen-dependent T cell activation. In contrast, the synapse formed by 4-1BB-encoding CAR recruits the THEMIS-SHP1 phosphatase complex that attenuates CAR-CD3ζ phosphorylation. We further demonstrated that the CAR synapse can be engineered to recruit either LCK to enhance the kinetics of tumor killing of 4-1BB CAR-T cells or SHP1 to tune down cytokine release of CD28 CAR-T cells.


Subject(s)
Intercellular Signaling Peptides and Proteins/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Protein Tyrosine Phosphatase, Non-Receptor Type 6/metabolism , Receptors, Chimeric Antigen/metabolism , Animals , CD28 Antigens/immunology , Cell Line, Tumor , Cytokines/metabolism , Humans , Lymphocyte Activation/immunology , Mice, Transgenic , Receptors, Antigen, T-Cell/immunology , T-Lymphocytes/immunology , Tumor Necrosis Factor Receptor Superfamily, Member 9/metabolism
10.
Nat Biotechnol ; 38(4): 448-459, 2020 04.
Article in English | MEDLINE | ID: mdl-32015548

ABSTRACT

Cytokines that stimulate T cell proliferation, such as interleukin (IL)-15, have been explored as a means of boosting the antitumor activity of chimeric antigen receptor (CAR) T cells. However, constitutive cytokine signaling in T cells and activation of bystander cells may cause toxicity. IL-23 is a two-subunit cytokine known to promote proliferation of memory T cells and T helper type 17 cells. We found that, upon T cell antigen receptor (TCR) stimulation, T cells upregulated the IL-23 receptor and the IL-23α p19 subunit, but not the p40 subunit. We engineered expression of the p40 subunit in T cells (p40-Td cells) and obtained selective proliferative activity in activated T cells via autocrine IL-23 signaling. In comparison to CAR T cells, p40-Td CAR T cells showed improved antitumor capacity in vitro, with increased granzyme B and decreased PD-1 expression. In two xenograft and two syngeneic solid tumor mouse models, p40-Td CAR T cells showed superior efficacy in comparison to CAR T cells and attenuated side effects in comparison to CAR T cells expressing IL-18 or IL-15.


Subject(s)
Immunotherapy, Adoptive/methods , Interleukin-23/metabolism , Neoplasms/therapy , T-Lymphocytes/immunology , Animals , Cell Hypoxia/genetics , Cell Line, Tumor , Cell Proliferation , Humans , Interleukin-12 Subunit p40/genetics , Interleukin-12 Subunit p40/metabolism , Interleukin-23/genetics , Lymphocyte Activation , Mice , Neoplasms/immunology , Receptors, Antigen, T-Cell/genetics , Receptors, Antigen, T-Cell/metabolism , Receptors, Chimeric Antigen/genetics , Receptors, Chimeric Antigen/metabolism , Receptors, Interleukin/genetics , Receptors, Interleukin/metabolism , STAT3 Transcription Factor/metabolism , Signal Transduction/genetics , T-Lymphocytes/metabolism , Xenograft Model Antitumor Assays
11.
Trends Ecol Evol ; 35(5): 384-396, 2020 05.
Article in English | MEDLINE | ID: mdl-32007296

ABSTRACT

Observational and experimental studies have shown that an interaction class between two species (be it mutualistic, competitive, antagonistic, or neutral) may switch to a different class, depending on the biotic and abiotic factors within which species are observed. This complexity arising from the evidence of context-dependencies has underscored a difficulty in establishing a systematic analysis about the extent to which species interactions are expected to switch in nature and experiments. Here, we propose an overarching theoretical framework, by integrating probabilistic and structural approaches, to establish null expectations about switches of interaction classes across environmental contexts. This integration provides a systematic platform upon which it is possible to establish new hypotheses, clear predictions, and quantifiable expectations about the context-dependency of species interactions.


Subject(s)
Ecosystem , Symbiosis
12.
Nat Cancer ; 1(10): 990-997, 2020 10.
Article in English | MEDLINE | ID: mdl-33898999

ABSTRACT

Retinoblastoma (RB) is a pediatric retinal tumor that overexpresses the ganglioside GD2. Although it is treatable in patients with early diagnosis, patients may lose one or two eyes. We generated GD2-specific chimeric antigen receptor T lymphocytes (GD2.CAR-Ts) and locally delivered them to mice with an in-situ grafting RB. When used in combination with the local release of interleukin (IL)-15 and an injectable hydrogel, we showed that GD2.CAR-Ts successfully eliminate RB tumor cells without impairment of the mouse vision.


Subject(s)
Retinal Neoplasms , Retinoblastoma , Animals , Gangliosides , Humans , Hydrogels , Mice , Retinal Neoplasms/therapy , Retinoblastoma/therapy , T-Lymphocytes
13.
Cancer Immunol Res ; 7(5): 773-783, 2019 05.
Article in English | MEDLINE | ID: mdl-30842091

ABSTRACT

Tumors are inherently heterogeneous in antigen expression, and escape from immune surveillance due to antigen loss remains one of the limitations of targeted immunotherapy. Despite the clinical use of adoptive therapy with chimeric antigen receptor (CAR)-redirected T cells in lymphoblastic leukemia, treatment failure due to epitope loss occurs. Targeting multiple tumor-associated antigens (TAAs) may thus improve the outcome of CAR-T cell therapies. CARs developed to simultaneously target multiple targets are limited by the large size of each single-chain variable fragment and compromised protein folding when several single chains are linearly assembled. Here, we describe single-domain antibody mimics that function within CAR parameters but form a very compact structure. We show that antibody mimics targeting EGFR and HER2 of the ErbB receptor tyrosine kinase family can be assembled into receptor molecules, which we call antibody mimic receptors (amR). These amR can redirect T cells to recognize two different epitopes of the same antigen or two different TAAs in vitro and in vivo.


Subject(s)
Immunotherapy, Adoptive , Neoplasms/therapy , Receptor, ErbB-2/immunology , T-Lymphocytes/transplantation , Animals , Antibodies/immunology , Cell Line, Tumor , ErbB Receptors/immunology , Female , Humans , Male , Mice , T-Lymphocytes/immunology
14.
Adv Mater ; 31(23): e1900192, 2019 Jun.
Article in English | MEDLINE | ID: mdl-30916367

ABSTRACT

Chimeric antigen receptor (CAR)-redirected T lymphocytes (CAR T cells) show modest therapeutic efficacy in solid tumors. The desmoplastic structure of the tumor and the immunosuppressive tumor microenvironment usually account for the reduced efficacy of CAR T cells in solid tumors. Mild hyperthermia of the tumor reduces its compact structure and interstitial fluid pressure, increases blood perfusion, releases antigens, and promotes the recruitment of endogenous immune cells. Therefore, the combination of mild hyperthermia with the adoptive transfer of CAR T cells can potentially increase the therapeutic index of these cells in solid tumors. It is found that the chondroitin sulfate proteoglycan-4 (CSPG4)-specific CAR T cells infused in Nod scid gamma mice engrafted with the human melanoma WM115 cell line have superior antitumor activity after photothermal ablation of the tumor. The findings suggest that photothermal therapy facilitates the accumulation and effector function of CAR T cells within solid tumors.


Subject(s)
Antigens/metabolism , Hyperthermia, Induced , Immunotherapy, Adoptive/methods , Phototherapy/methods , Proteoglycans/metabolism , T-Lymphocytes/metabolism , Tumor Microenvironment , Animals , Cell Line, Tumor , Chondroitin Sulfate Proteoglycans/metabolism , Combined Modality Therapy , Female , Heterografts , Humans , Indocyanine Green/chemistry , Melanoma/pathology , Melanoma/therapy , Membrane Proteins/metabolism , Mice, SCID , Nanoparticles/chemistry , Photosensitizing Agents/chemistry , Polylactic Acid-Polyglycolic Acid Copolymer/chemistry , Skin Neoplasms/pathology , Skin Neoplasms/therapy , T-Lymphocytes/transplantation
15.
Cancer Cell ; 35(2): 221-237.e8, 2019 02 11.
Article in English | MEDLINE | ID: mdl-30753824

ABSTRACT

The high expression across multiple tumor types and restricted expression in normal tissues make B7-H3 an attractive target for immunotherapy. We generated chimeric antigen receptor (CAR) T cells targeting B7-H3 (B7-H3.CAR-Ts) and found that B7-H3.CAR-Ts controlled the growth of pancreatic ductal adenocarcinoma, ovarian cancer and neuroblastoma in vitro and in orthotopic and metastatic xenograft mouse models, which included patient-derived xenograft. We also found that 4-1BB co-stimulation promotes lower PD-1 expression in B7-H3.CAR-Ts, and superior antitumor activity when targeting tumor cells that constitutively expressed PD-L1. We took advantage of the cross-reactivity of the B7-H3.CAR with murine B7-H3, and found that B7-H3.CAR-Ts significantly controlled tumor growth in a syngeneic tumor model without evident toxicity. These findings support the clinical development of B7-H3.CAR-Ts.


Subject(s)
B7 Antigens/immunology , Carcinoma, Pancreatic Ductal/therapy , Immunotherapy, Adoptive/methods , Neuroblastoma/therapy , Ovarian Neoplasms/therapy , Pancreatic Neoplasms/therapy , Receptors, Chimeric Antigen/immunology , Animals , B7 Antigens/genetics , B7-H1 Antigen/immunology , CD28 Antigens/immunology , Carcinoma, Pancreatic Ductal/genetics , Carcinoma, Pancreatic Ductal/immunology , Carcinoma, Pancreatic Ductal/pathology , Cell Line, Tumor , Coculture Techniques , Female , Humans , Immunotherapy, Adoptive/adverse effects , Male , Mice, Inbred C57BL , Neuroblastoma/genetics , Neuroblastoma/immunology , Neuroblastoma/pathology , Ovarian Neoplasms/genetics , Ovarian Neoplasms/immunology , Ovarian Neoplasms/pathology , Pancreatic Neoplasms/genetics , Pancreatic Neoplasms/immunology , Pancreatic Neoplasms/pathology , Receptors, Chimeric Antigen/genetics , Signal Transduction , Tumor Burden , Tumor Necrosis Factor Receptor Superfamily, Member 9/immunology , Xenograft Model Antitumor Assays
16.
Appl Environ Microbiol ; 82(17): 5444-54, 2016 09 01.
Article in English | MEDLINE | ID: mdl-27371580

ABSTRACT

UNLABELLED: The l-isoaspartyl protein carboxyl methyltransferase (PCM) repairs protein damage resulting from spontaneous conversion of aspartyl or asparaginyl residues to isoaspartate and increases long-term stationary-phase survival of Escherichia coli under stress. In the course of studies intended to examine PCM function in metabolically inactive cells, we identified pcm as a gene whose mutation influences the formation of ofloxacin-tolerant persisters. Specifically, a Δpcm mutant produced persisters for an extended period in stationary phase, and a ΔglpD mutation drastically increased persisters in a Δpcm background, reaching 23% of viable cells. The high-persister double mutant showed much higher competitive fitness than the pcm mutant in competition with wild type during long-term stationary phase, suggesting a link between persistence and the mitigation of unrepaired protein damage. We hypothesized that reduced metabolism in the high-persister strain might retard protein damage but observed no gross differences in metabolism relative to wild-type or single-mutant strains. However, methylglyoxal, which accumulates in glpD mutants, also increased fitness, suggesting a possible mechanism. High-level persister formation in the Δpcm ΔglpD mutant was dependent on guanosine pentaphosphate [(p)ppGpp] and polyphosphate. In contrast, persister formation in the Δpcm mutant was (p)ppGpp independent and thus may occur by a distinct pathway. We also observed an increase in conformationally unstable proteins in the high-persister strain and discuss this as a possible trigger for persistence as a response to unrepaired protein damage. IMPORTANCE: Protein damage is an important factor in the survival and function of cells and organisms. One specific form of protein damage, the formation of the abnormal amino acid isoaspartate, can be repaired by a nearly universally conserved enzyme, PCM. PCM-directed repair is associated with stress survival and longevity in bacteria, insects, worms, plants, mice, and humans, but much remains to be learned about the specific effects of protein damage and repair. This paper identifies an unexpected connection between isoaspartyl protein damage and persisters, subpopulations in bacterial cultures showing increased tolerance to antibiotics. In the absence of PCM, the persister population in Escherichia coli bacteria increased, especially if the metabolic gene glpD was also mutated. High levels of persisters in pcm glpD double mutants correlated with increased fitness of the bacteria in a competition assay, and the fitness was dependent on the signal molecule (p)ppGpp; this may represent an alternative pathway for responding to protein damage.


Subject(s)
Escherichia coli Proteins/metabolism , Escherichia coli/enzymology , Guanosine Pentaphosphate/biosynthesis , Protein D-Aspartate-L-Isoaspartate Methyltransferase/metabolism , Anti-Bacterial Agents/pharmacology , Drug Resistance, Bacterial , Escherichia coli/drug effects , Escherichia coli/genetics , Escherichia coli/growth & development , Escherichia coli Proteins/genetics , Ofloxacin/pharmacology , Protein D-Aspartate-L-Isoaspartate Methyltransferase/genetics
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