ABSTRACT
MicroRNAs have been involved into many biological processes and are regarded as disease biomarkers. Simple, rapid, sensitive and selective method for microRNA detection is crucial for early diagnosis and therapy of diseases. In this work, sensitive fluorescence assay was developed for microRNA-21 detection based on DNA polymerase induced strand displacement amplification reaction, Mg2+-dependent DNAzyme catalysis reaction, and magnetic separation. In the presence of target microRNA-21, amounts of trigger DNA could be produced with DNA polymerase induced strand displacement amplification reaction, and the trigger DNA could be further hybridized with signal DNA, which was labeled with biotin and AMCA dye. After introduction of Mg2+, trigger DNA could form DNAzyme to cleave signal DNA. After magnetic separation, the DNA fragment with AMCA dye could give fluorescence signal, which was related to microRNA-21 concentration. Based on the two efficient signal amplifications, the developed method showed high detection sensitivity with low detection limit of 0.27fM (3σ). In addition, this fluorescence strategy also possessed excellent detection specificity, and could be applied to analyze microRNA-21 expression level in serum of cancer patient. According to the obtained results, the developed fluorescence method might be a promising detection platform for microRNA-21 quantitative analysis in biomedical research and clinical diagnosis.
Subject(s)
Biosensing Techniques/methods , DNA, Catalytic/chemistry , DNA/chemistry , Fluorescence , MicroRNAs/analysis , DNA Cleavage , DNA-Directed DNA Polymerase/chemistry , DNA-Directed DNA Polymerase/metabolism , Humans , Limit of Detection , Magnesium/chemistry , Neoplasms/diagnosis , Nucleic Acid Amplification Techniques/methods , Sensitivity and SpecificityABSTRACT
Cobalt (II) polyamidomine dendrimer was prepared by the reaction of cobalt chloride, glyoxal and polyamidomine dendrimer of 5.0 generation. The interaction of cobalt (II) polyamidomine dendrimer complex with herring sperm (hsDNA) was carried out using methylene blue (MB) as the probe molecule by absorption and fluorescence spectroscopy and synchronous fluorescence spectroscopy. The results showed that the intensity of absorption peaks and fluorescence peaks increased when the complex interacted with hsDNA. The effect of sodium chloride showed that sodium ion can significantly constrain the interaction of cobalt(II) polyamidomine dendrimer with hsDNA. The curves indicated the competitive inhibition of MB binding to hsDNA in the presence of cobalt (II) polyamidomine dendrimer complexes, also MB could insert into interior of cobalt (II) polyamidomine dendrimer complexes. The results suggested that the complex mainly interacted with negatively charged phosphate moieties on hsDNA through electrostatic attraction and stacked on the surface of double stranded hsDNA, which may reduce the binding affinity of MB to hsDNA in the surrounding site. It was indicated that sodium ion might neutralize the negatively charged phosphate backbone of hsDNA, and then weaken the electrostatic attraction between complexes and hsDNA.
Subject(s)
Amides/chemistry , Cobalt/chemistry , DNA/metabolism , Dendrimers/chemistry , Organometallic Compounds/chemistry , Organometallic Compounds/metabolism , Absorption , Animals , Methylene Blue/metabolism , Spectrometry, FluorescenceABSTRACT
The development of reliable, eco-friendly processes for the synthesis of nanomaterials is an important aspect of nanotechnology today. One approach that shows immense potential is based on the in situ synthesis of noble metal nanocolloids using natural biological material such as silk fibroin. In the present paper, the nano-Ag/silk-fibroin colloids were prepared by in situ reducing AgNO3 with silk-fibroin at room temperature without any reducing agent. UV-Vis absorption, atomic force microscopy, fluorescence spectra and resonance scattering spectra were used to study the preparation process and characterization of the nanocomposite. It was found that the formative Ag nanoparticles were attributed to the tyrosine residues in the chains of silk-fibroin that act as reduction agent in the reduction course of AgNO3, and the Ag nanoparticles were uniformly embedded in silk-fibroin colloid, which possess good dispersity and stability and can be kept for a long period. The strength of fluorescence spectra increased after reaction of silk-fibroin with AgNO3 solution, showing that there was a strong chemical adsorption between silver nanoparticles and silk-fibroin, and a stable complex layer was formed in silver nanoparticles. Meanwhile the existence of silver nanoparticles in silk-fibroin was proved by resonance scattering spectra.
