Conic formulation of fluence map optimization problems.

The convexity of objectives and constraints in fluence map optimization (FMO) for radiation therapy has been extensively studied. Next to convexity, there is another important characteristic of optimization functions and problems, which has thus far not been considered in FMO literature: conic representation. Optimization problems that are conically representable using quadratic, exponential and power cones are solvable with advanced primal-dual interior-point algorithms. These algorithms guarantee an optimal solution in polynomial time and have good performance in practice. In this paper, we construct conic representations for most FMO objectives and constraints. This paper is the first that shows that FMO problems containing multiple biological evaluation criteria can be solved in polynomial time. For fractionation-corrected functions for which no exact conic reformulation is found, we provide an accurate approximation that is conically representable. We present numerical results on the TROTS data set, which demonstrate very stable numerical performance for solving FMO problems in conic form. With ongoing research in the optimization community, improvements in speed can be expected, which makes conic optimization a promising alternative for solving FMO problems.

Optimal treatment plan adaptation using mid-treatment imaging biomarkers.

Previous studies on personalized radiotherapy (RT) have mostly focused on baseline patient stratification, adapting the treatment plan according to mid-treatment anatomical changes, or dose boosting to selected tumor subregions using mid-treatment radiological findings. However, the question of how to find the optimal adapted plan has not been properly tackled. Moreover, the effect of information uncertainty on the resulting adaptation has not been explored. In this paper, we present a framework to optimally adapt radiation therapy treatments to early radiation treatment response estimates derived from pre- and mid-treatment imaging data while considering the information uncertainty. The framework is based on the optimal stopping in radiation therapy (OSRT) framework. Biological response is quantified using tumor control probability (TCP) and normal tissue complication probability (NTCP) models, and these are directly optimized for in the adaptation step. Two adaptation strategies are discussed: (1) uniform dose adaptation and (2) continuous dose adaptation. In the first strategy, the original fluence-map is simply scaled upwards or downwards, depending on whether dose escalation or de-escalation is deemed appropriate based on the mid-treatment response observed from the radiological images. In the second strategy, a full NTCP-TCP-based fluence map re-optimization is performed to achieve the optimal adapted plans. We retrospectively tested the performance of these strategies on 14 canine head and neck cases treated with tomotherapy, using as response biomarker the change in the 3'-deoxy-3'[(18)F]-fluorothymidine (FLT)-PET signals between the pre- and mid-treatment images, and accounting for information uncertainty. Using a 10% uncertainty level, the two adaptation strategies both yield a noteworthy average improvement in guaranteed (worst-case) TCP.

Interfacially driven instability in the microchannel flow of a shear-banding fluid.

Using microparticle image velocimetry, we resolve the spatial structure of the shear-banding flow of a wormlike micellar surfactant solution in a straight microchannel. We reveal an instability of the interface between the shear bands, associated with velocity modulations along the vorticity direction. We compare our results with a detailed theoretical study of the diffusive Johnson-Segalman model. The quantitative agreement obtained favors an instability scenario previously predicted theoretically but hitherto unobserved experimentally, driven by a normal stress jump across the interface between the bands.

Competition between local collisions and collective hydrodynamic feedback controls traffic flows in microfluidic networks.

By studying the repartition of monodisperse droplets at a simple T junction, we show that the traffic of discrete fluid systems in microfluidic networks results from two competing mechanisms, whose significance is driven by confinement. Traffic is dominated by collisions occurring at the junction for small droplets and by collective hydrodynamic feedback for large ones. For each mechanism, we present simple models in terms of the pertinent dimensionless parameters of the problem.

Modeling phase behavior for quantifying micro-pervaporation experiments.

We present a theoretical model for the evolution of mixture concentrations in a micro-pervaporation device, similar to those recently presented experimentally. The described device makes use of the pervaporation of water through a thin PDMS membrane to build up a solute concentration profile inside a long microfluidic channel. We simplify the evolution of this profile in binary mixtures to a one-dimensional model which comprises two concentration-dependent coefficients. The model then provides a link between directly accessible experimental observations, such as the widths of dense phases or their growth velocity, and the underlying chemical potentials and phenomenological coefficients. It shall thus be useful for quantifying the thermodynamic and dynamic properties of dilute and dense binary mixtures.

Boosting migration of large particles by solute contrasts.

Brownian diffusion is a keystone concept in a large variety of domains, from physics, chemistry to biology. Diffusive transport controls situations as diverse as reaction-diffusion processes in biology and chemistry, Brownian ratchet processes, dispersion in microfluidic devices or even double-diffusive instability and salt-fingering phenomena in the context of ocean mixing. Although these examples span a broad range of length scales, diffusive transport becomes increasingly inefficient for larger particles. Applications, for example, in microfluidics, usually have recourse to alternative driving methods involving external sources to induce and control migration. Here, we demonstrate experimentally a strongly enhanced migration of large particles, achieved by slaving their dynamics to that of a fast carrier species, a dilute salt. The underlying fast salt diffusion leads to an apparent diffusive-like dynamics of the large particles, which is up to two orders of magnitude faster than their natural 'bare' diffusion. Moreover both spreading and focusing of the particle assembly can be achieved on demand. A model description shows a remarkable quantitative agreement with all measured data. Applications of this process are illustrated in microfluidics for filtering and concentrating operations, as well as in conjunction with standard hydrodynamic focusing. In a wider perspective, this mechanism can affect a broad range of scales and phenomena, from biological transport to the dispersion of sediments and pollutants in oceanographic situations.

Spatial cooperativity in soft glassy flows.

Amorphous glassy materials of diverse nature-concentrated emulsions, granular materials, pastes, molecular glasses-display complex flow properties, intermediate between solid and liquid, which are at the root of their use in many applications. A general feature of such systems, well documented yet not really understood, is the strongly nonlinear nature of the flow rule relating stresses and strain rates. Here we use a microfluidic velocimetry technique to characterize the flow of thin layers of concentrated emulsions, confined in gaps of different thicknesses by surfaces of different roughnesses. We find evidence for finite-size effects in the flow behaviour and the absence of an intrinsic local flow rule. In contrast to the classical nonlinearities of the rheological behaviour of amorphous materials, we show that a rather simple non-local flow rule can account for all the velocity profiles. This non-locality of the dynamics is quantified by a length, characteristic of cooperativity within the flow at these scales, that is unobservable in the liquid state (lower emulsion concentrations) and that increases with concentration in the jammed state. Beyond its practical importance for applications involving thin layers (for example, coatings), these non-locality and cooperativity effects have parallels in the behaviour of other glassy, jammed and granular systems, suggesting a possible fundamental universality.

Microfluidic exploration of the phase diagram of a surfactant/water binary system.

We investigate the behavior of a binary surfactant solution (AOT/water) as it is progressively concentrated in microfluidic evaporators. We observe in time a succession of phase transitions from a dilute solution up to a dense state, which eventually grows and invades the microchannels. Analyzing these observations, we show that, with a few experiments and a limited amount of material, our microdevices permit a semiquantitative screening of the equilibrium phase diagram as well as a few kinetic observations.

Elastic consequences of a single plastic event: a step towards the microscopic modeling of the flow of yield stress fluids.

With the eventual aim of describing flowing elasto-plastic materials, we focus here on the elementary process of such a flow, a plastic event, and compute the long-range perturbation it elastically induces in a medium submitted to a global shear strain. We characterize the effect of a nearby wall on this perturbation, and quantify the importance of finite-size effects. Although most of our explicit formulae refer to 2D situations, our statements hold for 3D situations as well.

Rheological chaos in a scalar shear-thickening model.

We study a simple scalar constitutive equation for a shear-thickening material at zero Reynolds number, in which the shear stress sigma is driven at a constant shear rate gamma; and relaxes by two parallel decay processes: a nonlinear decay at a nonmonotonic rate R(sigma(1)) and a linear decay at rate lambda sigma(2). Here sigma(1,2)(t)= tau(-1)(1,2) integral (t)(0)sigma(t')exp[-(t-t')/tau(1,2)]dt' are two retarded stresses. For suitable parameters, the steady state flow curve is monotonic but unstable; this arises when tau(2)>tau(1) and 0>R'(sigma)>-lambda so that monotonicity is restored only through the strongly retarded term (which might model a slow evolution of the material structure under stress). Within the unstable region we find a period-doubling sequence leading to chaos. Instability, but not chaos, persists even for the case tau(1)-->0. A similar generic mechanism might also arise in shear thinning systems and in some banded flows.

Electrically induced flows in the vicinity of a dielectric stripe on a conducting plane.

We report a theoretical and experimental study of the hydrodynamic flow induced by an a.c. electric field in the vicinity of a dielectric stripe deposited on a conducting plate. In the theoretical part, we model the stripe as a small change of the surface capacitance of the plate, and a perturbative approach is used to perform the calculations. This approach predicts an outwards rectified electro-osmotic slip along the surface that generates two steady counter-rotating rolls, the size of which decreases with the frequency. In the experimental section, we use tracers to determine the structure of the flow and investigate its dependence on the frequency and the amplitude of the applied voltage. The structure and amplitude of the observed flow compares satisfactorily with the theoretical analysis. This could guide the design of surface-controlled flows and help to understand the collective behavior of colloids near electrodes.

Jamming, hysteresis, and oscillation in scalar models for shear thickening.

We investigate shear thickening and jamming within the framework of a family of spatially homogeneous, scalar rheological models. These are based on the "soft glassy rheology" model of Sollich et al. [Phys. Rev. Lett. 78, 2020 (1997)], but with an effective temperature x that is a decreasing function of either the global stress sigma or the local strain l. For appropriate x=x(sigma), it is shown that the flow curves include a region of negative slope, around which the stress exhibits hysteresis under a cyclically varying imposed strain rate (.)gamma.A subclass of these x(sigma) have flow curves that touch the (.)gamma=0 axis for a finite range of stresses; imposing a stress from this range jams the system, in the sense that the strain gamma creeps only logarithmically with time t, gamma(t) approximately ln t. These same systems may produce a finite asymptotic yield stress under an imposed strain, in a manner that depends on the entire stress history of the sample, a phenomenon we refer to as history-dependent jamming. In contrast, when x=x(l) the flow curves are always monotonic, but we show that some x(l) generate an oscillatory strain response for a range of steady imposed stresses. Similar spontaneous oscillations are observed in a simplified model with fewer degrees of freedom. We discuss this result in relation to the temporal instabilities observed in rheological experiments and stick-slip behavior found in other contexts, and comment on the possible relationship with "delay differential equations" that are known to produce oscillations and chaos.

Casimir torques between anisotropic boundaries in nematic liquid crystals.

Fluctuation-induced interactions between anisotropic objects immersed in a nematic liquid crystal are shown to depend on the relative orientation of these objects. The resulting long-range "Casimir" torques are explicitly calculated for a simple geometry where elastic effects are absent. Our study generalizes previous discussions restricted to the case of isotropic walls, and leads to new proposals for experimental tests of Casimir forces and torques in nematics.

Effective-area elasticity and tension of micromanipulated membranes.

We evaluate the effective Hamiltonian governing, at the optically resolved scale, the elastic properties of micromanipulated membranes. We identify floppy, entropic-tense and stretched-tense regimes, representing different behaviors of the effective-area elasticity of the membrane. The corresponding effective tension depends on the microscopic parameters (total area, bending rigidity) and on the optically visible area, which is controlled by the imposed external constraints. We successfully compare our predictions with recent data on micropipette experiments.

Viscoelasticity of solutions of motile polymers.

We explore the linear viscoelastic response of an entangled, isotropic solution of polar semiflexible polymers with active, motile centers which generate longitudinal motion. Because of the activity of these centers, the short-time modulus displays two novel power-law regimes: Initially G(t) proportional to t(-1/8), then the response is "Rouse-like" with G(t) proportional to t(-1/2). At longer times we find accelerated relaxation due to directed reptation, resulting in a reduced low frequency viscosity.

Averaging rheological quantities in descriptions of soft glassy materials.

Many mean-field models have been introduced to describe the mechanical behavior of glassy materials. They often rely on averages performed over distributions of elements or states. We here underline that averaging is a more intricate procedure in mechanics than in more classical situations such as phase transitions in magnetic systems. This leads us to modify the predictions of the recently proposed soft glassy rheology model for soft glassy materials, for which we suggest that the viscosity should diverge at the glass transition temperature T(g) with an exponential form eta - exp[A/(T-T(g))].

Pumping liquids using asymmetric electrode arrays

Following a general symmetry argument, I suggest using locally asymmetric electric geometries to pump liquid in channels or drive droplets on surfaces. This strategy, which requires no global gradient in the pumping direction, should be of interest for microfluidic devices and micro-electro-mechanical systems. A practical realization consists in using polar periodic arrays of electrodes addressed by an ac voltage difference. A simple electro-osmotic model provides an estimate of the pumping velocities achievable.

Electroosmotic Flows Created by Surface Defects in Capillary Electrophoresis.

We compute the electroosmotic flow in nonuniformly charged planar and cylindrical capillaries for the limit of low-Reynolds-number flows and thin Debye layers. Analytical formulae for the velocity field are provided for the general case of an arbitrary surface inhomogeneity but we also focus on various specific defect geometries. Many important features can be obtained from the simple lubrication approximation. The pressure jump induced by the presence of such surface defects is calculated and the possible occurrence of recirculating flows is discussed, as are effects of the flow perturbations on dispersion in capillary electrophoresis. Copyright 1999 Academic Press.

Energy transduction of isothermal ratchets: generic aspects and specific examples close to and far from equilibrium.

We study the energetics of isothermal ratchets which are driven by a chemical reaction between two states, and operate in contact with a single heat bath of constant temperature. We discuss generic aspects of energy transduction such as Onsager relations in the linear response regime as well as the efficiency and dissipation close to and far from equilibrium. In the linear response regime where the system operates reversibly, the efficiency is in general nonzero. Studying the properties for specific examples of energy landscapes and transitions, we observe in the linear response regime that the efficiency can have a maximum as a function of temperature. Far from equilibrium in the fully irreversible regime, we find a maximum of the efficiency with values larger than in the linear regime for an optimal choice of the chemical driving force. We show that the corresponding efficiencies can be of the order of 50%. A simple analytic argument allows us to estimate the efficiency in this irreversible regime for small external forces.

Moving droplets on asymmetrically structured surfaces.

It is shown theoretically and experimentally that a liquid droplet can move on a surface structured with a locally asymmetric pattern when a breathing of the drop is induced by external means. Two different situations can be envisioned: a drop whose volume is modulated and a drop whose equilibrium contact angle is switched between two extreme values. This last case was experimentally investigated using electric fields acting on water droplets in castor oil. The main trends of the theory are verified although a quantitative analysis would necessitate either a simpler experimental geometry or a more elaborate model. The results are discussed with a miniaturization of the setup in mind which would have important potential applications in the field of integrated analysis systems.