Oily bilge water treatment using indigenous soil bacteria: Implications for recycling the treated sludge in vegetable farming.

Hydrocarbon contamination from motorized vessels operating on seas threaten marine ecosystems and need to treated efficiently. A bilge wastewater treatment using indigenous bacteria isolated from oil contaminated soil was studied. Five bacterial isolates (Acinetobacter baumanni, Klebsiella aerogenes, Pseudomonas fluorescence, Bacillus subtilis and Brevibacterium linens) were isolated from port soil and used in the bilge water treatment. Their crude oil degradation abilities were first confirmed experimentally. The single species and the consortia of each two species were compared in an experiment where the conditions were first optimized. The optimized conditions were 40 °C, carbon source glucose, nitrogen source ammonium chloride, pH 8, and salinity 25%. Each of the species and each combination was able to degrade oil. K. aerogenes and P. fluorescence were the most efficient in reducing the crude oil concentration. The crude oil concentration was reduced from 290 mg/L to 23 mg/L and 21 mg/L, respectively. The respective values for the loss in turbidity were from 320 NTU to 29 mg/L and 27 NTU and for BOD loss from 210 mg/L to 18 mg/L and 16 mg/L. Mn was reduced from 25.4 mg/L to 1.2 mg/L and 1.0 mg/L, Cu from 26.8 mg/L to 2.9 mg/L and 2.4 mg/L, and Pb from 29.8 mg/L to 1.5 mg/L and 1.8 mg/L. The consortium of K. aerogenes and P. fluorescence in the bilge wastewater treatment reduced the crude oil concentration to 11 mg/L. After the treatment, the water was removed and the sludge was composted with palm molasses and cow dung. After 60 days of composting and inoculation with different bacterial consortia, the final product was used as a seedbed for vegetables. The compost with the consortium K. aerogenes and P. fluorescence promoted vegetable plant growth most and could be used in farming.

Marine fungi showing multifunctional activity against human pathogenic microbes and cancer.

Multifunctional drugs have shown great promise in biomedicine. Organisms with antimicrobial and anticancer activity in combination with antioxidant activity need further research. The Red Sea and the Arabian Gulf coasts were randomly sampled to find fungi with multifunctional activity. One hundred strains (98 fungi and 2 lichenized forms) were isolated from 15 locations. One-third of the isolates inhibited clinical bacterial (Staphylococcus aureus, Bacillus subtilis, Vibrio cholerae, Salmonella typhi, S. paratyphi) and fungal pathogens (Talaromycets marneffei, Malassezia globose, Cryptococcus neoformans, Candida albicans, Aspergillus fumigatus) and four cancer cell lines (Hep G2 liver, A-549 lung, A-431skin, MCF 7 breast cancer). Bacterial and cancer inhibition was often accompanied by a high antioxidant activity, as indicated by the principal component analysis (PCA). PCA also indicated that fungal and bacterial pathogens appeared to be inhibited mostly by different marine fungal isolates. Strains with multifunctional activity were found more from the Rea Sea than from the Arabian Gulf coasts. The highest potential for multifunctional drugs were observed for Acremonium sp., Acrocalymma sp., Acrocalymma africana, Acrocalymma medicaginis (activity reported for the first time), Aspergillus sp. Cladosporium oxysporum, Emericellopsis alkaline, Microdochium sp., and Phomopsis glabrae. Lung, skin, and breast cancers were inhibited 85%-97% by Acremonium sp, while most of the isolates showed low inhibition (ca 20%). The highest antifungal activity was observed for Acremonium sp., Diaporthe hubeiensis, Lasiodiplodia theobromae, and Nannizia gypsea. One Acremonium sp. is of particular interest to offer a multifunctional drug; it displayed both antifungal and antibacterial activity combined with high antioxidant activity (DPPH scavenging 97%). A. medicaginis displayed combined antibacterial, anticancer, and antioxidant activity being of high interest. Several genera and some species included strains with both high and low biological activities pointing out the need to study several isolates to find the most efficient strains for biomedical applications.

Treatment of heavy metal-polluted sewage sludge using biochar amendments and vermistabilization.

Heavy metal contamination of sewage sludge hampers its recycling. Contaminated sewage sludge was amended with different proportions of biochar and vermistabilized. Biochar produced from wheat straw was added at four proportions (0%, 2%, 4%, and 6%). Ten earthworms Eisenia fetida were added, and the sludge was vermistabilized for 60 days. Heavy metal and nutrient concentrations and the accumulation of metals to E. fetida were measured. The treatment with 4% biochar was the most efficient in reducing the concentrations of heavy metals. The concentration of Cd decreased 55%, Cr 28%, Cu 30%, and Pb 21%. The concentrations of plant nutrients increased: total N 43%, total P 92%, and total K 60%. E. fetida accumulated all heavy metals in their internal tissues. The survival and reproductive rate of E. fetida improved during the vermistabilization process. We interpret that the biochar alone did not improve the decomposition process, but the main actors were the earthworms E. fetida. The most efficient proportion of biochar was 4%, not the highest tested (6%). We recommend 4% biochar to be used in the vermistabilization of heavy metal-contaminated municipal sewage sludge. The study benefits both the management of heavy metal-contaminated sewage sludge and agriculture where the final vermistabilization product can be used to improve crop production.

Improving the efficiency of vermicomposting of polluted organic food wastes by adding biochar and mangrove fungi.

Vermicomposting of food waste amended with biochar and cow dung was studied during a 90-day composting period. The improvement of the vermicomposting process by adding three mangrove fungal species as additional amendments were studied. The use of mangrove fungi Acrophialophora jodhpurensis as a bio-catalytic actor during vermicomposting proved to be beneficial in terms of final compost quality (available N, P and K) and the shortening of the composting period. All three fungal species, however, reached the neutral pH at the end of the composting period and appeared to be beneficial. Heavy metal (Cd, Ni, Pb, Zn, Cu and Cr) concentrations decreased throughout the composting process. Food waste can be treated using vermicomposting with biochar, cow dung and the mangrove fungi A. jodhpurensis. The final vermicomposting product is suitable for agricultural use.

Biomonitoring coastal pollution on the Arabian Gulf and the Gulf of Aden using macroalgae: A review.

The transporting of oil via the Arabian Gulf for centuries has resulted in the pollution of the coasts by heavy metals, and therefore, remediation actions are needed. In this review, we first evaluated heavy metal pollution on the coasts by assembling the research on published metal concentrations in sediments and water bodies surrounding the Arabian Peninsula. Research revealed uneven pollution of heavy metals, meaning that before remediation, the most polluted sites should be found. This could be done most conveniently using biomonitoring. The Arabian Peninsula is a unique ecoregion due to the extremely high temperature in summer, and therefore, it needs its specific standardization procedure for biomonitoring. To get an overview of the current information on biomonitoring, we gathered a dataset of 306 published macroalgal observations from the Arabian Gulf and the Gulf of Aden. The heavy metal concentration dataset of macroalgae was analyzed with a multivariate principal component analysis. As a result of the published works elsewhere and our data analysis, we recommend that green Ulva and brown Padina species are used in the biomonitoring of heavy metal pollution on the Arabian Peninsula's eastern and southern coasts. However, more species might be needed if these species do not occur at the site. The species incidence should first be monitored systematically in each area, and common species should be used. The species used should be chosen locally and sampled at the same depth at low tide in spring or early summer, from February to May, before the hottest season. The composite samples of different apical sections of the thallus should be collected. The standardization of the monitoring processes benefits future remediation actions.

Bioremediation of ossein effluents using the filamentous marine cyanobacterium Cylindrospermum stagnale.

Wastewater containg proteinaceous ossein effluents are problematic to be treated. We studied the possibility to treat ossein effluents with the marine cyanobacterium strain Cylindrospermum stagnale. After optimizing the culture conditions of the bacterium, three different types of ossein effluents were tested: dicalcium phosphate (DCP), high total dissolved solids (HTDS) and low total dissolved (LTDS). The effluents were diluted with sea water at the following ratios 1:1, 2:1 and 3:2. The optimum operating conditions were at 3000 lux light intensity and 37 °C temperature. The highest degradation of ossein effluens by C. stagnale was attained for a dilution ratio of 1:1. However, less diluted ossein effluents reduced the growth of C. stagnale drastically. The degradation was shown by measuring the chlorophyll a content and the dry weight of bacterial cells during a seven-day incubation period degradation. Fourier Transform Infrared Spectroscopy (FT-IR) analysis verified the degradation showing the presence of the degradation products of ossein (i.e. calcium carbonate and calcite) in the culture medium. Lipid composition in fatty acids appeared to be suitable for biofuel production. The results showed that the marine cyanobacterium C. stagnale can be used to treat ossein effluents, and at the same time, to produce biofuel in a sustainable way.

Marine microorganisms as an untapped source of bioactive compounds.

The search for novel biologically active molecules has extended to the screening of organisms associated with less explored environments. In this sense, Oceans, which cover nearly the 67% of the globe, are interesting ecosystems characterized by a high biodiversity that is worth being explored. As such, marine microorganisms are highly interesting as promising sources of new bioactive compounds of potential value to humans. Some of these microorganisms are able to survive in extreme marine environments and, as a result, they produce complex molecules with unique biological interesting properties for a wide variety of industrial and biotechnological applications. Thus, different marine microorganisms (fungi, myxomycetes, bacteria, and microalgae) producing compounds with antioxidant, antibacterial, apoptotic, antitumoral and antiviral activities have been already isolated. This review compiles and discusses the discovery of bioactive molecules from marine microorganisms reported from 2018 onwards. Moreover, it highlights the huge potential of marine microorganisms for obtaining highly valuable bioactive compounds.

Effect of sampling time on the heavy metal concentrations of brown algae: A bioindicator study on the Arabian Gulf coast.

Macroalgae have often been studied as bioindicators for heavy metal pollution on sea coasts including the Arabian Gulf. On the Arabian Gulf coasts, heavy metals are continuously being released by industrial activities and therefore, pollution monitoring is needed. Biomonitoring studies using macroalgae has given highly different assessments due to the variability in algal species and sampling time points. We carried out a systematic monthly sampling of brown algae (Phaeophyta) from three locations on the western coast of the Arabian Gulf between September and February 2018. One urban area (Uqair) and two oil refining areas (Ras Tanura and Jubail) were monitored due to they have a common brown macroalgae species composition. The incidence of Cystoseira myrica, C. trinodis C. osmundacea, Hormophysa cuneiformis, Sargassum aquifolium, S. latifolium, S. filipendula and Padina boryana varied among the sites and with the time of year within the sites. The concentrations of Co, Cd and Pb varied among the sampling sites, the algal species and the sampling time points remarkably. A tentative time-trend increasing towards February was observed for some species. However, it appeared that neither optimum sampling time point, nor superior brown algae species could be recommended. The highest heavy metal accumulation was observed in Padina boryana. However, this species grew only on the two oil polluted sites. We concluded that some brown algae species can be used for biomonitoring heavy metal pollution on the western coast of the Arabian Gulf. The species incidence should be monitored systematically and the species used should be chosen locally and sampled at the same time of the year.

Accumulation of heavy metals in a macrophyte Phragmites australis: implications to phytoremediation in the Arabian Peninsula wadis.

Heavy metal-polluted wetlands could be remediated by harvesting metal accumulating plants, i.e., using phytoextraction. We studied a macrophyte Phragmites australis and assessed its potential to be utilized in the phytoremediation of heavy metal-polluted wetlands, specifically in wadis in the Arabian Peninsula. We sampled six polluted wadi sites and measured Mn, Fe, Ni, Cu, Zn, Cd, and Pb concentrations in the roots, rhizomes, stems, and leaves of P. australis, as well as in sediment and water. We analyzed the correlations between different plant organs, water, and sediment, and calculated the accumulation and translocation of the metals to the plant organs. We found indications for the accumulation of Cd, Zn, and Pb into P. australis and somewhat contradictory indications for the accumulation of Cu. We suggest that P. australis is a good candidate to be utilized in the phytoremediation of heavy metal-polluted wadis in the Arabian Peninsula where the few wadis offer many valuable ecosystem services for urban citizens.

Potential use of green algae as a biosorbent for hexavalent chromium removal from aqueous solutions.

The hexavalent chromium Cr(VI) poses a threat as a hazardous metal and its removal from aquatic environments through biosorption has gained attention as a viable technology of bioremediation. We evaluated the potential use of three green algae (Cladophora glomerata, Enteromorpha intestinalis and Microspora amoena) dry biomass as a biosorbent to remove Cr(VI) from aqueous solutions. The adsorption capacity of the biomass was determined using batch experiments. The adsorption capacity appeared to depend on the pH. The optimum pH with the acid-treated biomass for Cr(VI) biosorption was found to be 2.0 at a constant temperature, 45 °C. Among the three genera studied, C. glomerata recorded a maximum of 66.6% removal from the batch process using 1.0 g dried algal cells/100 ml aqueous solution containing an initial concentration of 20 mg/L chromium at 45 °C and pH 2.0 for 60 min of contact time. Langmuir and Freundlich isotherm equations fitted to the equilibrium data, Freundlich was the better model. Our study showed that C. glomerata dry biomass is a suitable candidate to remove Cr(VI) from aqueous solutions.

Lead removal by Spirulina platensis biomass.

In this investigation, we report on the biosorption of Pb (II) from aqueous solutions by the nonliving biomass of the micro-alga (cyanobacterium) Spirulina platensis. Propagation of the micro-alga was carried out in outside oblong raceway ponds. The biomass was cleaned, dried and used for the investigation. The effects of pH, adsorbent dose, temperature, initial concentration of Pb (II), and contact time on the adsorption of lead by the dry biomass were studied. The experiments were carried out in 250 ml conical flasks containing 100 ml of test solutions using an orbital incubator at 150 rpm. Concentrations of the metal before and after the experiments were measured using Atomic Absorption Spectrophotometer. Very high levels of Pb (II) removal (>91%) were obtained. The optimum conditions for maximal adsorption by S. platensis were found to be pH 3; 2 g of adsorbent dose; incubation at 26°C; 100 mg/l of lead initial concentration and 60 minutes of contact time. The experimental data fitted well with Freundlich isotherm equation with R(2) values greater than 0.97. Based on our results, we recommend the utilization of S. platensis biomass for heavy metal removal from aqueous solutions.

Adsorptive removal of cadmium ions by Spirulina platensis dry biomass.

Cadmium is one of the most toxic substances found in aquatic ecosystems. This metal tends to accumulate in photosynthetic plants and fish and is transferred to humans causing many diseases. It has to be removed from our environment to reduce any health risks. Dry biomass of the microalga (cyanobacterium) Spirulina platensis was used as biosorbent for the removal of cadmium ions (Cd(2+)) from aqueous solutions. The effects of different levels of pH (3-9), biomass concentration (0.25-2 g), temperature (18-46 °C), metal concentration (40-200 mg/l) and contact time (30-120 min) were tested. Batch cultures were carried out in triplicate in an orbital shaker at 150 rpm. After centrifuging the biomass, the remaining levels of cadmium ions were measured in the supernatant by Atomic Absorption Spectrometer. Very high levels of removal, reaching up to 87.69% were obtained. The highest percentage of removal was reached at pH 8, 2 g of biosorbent, 26 °C, and 60 mg/l of cadmium concentration after 90 min of contact time. Langmuir and Freundlich isotherm models were applied to describe the adsorption isotherm of the metal ions by S. platensis. Langmuir model was found to be in better correlation with experimental data (R (2) = 0.92). Results of this study indicated that S. platensis is a very good candidate for the removal of heavy metals from aquatic environments. The process is feasible, reliable and eco-friendly.

Assessment of antioxidant activities in roots of Miswak (Salvadora persica) plants grown at two different locations in Saudi Arabia.

Traditionally, in Middle Eastern countries, many cultures use chewing sticks of arak for medicinal purposes especially, for oral cleanliness care. It was used by Muslims for treatment of teeth and highly recommended to be used by Muslims during the whole day. Therefore, the present work aimed to determine the total phenolic content and total flavonoids in two Miswak extracts obtained from arak roots collected from two different localities in Saudi Arabia. They were extracted with aqueous ethanol (80%) and used to estimate in vitro their antioxidative abilities. The new findings showed that the two tested extracts contained significantly different amounts of both total phenolic content and total flavonoids. According to the increase of total phenolic contents and total flavonoids obtained from the two extracts, Miswak collected from the southern region was found to contain more contents than those collected from the middle region. The results of antioxidant activities of Miswak root extract obtained by using different in vitro methods were varied depending on the technique used. According to the malondialdehyde (MDA) method, hydrogen peroxide (H2O2) scavenging ability and 1,1-diphenyl-2-picrylhydrazyl (DPPH) methods, the two Miswak extracts exhibited to have high to very high antioxidant activities. Mostly, the values of antioxidant activities of Southern region have been shown to be always the highest.

DNA marker technology for wildlife conservation.

Use of molecular markers for identification of protected species offers a greater promise in the field of conservation biology. The information on genetic diversity of wildlife is necessary to ascertain the genetically deteriorated populations so that better management plans can be established for their conservation. Accurate classification of these threatened species allows understanding of the species biology and identification of distinct populations that should be managed with utmost care. Molecular markers are versatile tools for identification of populations with genetic crisis by comparing genetic diversities that in turn helps to resolve taxonomic uncertainties and to establish management units within species. The genetic marker analysis also provides sensitive and useful tools for prevention of illegal hunting and poaching and for more effective implementation of the laws for protection of the endangered species. This review summarizes various tools of DNA markers technology for application in molecular diversity analysis with special emphasis on wildlife conservation.

A simple method for DNA extraction from mature date palm leaves: impact of sand grinding and composition of lysis buffer.

Molecular marker techniques have been widely used for cultivar identification of inbred date palms (Phoenix dactylifera L.; Arecaceae) and biodiversity conservation. Isolation of highly pure DNA is the prerequisite for PCR amplification and subsequent use such as DNA fingerprinting and sequencing of genes that have recently been developed for barcoding. To avoid problems related to the preservation and use of liquid nitrogen, we examined sterile sand for grinding the date palm leaves. Individual and combined effects of sodium chloride (NaCl), polyvinylpyrrolidone (PVP) and lithium chloride (LiCl) with the cetyltrimethylammonium bromide (CTAB) method for a DNA yield of sufficient purity and PCR amplification were evaluated in this study. Presence of LiCl and PVP alone or together in the lysis buffer did not significantly improve the DNA yield and purity compared with the addition of NaCl. Our study suggested that grinding of date palm leaf with sterile sand and inclusion of NaCl (1.4 M) in the lysis buffer without the costly use of liquid nitrogen, PVP and LiCl, provides a DNA yield of sufficient purity, suitable for PCR amplification.

A brief review of molecular techniques to assess plant diversity.

Massive loss of valuable plant species in the past centuries and its adverse impact on environmental and socioeconomic values has triggered the conservation of plant resources. Appropriate identification and characterization of plant materials is essential for the successful conservation of plant resources and to ensure their sustainable use. Molecular tools developed in the past few years provide easy, less laborious means for assigning known and unknown plant taxa. These techniques answer many new evolutionary and taxonomic questions, which were not previously possible with only phenotypic methods. Molecular techniques such as DNA barcoding, random amplified polymorphic DNA (RAPD), amplified fragment length polymorphism (AFLP), microsatellites and single nucleotide polymorphisms (SNP) have recently been used for plant diversity studies. Each technique has its own advantages and limitations. These techniques differ in their resolving power to detect genetic differences, type of data they generate and their applicability to particular taxonomic levels. This review presents a basic description of different molecular techniques that can be utilized for DNA fingerprinting and molecular diversity analysis of plant species.

Application of simple sequence repeat (SSR) markers for molecular diversity and heterozygosity analysis in maize inbred lines.

There is an important role of understanding the genetic diversity among and within inbred lines at the molecular level for maize improvement in different breeding programs. The present study was devoted to estimate the level of genetic diversity among the inbred lines of maize using the simple sequence repeat analysis (SSR). The application of six different SSR markers successfully provided the information on similarity or diversity as well as the heterozygosity of the allelic loci for all the eight inbred line of maize.

Bayesian, maximum parsimony and UPGMA models for inferring the phylogenies of antelopes using mitochondrial markers.

This investigation was aimed to compare the inference of antelope phylogenies resulting from the 16S rRNA, cytochrome-b (cyt-b) and d-loop segments of mitochondrial DNA using three different computational models including Bayesian (BA), maximum parsimony (MP) and unweighted pair group method with arithmetic mean (UPGMA). The respective nucleotide sequences of three Oryx species (Oryx leucoryx, Oryx dammah and Oryx gazella) and an out-group (Addax nasomaculatus) were aligned and subjected to BA, MP and UPGMA models for comparing the topologies of respective phylogenetic trees. The 16S rRNA region possessed the highest frequency of conserved sequences (97.65%) followed by cyt-b (94.22%) and d-loop (87.29%). There were few transitions (2.35%) and none transversions in 16S rRNA as compared to cyt-b (5.61% transitions and 0.17% transversions) and d-loop (11.57% transitions and 1.14% transversions) while comparing the four taxa. All the three mitochondrial segments clearly differentiated the genus Addax from Oryx using the BA or UPGMA models. The topologies of all the gamma-corrected Bayesian trees were identical irrespective of the marker type. The UPGMA trees resulting from 16S rRNA and d-loop sequences were also identical (Oryx dammah grouped with Oryx leucoryx) to Bayesian trees except that the UPGMA tree based on cyt-b showed a slightly different phylogeny (Oryx dammah grouped with Oryx gazella) with a low bootstrap support. However, the MP model failed to differentiate the genus Addax from Oryx. These findings demonstrate the efficiency and robustness of BA and UPGMA methods for phylogenetic analysis of antelopes using mitochondrial markers.