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1.
J Med Genet ; 39(11): 796-803, 2002 Nov.
Article in English | MEDLINE | ID: mdl-12414817

ABSTRACT

Autosomal recessive distal renal tubular acidosis (rdRTA) is characterised by severe hyperchloraemic metabolic acidosis in childhood, hypokalaemia, decreased urinary calcium solubility, and impaired bone physiology and growth. Two types of rdRTA have been differentiated by the presence or absence of sensorineural hearing loss, but appear otherwise clinically similar. Recently, we identified mutations in genes encoding two different subunits of the renal alpha-intercalated cell's apical H(+)-ATPase that cause rdRTA. Defects in the B1 subunit gene ATP6V1B1, and the a4 subunit gene ATP6V0A4, cause rdRTA with deafness and with preserved hearing, respectively. We have investigated 26 new rdRTA kindreds, of which 23 are consanguineous. Linkage analysis of seven novel SNPs and five polymorphic markers in, and tightly linked to, ATP6V1B1 and ATP6V0A4 suggested that four families do not link to either locus, providing strong evidence for additional genetic heterogeneity. In ATP6V1B1, one novel and five previously reported mutations were found in 10 kindreds. In 12 ATP6V0A4 kindreds, seven of 10 mutations were novel. A further nine novel ATP6V0A4 mutations were found in "sporadic" cases. The previously reported association between ATP6V1B1 defects and severe hearing loss in childhood was maintained. However, several patients with ATP6V0A4 mutations have developed hearing loss, usually in young adulthood. We show here that ATP6V0A4 is expressed within the human inner ear. These findings provide further evidence for genetic heterogeneity in rdRTA, extend the spectrum of disease causing mutations in ATP6V1B1 and ATP6V0A4, and show ATP6V0A4 expression within the cochlea for the first time.


Subject(s)
Acidosis, Renal Tubular/genetics , Hearing Loss, Sensorineural/genetics , Proton-Translocating ATPases/genetics , Acidosis, Renal Tubular/enzymology , Adolescent , Adult , Child , DNA/chemistry , DNA/genetics , DNA Mutational Analysis , Ear, Inner/enzymology , Epithelium/enzymology , Female , Gene Expression Regulation, Enzymologic , Genes, Recessive/genetics , Genetic Linkage , Genotype , Hearing Loss, Sensorineural/enzymology , Humans , Male , Microsatellite Repeats , Mutation , Polymorphism, Single Nucleotide , Polymorphism, Single-Stranded Conformational
2.
Nat Genet ; 26(1): 71-5, 2000 Sep.
Article in English | MEDLINE | ID: mdl-10973252

ABSTRACT

The multi-subunit H+-ATPase pump is present at particularly high density on the apical (luminal) surface of -intercalated cells of the cortical collecting duct of the distal nephron, where vectorial proton transport is required for urinary acidification. The complete subunit composition of the apical ATPase, however, has not been fully agreed upon. Functional failure of -intercalated cells results in a group of disorders, the distal renal tubular acidoses (dRTA), whose features include metabolic acidosis accompanied by disturbances of potassium balance, urinary calcium solubility, bone physiology and growth. Mutations in the gene encoding the B-subunit of the apical pump (ATP6B1) cause dRTA accompanied by deafness. We previously localized a gene for dRTA with preserved hearing to 7q33-34 (ref. 4). We report here the identification of this gene, ATP6N1B, which encodes an 840 amino acid novel kidney-specific isoform of ATP6N1A, the 116-kD non-catalytic accessory subunit of the proton pump. Northern-blot analysis demonstrated ATP6N1B expression in kidney but not other main organs. Immunofluorescence studies in human kidney cortex revealed that ATP6N1B localizes almost exclusively to the apical surface of -intercalated cells. We screened nine dRTA kindreds with normal audiometry that linked to the ATP6N1B locus, and identified different homozygous mutations in ATP6N1B in eight. These include nonsense, deletion and splice-site changes, all of which will truncate the protein. Our findings identify a new kidney-specific proton pump 116-kD accessory subunit that is highly expressed in proton-secreting cells in the distal nephron, and illustrate its essential role in normal vectorial acid transport into the urine by the kidney.


Subject(s)
Acidosis, Renal Tubular/genetics , Hearing/genetics , Mutation , Pregnancy Proteins , Proton Pumps/chemistry , Proton Pumps/genetics , Proton-Translocating ATPases , Suppressor Factors, Immunologic , Acidosis, Renal Tubular/metabolism , Acidosis, Renal Tubular/urine , Adenosine Triphosphatases/genetics , Adenosine Triphosphatases/metabolism , Adolescent , Adult , Amino Acid Sequence , Audiometry , Blotting, Northern , Brain/metabolism , Child , Child, Preschool , Chromosomes, Human, Pair 7 , Contig Mapping , DNA, Complementary/metabolism , Exons , Female , Gene Deletion , Genes, Recessive , Genetic Linkage , Genetic Markers , Hearing/physiology , Homozygote , Humans , Kidney/metabolism , Kidney/pathology , Kidney Cortex/metabolism , Male , Microscopy, Fluorescence , Mitochondrial Proton-Translocating ATPases , Models, Genetic , Molecular Sequence Data , Pedigree , Physical Chromosome Mapping , Polymorphism, Genetic , Polymorphism, Single-Stranded Conformational , Protein Biosynthesis , Protein Isoforms , Proton Pumps/biosynthesis , RNA Splicing , Recombination, Genetic , Sequence Homology, Amino Acid , Tissue Distribution , Vacuolar Proton-Translocating ATPases
3.
Am J Hum Genet ; 65(6): 1656-65, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10577919

ABSTRACT

Failure of distal nephrons to excrete excess acid results in the "distal renal tubular acidoses" (dRTA). Early childhood features of autosomal recessive dRTA include severe metabolic acidosis with inappropriately alkaline urine, poor growth, rickets, and renal calcification. Progressive bilateral sensorineural hearing loss (SNHL) is evident in approximately one-third of patients. We have recently identified mutations in ATP6B1, encoding the B-subunit of the collecting-duct apical proton pump, as a cause of recessive dRTA with SNHL. We now report the results of genetic analysis of 13 kindreds with recessive dRTA and normal hearing. Analysis of linkage and molecular examination of ATP6B1 indicated that mutation in ATP6B1 rarely, if ever, accounts for this phenotype, prompting a genomewide linkage search for loci underlying this trait. The results strongly supported linkage with locus heterogeneity to a segment of 7q33-34, yielding a maximum multipoint LOD score of 8.84 with 68% of kindreds linked. The LOD-3 support interval defines a 14-cM region flanked by D7S500 and D7S688. That 4 of these 13 kindreds do not support linkage to rdRTA2 and ATP6B1 implies the existence of at least one additional dRTA locus. These findings establish that genes causing recessive dRTA with normal and impaired hearing are different, and they identify, at 7q33-34, a new locus, rdRTA2, for recessive dRTA with normal hearing.


Subject(s)
Acidosis, Renal Tubular/genetics , Anion Transport Proteins , Antiporters , Chromosome Mapping , Chromosomes, Human, Pair 7/genetics , Genes, Recessive/genetics , Hearing/physiology , Acidosis, Renal Tubular/physiopathology , Adenosine Triphosphatases/genetics , Adult , Child , Child, Preschool , Chromosomes, Human, Pair 2/genetics , Consanguinity , DNA Mutational Analysis , Female , Hearing/genetics , Humans , Hydrogen-Ion Concentration , Infant , Infant, Newborn , Lod Score , Male , Membrane Proteins/genetics , Middle East , Molecular Sequence Data , Pakistan , Pedigree , Polymorphism, Single-Stranded Conformational , SLC4A Proteins
4.
Ann Saudi Med ; 13(3): 215-21, 1993 May.
Article in English | MEDLINE | ID: mdl-17590664

ABSTRACT

Sixty-eight Saudi children, 17 to 19 months of age, were enrolled in a study to evaluate the safety and immunogenicity of Hemophilus influenzae type B capsular polysaccharide diphtheria toxoid (PRP-D) conjugate vaccine. Adverse reactions to the vaccine were determined through a questionnaire administered to the parents. Local and systemic reactions to the vaccine were mild and resolved within 24 to 48 hours. PRP antibody levels were measured prior to and one to two months following immunization. PRP antibody levels in the pre-immunization sera of 77% of subjects were below the level associated with immediate protection (>/=0.15 microg/ml), and 88% were below the level associated with long-term protection (>/=1 microg/ml) from Hemophilus influenzae type B (HIB) disease. After one dose of PRP-D vaccine, 100% of recipients achieved antibody levels of >/=0.15 microg/ml, and 85% achieved levels of >/=1 microg/ml. The geometric mean level of antibody after immunization (5.66 microg/ml) was significantly higher than that before immunization (0.098 microg/ml). All subjects had a twofold or greater increase in antibody level in response to the vaccine. We conclude that PRP-D is a safe and highly immunogenic vaccine in this age group of Saudi children.

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