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1.
Genes (Basel) ; 14(5)2023 04 26.
Article in English | MEDLINE | ID: mdl-37239336

ABSTRACT

Cordia monoica is a member of the Boraginaceae family. This plant is widely distributed in tropical regions and has a great deal of medical value as well as economic importance. In the current study, the complete chloroplast (cp) genome of C. monoica was sequenced, assembled, annotated, and reported. This circular chloroplast genome had a size of 148,711 bp, with a quadripartite structure alternating between a pair of repeated inverted regions (26,897-26,901 bp) and a single copy region (77,893 bp). Among the 134 genes encoded by the cp genome, there were 89 protein-coding genes, 37 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. A total of 1387 tandem repeats were detected, with the hexanucleotides class making up 28 percent of the repeats. Cordia monoica has 26,303 codons in its protein-coding regions, and leucine amino acid was the most frequently encoded amino acid in contrast to cysteine. In addition, 12 of the 89 protein-coding genes were found to be under positive selection. The phyloplastomic taxonomical clustering of the Boraginaceae species provides further evidence that chloroplast genome data are reliable not only at family level but also in deciphering the phylogeny at genus level (e.g., Cordia).


Subject(s)
Cordia , Genome, Chloroplast , Phylogeny , Codon/genetics , Amino Acids/genetics
2.
PeerJ ; 11: e15320, 2023.
Article in English | MEDLINE | ID: mdl-37250712

ABSTRACT

The use of wild plants is considered to be an eco-friendly and promising natural resource. In sandy desert habitats, Leptadenia pyrotechnica flourishes as a xerophytic shrub with high biomass production. As a dominant shrub in the arid sand dune habitats of Saudi Arabia, Leptadenia pyrotechnica (Forssk.) Decne (Asclepiadaceae) is one of the most common xerophytes; the many medicinal uses of this plant include treating allergies, productive coughs, abortions, diabetes, stomach disorders, fevers, kidney disorders, and stones. In such a distribution, morpho-anatomical characteristics, among other adaptive traits, play an important role. This study aims to characterize some morpho-anatomical adaptations of L. pyrotechnica in two stressful habitats: the hyper-arid inland sand dunes of the Empty Quarter (EQ) and the arid coastal sand dunes of Jazan. A morpho-anatomical analysis of plant stems and roots from both habitats was conducted using light microscopy (LM) and scanning electron microscopy (SEM). The outcomes indicated similar characteristics, a low surface-to-volume ratio (S/V), a thin boundary layer (δbl), an epidermis with many layers of hypodermis, bundles of sclerenchymatous cells around vascular tissue, and storage starch grains in ray parenchyma between xylem conduits. On the other hand, the L. pyrotechnica stem from the hyper-arid habitat of the Empty Quarter revealed more encrypted stomata, more elongated palisade cells, less calcium oxalate crystals with low Ca percentage, and a high vulnerability index of xylem vessels compared with the same traits of the stem from the Jazan coastal sand dunes habitat. Roots of L. pyrotechnica from both habitats revealed similar features of general anatomy. However, differences in specific anatomical traits were observed, especially in xylem vessel characters. The vulnerability index of root xylem vessels from the Empty Quarter habitat was more than that from the Jazan coastal sand dunes habitat. Furthermore, vestured bordered pits in root xylem walls were more abundant in the Empty Quarter habitat than in the Jazan coastal sand dunes habitat. As a result, these characteristics in the morpho-anatomy of L. pyrotechnica from both habitats provide practical adaptations to highly stressful conditions, along with specific anatomical traits relating to each habitat.


Subject(s)
Apocynaceae , Apocynaceae/chemistry , Sand , Saudi Arabia , Ecosystem , Biomass , Plants
3.
Plants (Basel) ; 12(5)2023 Feb 24.
Article in English | MEDLINE | ID: mdl-36903891

ABSTRACT

Lamium amplexicaule L. (Family: Lamiaceae) is a cosmopolitan weed whose eradication is challenging. The phenoplasticity of this species is related to its heteroblastic inflorescence, which has not received adequate research worldwide in its morphological and genetic aspects. This inflorescence hosts two flower types, a cleistogamous (CL: closed flower) and a chasmogamous (CH: opened flower). This species subjected to detailed investigation is a model species to clarify: (1) the existence of the CL and CH flowers in relation to the time and individual plants. (2) the predominant flower morphs in Egypt. (3) the morphological and genetic variability between these morphs. Among the novel data retrieved from this work is the Presence of this species in three distinct morphs coexisting during winter. These morphs showed remarkable phenoplasticity, particularly in flower organs. Significant differences were observed between the three morphs in pollen fertility, nutlets productivity and sculpture, flowering time, and seed viability. These differences were extended to the genetic profile of these three morphs assessed by the inter simple sequence repeats (ISSRs) and start codon targeted (SCoT). This work highlights the urgent need to study the heteroblastic inflorescence of crop weeds to facilitate its eradication.

4.
Plants (Basel) ; 11(20)2022 Oct 19.
Article in English | MEDLINE | ID: mdl-36297799

ABSTRACT

Sustainable agriculture is a prerequisite for food and environmental security. Chemical fertilization, especially nitrogenous fertilization, is considered the most consumed for field crops. In rice crops, plants consume much less than half of the applied N-fertilizer. In the current investigation, multiple N environments were generated by applying different N doses of urea fertilizer to a permanent transplanted field for two successive summer growing seasons at the rice research and training center, Kafrelsheikh, Egypt. A set of 55 genotypes consisting of 25 Jabonica, 4 Tropical Japonica, 20 Indica, and 6 Indica/Japonica were transplanted under no N (0N), Low N (LN), medium N (MN), and High N (HN) (i.e., 0, 48, 96, and 165 Kg N ha-1, respectively). Highly significant differences were detected among the tested genotypes. AMMI analysis of variance revealed the existence of the genotype via nitrogen interaction (GNI) on yield performance. The GNI principal components (IPCA); IPCA1 and IPCA2 scores were significant and contributed values of 71.1 and 21.7%, respectively. The highest-ranked genotypes were MTU1010, IR22, SK2046, SK2058, IR66, and Yabani LuLu based on their grain yield means (30.7, 29.9, 29.5, 29.3, 28.8, and 28.5 g plant-1). These genotypes were grouped into the same subcluster (SCL) according to the stability analysis ranking matrix. Based on AMMI analysis and biplots, MTU1010 and Yabani LuLu showed yield stability across environments. Meanwhile, the which-won-where biplot showed that IR22 was superior under unfavorable N-levels and MTU1010 was stable across the different environments. These findings are considered to be of great importance to breeders for initiating low-nitrogen-input breeding programs for sustainable agriculture.

5.
Front Plant Sci ; 13: 1030772, 2022.
Article in English | MEDLINE | ID: mdl-36726682

ABSTRACT

Trigonella foenum graecum L. (Fenugreek) is a valuable medicinal plant cultivated for decades for its therapeutic characteristics. Still no pronounced improvement concerning wild form was accomplished as it is a self-pollinating crop. Induced mutagenesis is encouraged as a remarkable tool on this plant to circumvent the genetic bottleneck of cultivated germplasms. As a result, novel allelomorphic combinations for short-term agronomic attributes were developed. Fenugreek cultivar Pusa Early Bunching, selected for the present experiment, was mutagenized with five doses (0.2%, 0.4%, 0.6%, 0.8%, and 1.0%) of caffeine and sodium azide (SA) to evaluate its impact on the qualitative and quantitative traits of M1 and M2 generation conducted in a Complete Randomized Block Design (CRBD), replicated five times during 2019-2020 and 2020-2021, respectively. The frequency of induced phenotypic variations was assessed in M2 progenies, resulting in the identification and isolation of a broad spectrum of mutants with altered phenotypes. Mutagenic effectiveness and efficiency were found to be maximum at lower concentrations of the mutagen treatments and highest in SA, followed by caffeine. Various morphological mutants with modified characters were observed at different concentrations in M2 generation. The spectrum of mutations was wider in SA than in caffeine, as caffeine produced 51 while SA produced 54 individual mutants under seven major categories. The maximum frequency of morphological mutants was associated with leaf, followed by plant size, plant growth habit, pod, seed size, seed shape, and seed color. Morphological and structural variations in the guard cells of stomata and seeds were observed through scanning electron microscopy. The variations created in the economically important traits may enrich the genetic diversity of this plant species. Moreover, these morphological mutants may serve as a source of elite genes in further breeding programs of fenugreek.

6.
Saudi J Biol Sci ; 27(1): 35-40, 2020 Jan.
Article in English | MEDLINE | ID: mdl-31889814

ABSTRACT

Riyadh region is one of the hardest habitats in Saudi Arabia with a hyper-arid climate. This study was conducted to investigate floristic composition and plant life forms of Riyadh region and their ecological significance. Work aimed to determine the prevailing plant families and biological spectrum of their components that reflects the phytoclimate and adaptation to hyper-arid conditions of the region. Work involved field surveys of different locations in Riyadh region where plant specimens were collected and identified. Collected plant species were then listed according to their families and data were used to assess the contribution of different plant families to the flora of the region. Study of life forms was conducted to classify recorded floristic elements into categories that reflect environmental conditions prevailing in the region. Prevailing plant families were Asteraceae (17.4%), Poaceae (11%), Brassicaceae (9.9%), and Fabaceae (7%). These percentages reflect wide ecological ranges especially for Asteraceae and Poaceae. High presence of species belonging to Astreaceae and Poaceae can be attributed to their adaptation to harsh conditions as well as to effective wind dispersal strategies of their diaspores. While the most frequent life form classes were therophytes with 52%, and chamaephytes with 30%, phanerophytes and hemicryptophytes represented 9% and 8%, respectively. Predominance of therophytes and chamaephytes over other life forms is a response to hyper arid climate with insufficient rainfall and the nature of region of few available microhabitats that can support high percentage of perennials.

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