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1.
J Biomol Struct Dyn ; 40(14): 6642-6655, 2022 09.
Article in English | MEDLINE | ID: mdl-33594957

ABSTRACT

The structural, spectroscopic and electronic properties of 4-(4-nitrophenyl)-5-(pyridin-3-yl)-2,4-dihydro-3H-1,2,4-triazole-3-thione have been analyzed by using single crystal X-ray diffraction (SCXRD), 1H and 13C NMR chemical shifts and FT-IR spectroscopic methods both theoretically and experimentally. The tautomeric (thiol and thione) energetic analysis results, structural optimization parameters (bond lengths and angles), vibrational wavenumbers, proton and carbon NMR chemical shifts, UV-Vis. parameters, the highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) analyses and Molecular Electrostatic Potential (MEP) surface have been calculated by using DFT/B3LYP quantum chemical method with 6-311++G(2d,2p) basis set to compare with the experimental results. The computed geometry parameters, vibrational wavenumbers, and NMR chemical shifts have been in good agreement with the experimental results. It should be noted that the radical scavenging activities of the title compound have been evaluated by using different test methods i.e. 2,2-Diphenyl-1-picrylhydrazyl (DPPH), N,N-dimethyl-p-phenylenediamine (DMPD) and 2,2'-azino-bis-(3-ethylbenzothiazoline-6-sulfonate) (ABTS). According to obtained results, the title compound displayed DPPH (SC50 19.42 ± 0.11 µg/mL), DMPD (SC50 21.13 ± 0.08 µg/mL) and ABTS (SC50 38.17 ± 0.25 µg/mL) scavenging activities. Also, these results have been compared with Butylated hydroxyanisole (BHA), Rutin (RUT) and Trolox (TRO) used as standard compounds. The physicochemical, pharmacokinetic, and toxicity features of the compound have been determined by using drug-likeness and in silico ADMET investigations. The interaction results with SARS-CoV-2 main protease (Mpro) of the title ligand compound have been analyzed via the help of molecular docking study. Communicated by Ramaswamy H. Sarma.


Subject(s)
Antioxidants , COVID-19 , Antioxidants/pharmacology , Humans , Molecular Docking Simulation , Quantum Theory , SARS-CoV-2 , Spectrophotometry, Ultraviolet , Spectroscopy, Fourier Transform Infrared , Spectrum Analysis, Raman , Thiones , Triazoles/pharmacology
2.
Spectrochim Acta A Mol Biomol Spectrosc ; 136 Pt B: 534-46, 2015 Feb 05.
Article in English | MEDLINE | ID: mdl-25448954

ABSTRACT

We have reported synthesis and characterization of (E)-2-nitro-4-[(phenylimino)methyl]phenol by using X-ray crystallographic method, FT-IR and UV-vis spectroscopies and density functional theory (DFT). Optimized geometry and vibrational frequencies of the title compound in the ground state have been computed by using B3LYP with the 6-311G+(d,p) basis set. HOMO-LUMO energy gap, Non-linear optical properties and NBO analysis of the compound are performed at B3LYP/6-311G+(d,p) level. Additionally, as remarkable properties, antioxidant activity of the title compound (CMPD) has been determined by using different antioxidant test methods i.e. ferric reducing antioxidant power (FRAP), hydrogen peroxide scavenging (HPSA), free radical scavenging (FRSA) and ferrous ion chelating activities (FICA). When compared with standards (BHA, BHT, and α-tocopherol), we have concluded that CPMD has effective FRAP, HPSA, FRSA and FICA.


Subject(s)
Antioxidants/chemistry , Antioxidants/pharmacology , Phenols/chemistry , Phenols/pharmacology , Crystallography, X-Ray , Ferrous Compounds/chemistry , Free Radicals/chemistry , Hydrogen Peroxide/chemistry , Methylation , Models, Molecular , Nitro Compounds/chemistry , Nitro Compounds/pharmacology , Spectroscopy, Fourier Transform Infrared
3.
Spectrochim Acta A Mol Biomol Spectrosc ; 132: 555-62, 2014 Nov 11.
Article in English | MEDLINE | ID: mdl-24892534

ABSTRACT

The title compound, 5-(4-Chlorophenyl)-1-(6-methoxypyridazin-3-yl)-1H-pyrazole-3-carboxylic acid, has been characterized by using elemental analysis, MS, FT-IR, 1H NMR and 13C NMR spectroscopic, and crystallographic techniques. The title compound crystallizes in the triclinic space group P-1 with a=9.612(1), b=9.894(1), c=17.380(1)Å, α=90.213(5)°, ß=104.99(1)°, γ=111.072(5)°, V=1481.3(2)Å3 and Dx=1.483 g cm(-3) respectively. The structure of the compound has also been examined by using quantum chemical methods. The molecular geometry and vibrational frequencies of monomeric and dimeric form of the title compound in the ground state have been calculated by using the B3LYP/6-31G(d,p) level of the theory. The calculated results show that the optimized geometry and the theoretical vibration frequencies of the dimeric form are good agreement with experimental data. In addition, HOMO-LUMO energy gap, molecular electrostatic potential map, thermodynamic properties of the title compound were performed at B3LYP/6-31G(d,p) level of theory.


Subject(s)
Carboxylic Acids/chemistry , Models, Molecular , Quantum Theory , Carboxylic Acids/chemical synthesis , Crystallography, X-Ray , Hardness , Hydrogen Bonding , Magnetic Resonance Spectroscopy , Molecular Conformation , Spectroscopy, Fourier Transform Infrared , Static Electricity , Thermodynamics , Vibration
4.
Spectrochim Acta A Mol Biomol Spectrosc ; 130: 357-66, 2014 Sep 15.
Article in English | MEDLINE | ID: mdl-24810021

ABSTRACT

In this study, (E)-4,6-dibromo-2-[(3,5-dimethylphenylimino)methyl]-3-methoxyphenol and (E)-4,6-dibromo-2-[(2,6-dimethylphenylimino)methyl]-3-methoxyphenol compounds have been synthesized and characterized by using X-ray crystallographic method, FT-IR and Density functional method. The molecular geometry, vibrational frequencies of the title compounds in the ground state have been calculated by using B3LYP with the 6-31G(d,p) basis set. The tautomeric form of the compounds has been demonstrated by using single crystal X-ray method, FT-IR spectrometer and DFT method. In addition, HOMO-LUMO energy gap, molecular electrostatic potential map and NBO analysis of the compounds are performed at B3LYP/6-31G(d,p) level. It may be remarked that the free radical scavenging activities of the title compounds were assessed using DPPH, DMPD+, and ABTS+ assays. The obtained results show that especially compound 2 has effective DPPH (SC50 1.52±0.14 µg/mL), DMPD+ (SC50 1.22±0.21 µg/mL), and ABTS+ (SC50 3.32±0.17 µg/mL) scavenging activities compared with standards (BHA, rutin, and trolox).


Subject(s)
Aniline Compounds/chemistry , Antioxidants/chemistry , Chemistry, Pharmaceutical , Free Radical Scavengers/chemistry , Phenol/chemistry , Schiff Bases/chemistry , Butylated Hydroxyanisole/chemistry , Chromans/chemistry , Crystallography, X-Ray , Hydrogen Bonding , Models, Molecular , Molecular Conformation , Molecular Structure , Rutin/chemistry , Software , Spectroscopy, Fourier Transform Infrared , Static Electricity
5.
Spectrochim Acta A Mol Biomol Spectrosc ; 125: 319-27, 2014 May 05.
Article in English | MEDLINE | ID: mdl-24566110

ABSTRACT

In this study, (E)-4,6-dibromo-3-methoxy-2-[(3-methoxyphenylimino)methyl]phenol has been synthesized and characterized by using X-ray technique and FT-IR experimentally and using B3LYP/6-31G(d,p) and HF/6-31G(d,p) methods theoretically. The intermolecular and intramolecular interactions of the title compound have been determined according to X-ray results. The molecular geometry, vibrational frequencies of the title compound in the ground state have been calculated using the density functional B3LYP and HF method with the 6-31G(d,p) basis set and calculated bond parameters and vibrational frequencies values show good agreement with experimental values. Theoretical and experimental results show that tautomeric form of the structure is phenol-imine form. Besides HOMO-LUMO energy gap, molecular electrostatic potential map were performed at B3LYP/6-31G(d,p) level. It is worthy note of that, the free radical scavenging activities of the title compound were assessed using DPPH˙, DMPD˙(+), and ABTS˙(+) assays. The obtained results show that the title compound has effective DPPH˙ (SC50 2.61±0.09 µg/mL), DMPD˙(+) (SC50 2.82±0.14 µg/mL), and ABTS˙(+) (SC50 4.91±0.18 µg/mL) radical scavenging activities when compared with standard antioxidants (BHA, rutin, and trolox).


Subject(s)
Free Radical Scavengers/chemistry , Imines/chemistry , Models, Molecular , Phenols/chemistry , Quantum Theory , Benzothiazoles/chemistry , Biphenyl Compounds/chemistry , Crystallography, X-Ray , Hydrogen Bonding , Molecular Conformation , Picrates/chemistry , Piperidones/chemistry , Spectroscopy, Fourier Transform Infrared , Static Electricity , Sulfonic Acids/chemistry , Thermodynamics , Vibration
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