ABSTRACT
Fatty acids (FA) have been related to effects on human health, sensory quality and shelf life of dairy products, cow's health and methane emission. However, despite their importance, they are not regularly measured in all dairy herds yet, which can affect the accuracy of estimated breeding values (EBV) for these traits. In this case, an alternative is to use genomic selection. Thus, the aim was to assess the use of genomic information in the genetic evaluation for milk traits in a tropical Holstein population. Monthly records (n = 36,457) of milk FA percentage, daily milk yield and quality traits from 4,203 cows as well as the genotypes of 755 of these cows for 57,368 single nucleotide polymorphisms (SNP) were used. Polygenic and genomic-polygenic models were applied for EBV prediction, and both models were compared through the EBV accuracy calculated from the prediction error and Spearman's correlation among EBV rankings. Prediction accuracy was assessed by using cross-validation. In this case, the accuracy was the correlation between the genomic breeding values (GEBV) obtained as the sum of SNP effects and the EBV obtained in the polygenic model in each validation group. For all traits, the use of the genomic-polygenic model did not alter the animals' ranking, with correlations higher than 0.87. Nevertheless, through this model, the accuracy increased from 1.5% to 6.8% compared to the polygenic model. The correlations between GEBV and EBV varied from 0.52 to 0.68. Therefore, the use of a small group of genotyped cows in the genetic evaluation can increase the accuracy of EBV for milk FA and other traditional milk traits.
Subject(s)
Cattle/genetics , Cattle/metabolism , Fatty Acids/metabolism , Genomics , Milk/metabolism , Tropical Climate , Animals , Breeding , Female , PhenotypeABSTRACT
The growth rate of broilers has triplicated in the last decades. The body weight is used as one of the selection criteria whereas the carcass traits are valuable market requirements. Thus, the meat industry like animals with high weights at slaughter and better carcass traits. However, the genetic relation of carcass traits with several body weights is unknown. Therefore, we established genetic associations among performance and carcass traits in a broiler chicken line and estimated genetic gain and trends. We also evaluated what age of selection would lead to a more efficient indirect selection of carcass traits. The data set with information of weights in different ages and carcass traits of 128,459 chickens was used. The pedigree data used contained 132,442 chickens. Genetic analysis were realized using ASREML® software applied a restricted maximum likelihood method. Heritability estimates ranged from moderate to high, which indicates that these traits can have high selection response. Genetic correlations between performance and carcass traits varied from moderate to high, which indicates the presence of a genetic association whereas genetic trends indicated that direct selection is occurring for body weight at different ages. Theselection at 30 and 38 days should be considered instead of the slaughter weight, as it anticipates selection in around 12 days.
A taxa de crescimento de frangos de corte foi triplicada nas últimas décadas. O peso corporal é utilizado como um dos principais critérios de seleção, enquanto que as características de carcaça são essenciais para o mercado. Assim, a indústria avícola busca animais com pesos altos ao abate e excelentes características de carcaça. Contudo, a associação genética entre as características de carcaça e desempenho é desconhecida. Deste modo, foram estabelecidas associações genéticas entre estas características, além das estimativas do progresso genético e as tendências genéticas para uma linhagem comercial de frango de corte. Avaliou-se a idade ideal para a seleção indireta, visando a melhoraria das características de carcaça. Foram utilizadas informações de pesos em diferentes idades e características de carcaça de 128.459 frangos em diferentes idades ao passo que o pedigree dispunha de 132.442 aves. As análises genéticas foram realizadas por meio do software ASReml®, utilizando o método da máxima verossimilhança restrita, sob o modelo animal. As estimativas de herdabilidade variaram de moderadas a altas, sendo indicativo de que estas características podem ter alta resposta à seleção. As correlações genéticas entre as características de desempenho e carcaça variaram de moderadas a altas, indicando a presença de associação genética, ao passo que as tendências genéticas sugerem que a seleção direta está ocorrendo para o peso corporal em diferentes idades. A seleção nas idades 30 e 38 dias deve ser considerada em vez do peso ao abate, uma vez que antecipa a seleção em um período aproximado de 12 dias.
ABSTRACT
The Holstein and Jersey dairy cattle breeds are among the most prevalent in Brazil. To evaluate differences among the PTAs (predicted transmitting abilities) of these breeds and their lines, data were collected on 385 Holstein bulls and 82 Jersey sires with semen commercially available from nine Brazilian companies. Three different sire lines for each breed were found. The general linear models method was used for the comparison among lines and between breeds. The two most prevalent lines of Holstein breed presented higher average PTAs for milk yield (1,061.04 pounds and 975.32 pounds) and lower PTAs for percentage of milk solids (from -0.05% to -0.0003%) (P 0.05). These results indicate the supply of sires that mostly increase the milk yield in the Brazilian market. The Jersey breed presented a higher inbreeding coefficient (6.62%) than the Holstein breed (5.14%) (P 0.05). Although the Holstein breed presented higher PTAs for milk yield and lower PTAs for percentage of milk solids (P 0.05), the productive life of the Jersey breed (1.17 months) was longer than it was in the Holstein breed (0.40 months) (P 0.05). We identified the existence of an important variability of the available genetic profiles, what allows the Brazilian producers to choose the most adequate semen for their production system. It is necessary to consider the genetic profiles of sires' lines offered for artificial insemination in Brazil to understand and direct the genetic pattern of Brazilian dairy cattle.
As raças de bovinos de leite Holandesa e Jersey estão entre as mais prevalentes no Brasil. Para avaliar as diferenças entre as PTAs (habilidades de transmissão preditas) destas raças e suas linhagens, foram coletadas informações de 385 touros Holandês e 82 touros Jersey disponibilizados por nove empresas comercializadoras de sêmen no Brasil. Três diferentes linhagens de cada raça foram encontradas. O método dos modelos lineares generalizados foi utilizado para a comparação entre linhagens e entre raças. As duas linhagens da raça Holandesa mais prevalentes apresentaram as maiores PTAs médias para produção de leite (1.061,04 libras e 975,32 libras) e as menores PTAs para a porcentagem de sólidos no leite (de -0,05% a -0,0003%) (P 0.05). Estes resultados sugerem a oferta de touros no mercado nacional que são capazes principalmente de aumentar a produção de leite. A raça Jersey apresentou um coeficiente de endogamia mais elevado (6,62%) que o da raça Holandesa (5,14%) (P 0.05). Embora a raça Holandesa tenha apresentado maiores PTAs para produção de leite e as menores PTAs para a porcentagem de sólidos no leite, a vida produtiva da raça Jersey apresentou-se mais longa (1,17 meses) (P 0.05) que a da raça Holandesa (0,40 meses). Houve uma importante variabilidade do material genético disponível, permitindo a escolha do sêmen mais adequado para cada sistema de produção. Faz-se necessário conhecer o perfil genético dos touros disponibilizados para inseminação artificial no Brasil, com vistas ao conhecimento e direcionamento do padrão genético dos bovinos leiteiros no país.