Contact Topology and the Classification of Disclination Lines in Cholesteric Liquid Crystals.

We give a complete topological classification of defect lines in cholesteric liquid crystals using methods from contact topology. By focusing on the role played by the chirality of the material, we demonstrate a fundamental distinction between "tight" and "overtwisted" disclination lines not detected by standard homotopy theory arguments. The classification of overtwisted lines is the same as nematics, however, we show that tight disclinations possess a topological layer number that is conserved as long as the twist is nonvanishing. Finally, we observe that chirality frustrates the escape of removable defect lines, and explain how this frustration underlies the formation of several structures observed in experiments.

Defect loops in three-dimensional active nematics as active multipoles.

We develop a description of defect loops in three-dimensional active nematics based on a multipole expansion of the far-field director and show how this leads to a self-dynamics dependent on the loop's geometric type. The dipole term leads to active stresses that generate a global self-propulsion for splay and bend loops. The quadrupole moment is nonzero only for nonplanar loops and generates a net "active torque," such that defect loops are both self-motile and self-orienting. Our analysis identifies right- and left-handed twist loops as the only force- and torque-free geometries, suggesting a mechanism for generating an excess of twist loops. Finally, we determine the Stokesian flows created by defect loops and describe qualitatively their hydrodynamics.

Layered Chiral Active Matter: Beyond Odd Elasticity.

In equilibrium liquid crystals, chirality leads to a variety of spectacular three-dimensional structures, but chiral and achiral phases with the same broken continuous symmetries have identical long-time, large-scale dynamics. In this Letter, starting from active model H^{*}, the general hydrodynamics of a pseudoscalar in a momentum-conserving fluid, we demonstrate that chirality qualitatively modifies the dynamics of layered liquid crystals in active systems in both two and three dimensions due to an active "odder" elasticity. In three dimensions, we demonstrate that the hydrodynamics of active cholesterics differs fundamentally from smectic-A liquid crystals, unlike their equilibrium counterpart. This distinction can be used to engineer a columnar array of vortices, with an antiferromagnetic vorticity alignment, that can be switched on and off by external strain. A two-dimensional chiral layered state-an array of lines on an incompressible, freestanding film of chiral active fluid with a preferred normal direction-is generically unstable. However, this instability can be tuned in easily realizable experimental settings when the film is either on a substrate or in an ambient fluid.

Geometry of Bend: Singular Lines and Defects in Twist-Bend Nematics.

We describe the geometry of bend distortions in liquid crystals and their fundamental degeneracies, which we call ß lines; these represent a new class of linelike topological defect in twist-bend nematics. We present constructions for smecticlike textures containing screw and edge dislocations and also for vortexlike structures of double twist and Skyrmions. We analyze their local geometry and global structure, showing that their intersection with any surface is twice the Skyrmion number. Finally, we demonstrate how arbitrary knots and links can be created and describe them in terms of merons, giving a geometric perspective on the fractionalization of Skyrmions.

A Björling representation for Jacobi fields on minimal surfaces and soap film instabilities.

We develop a general framework for the description of instabilities on soap films using the Björling representation of minimal surfaces. The construction is naturally geometric and the instability has the interpretation as being specified by its amplitude and transverse gradient along any curve lying in the minimal surface. When the amplitude vanishes, the curve forms part of the boundary to a critically stable domain, while when the gradient vanishes the Jacobi field is maximal along the curve. In the latter case, we show that the Jacobi field is maximally localized if its amplitude is taken to be the lowest eigenfunction of a one-dimensional Schrödinger operator. We present examples for the helicoid, catenoid, circular helicoids and planar Enneper minimal surfaces, and emphasize that the geometric nature of the Björling representation allows direct connection with instabilities observed in soap films.

Three-Dimensional Active Defect Loops.

We describe the flows and morphological dynamics of topological defect lines and loops in three-dimensional active nematics and show, using theory and numerical modeling, that they are governed by the local profile of the orientational order surrounding the defects. Analyzing a continuous span of defect loop profiles, ranging from radial and tangential twist to wedge ±1/2 profiles, we show that the distinct geometries can drive material flow perpendicular or along the local defect loop segment, whose variation around a closed loop can lead to net loop motion, elongation, or compression of shape, or buckling of the loops. We demonstrate a correlation between local curvature and the local orientational profile of the defect loop, indicating dynamic coupling between geometry and topology. To address the general formation of defect loops in three dimensions, we show their creation via bend instability from different initial elastic distortions.

Stable and unstable vortex knots in excitable media.

We study the dynamics of knotted vortices in a bulk excitable medium using the FitzHugh-Nagumo model. From a systematic survey of all knots of at most eight crossings we establish that the generic behavior is of unsteady, irregular dynamics, with prolonged periods of expansion of parts of the vortex. The mechanism for the length expansion is a long-range "wave-slapping" interaction, analogous to that responsible for the annihilation of small vortex rings by larger ones. We also show that there are stable vortex geometries for certain knots; in addition to the unknot, trefoil, and figure-eight knots reported previously, we have found stable examples of the Whitehead link and 6_{2} knot. We give a thorough characterization of their geometry and steady-state motion. For the unknot, trefoil, and figure-eight knots we greatly expand previous evidence that FitzHugh-Nagumo dynamics untangles initially complex geometries while preserving topology.

Woven Nematic Defects, Skyrmions, and the Abelian Sandpile Model.

We show that a fixed set of woven defect lines in a nematic liquid crystal supports a set of nonsingular topological states which can be mapped on to recurrent stable configurations in the Abelian sandpile model or chip-firing game. The physical correspondence between local skyrmion flux and sandpile height is made between the two models. Using a toy model of the elastic energy, we examine the structure of energy minima as a function of topological class and show that the system admits domain wall skyrmion solitons.

Straight round the twist: frustration and chirality in smectics-A.

Frustration is a powerful mechanism in condensed matter systems, driving both order and complexity. In smectics, the frustration between macroscopic chirality and equally spaced layers generates textures characterized by a proliferation of defects. In this article, we study several different ground states of the chiral Landau-de Gennes free energy for a smectic liquid crystal. The standard theory finds the twist grain boundary (TGB) phase to be the ground state for chiral type II smectics. However, for very highly chiral systems, the hierarchical helical nanofilament phase can form and is stable over the TGB.

Hydrodynamic instabilities in active cholesteric liquid crystals.

We describe the basic properties and consequences of introducing active stresses, with principal direction along the local director, in cholesteric liquid crystals. The helical ground state is found to be linearly unstable to extensile stresses, without threshold in the limit of infinite system size, whereas contractile stresses are hydrodynamically screened by the cholesteric elasticity to give a finite threshold. This is confirmed numerically and the non-linear consequences of instability, in both extensile and contractile cases, are studied. We also consider the stresses associated to defects in the cholesteric pitch ([Formula: see text] lines) and show how the geometry near to the defect generates threshold-less flows reminiscent of those for defects in active nematics. At large extensile activity [Formula: see text] lines are spontaneously created and can form steady-state patterns sustained by constant active flows.

Global defect topology in nematic liquid crystals.

We give the global homotopy classification of nematic textures for a general domain with weak anchoring boundary conditions and arbitrary defect set in terms of twisted cohomology, and give an explicit computation for the case of knotted and linked defects in [Formula: see text], showing that the distinct homotopy classes have a 1-1 correspondence with the first homology group of the branched double cover, branched over the disclination loops. We show further that the subset of those classes corresponding to elements of order 2 in this group has representatives that are planar and characterize the obstruction for other classes in terms of merons. The planar textures are a feature of the global defect topology that is not reflected in any local characterization. Finally, we describe how the global classification relates to recent experiments on nematic droplets and how elements of order 4 relate to the presence of τ lines in cholesterics.

Instabilities and Solitons in Minimal Strips.

We show that highly twisted minimal strips can undergo a nonsingular transition, unlike the singular transitions seen in the Möbius strip and the catenoid. If the strip is nonorientable, this transition is topologically frustrated, and the resulting surface contains a helicoidal defect. Through a controlled analytic approximation, the system can be mapped onto a scalar ϕ^{4} theory on a nonorientable line bundle over the circle, where the defect becomes a topologically protected kink soliton or domain wall, thus establishing their existence in minimal surfaces. Demonstrations with soap films confirm these results and show how the position of the defect can be controlled through boundary deformation.

Instability of a Möbius strip minimal surface and a link with systolic geometry.

We describe the first analytically tractable example of an instability of a nonorientable minimal surface under parametric variation of its boundary. A one-parameter family of incomplete Meeks Möbius surfaces is defined and shown to exhibit an instability threshold as the bounding curve is opened up from a double-covering of the circle. Numerical and analytical methods are used to determine the instability threshold by solution of the Jacobi equation on the double covering of the surface. The unstable eigenmode shows excellent qualitative agreement with that found experimentally for a closely related surface. A connection is proposed between systolic geometry and the instability by showing that the shortest noncontractable closed geodesic on the surface (the systolic curve) passes near the maximum of the unstable eigenmode.

Motility of active fluid drops on surfaces.

Drops of active liquid crystal have recently shown the ability to self-propel, which was associated with topological defects in the orientation of active filaments [Sanchez et al., Nature 491, 431 (2013)]. Here, we study the onset and different aspects of motility of a three-dimensional drop of active fluid on a planar surface. We analyze theoretically how motility is affected by orientation profiles with defects of various types and locations, by the shape of the drop, and by surface friction at the substrate. In the scope of a thin drop approximation, we derive exact expressions for the flow in the drop that is generated by a given orientation profile. The flow has a natural decomposition into terms that depend entirely on the geometrical properties of the orientation profile, i.e., its bend and splay, and a term coupling the orientation to the shape of the drop. We find that asymmetric splay or bend generates a directed bulk flow and enables the drop to move, with maximal speeds achieved when the splay or bend is induced by a topological defect in the interior of the drop. In motile drops the direction and speed of self-propulsion is controlled by friction at the substrate.

Knotted defects in nematic liquid crystals.

We show that the number of distinct topological states associated with a given knotted defect, L, in a nematic liquid crystal is equal to the determinant of the link L. We give an interpretation of these states, demonstrate how they may be identified in experiments, and describe the consequences for material behavior and interactions between multiple knots. We show that stable knots can be created in a bulk cholesteric and illustrate the topology by classifying a simulated Hopf link. In addition, we give a topological heuristic for the resolution of strand crossings in defect coarsening processes which allows us to distinguish topological classes of a given link and to make predictions about defect crossings in nematic liquid crystals.

Dynamics of self-threading ring polymers in a gel.

We study the dynamics of ring polymers confined to diffuse in a background gel at low concentrations. We do this in order to probe the inter-play between topology and dynamics in ring polymers. We develop an algorithm that takes into account the possibility that the rings hinder their own motion by passing through themselves, i.e. "self-threading". Our results suggest that the number of self-threadings scales extensively with the length of the rings and that this is substantially independent of the details of the model. The slowing down of the rings' dynamics is found to be related to the fraction of segments that can contribute to the motion. Our results give a novel perspective on the motion of ring polymers in a gel, for which a complete theory is still lacking, and may help us to understand the irreversible trapping of ring polymers in gel electrophoresis experiments.

Threading Dynamics of Ring Polymers in a Gel.

We perform large scale three-dimensional molecular dynamics simulations of unlinked and unknotted ring polymers diffusing through a background gel, here a three-dimensional cubic lattice. Taking advantage of this architecture, we propose a new method to unambiguously identify and quantify inter-ring threadings (penetrations) and to relate these to the dynamics of the ring polymers. We find that both the number and the persistence time of the threadings increase with the length of the chains, ultimately leading to a percolating network of inter-ring penetrations. We discuss the implications of these findings for the possible emergence of a topological jammed state of very long rings.

Knots and nonorientable surfaces in chiral nematics.

Knots and knotted fields enrich physical phenomena ranging from DNA and molecular chemistry to the vortices of fluid flows and textures of ordered media. Liquid crystals provide an ideal setting for exploring such topological phenomena through control of their characteristic defects. The use of colloids in generating defects and knotted configurations in liquid crystals has been demonstrated for spherical and toroidal particles and shows promise for the development of novel photonic devices. Extending this existing work, we describe the full topological implications of colloids representing nonorientable surfaces and use it to construct torus knots and links of type (p,2) around multiply twisted Möbius strips.

Generating the Hopf fibration experimentally in nematic liquid crystals.

The Hopf fibration is an example of a texture: a topologically stable, smooth, global configuration of a field. Here we demonstrate the controlled sculpting of the Hopf fibration in nematic liquid crystals through the control of point defects. We demonstrate how these are related to torons by use of a topological visualization technique derived from the Pontryagin-Thom construction.