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1.
JTO Clin Res Rep ; 5(4): 100648, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38590729

ABSTRACT

Introduction: Interstitial lung disease (ILD) is the most frequent cause of drug-related mortality from EGFR tyrosine kinase inhibitors (TKIs). Yet, for patients with symptomatic osimertinib-induced ILD, the risk of recurrent ILD associated with EGFR TKI rechallenge, either with osimertinib or another TKI, such as erlotinib, is unclear. Methods: Retrospective study of 913 patients who received osimertinib treatment for EGFR mutation-positive NSCLC. Clinical characteristics, ILD treatment history, and subsequent anticancer therapy of patients with symptomatic osimertinib-induced ILD were collated. The primary end point was to compare the incidence of recurrent ILD with osimertinib versus erlotinib rechallenge. Results: Of 913 patients, 35 (3.8%) had symptomatic osimertinib-induced ILD, of which 12 (34%), 15 (43%), and eight (23%) had grade 2, 3 to 4, and 5 ILD, respectively. On ILD recovery, 17 patients had EGFR TKI rechallenge with eight received osimertinib and nine received erlotinib. The risk of recurrent ILD was higher with osimertinib rechallenge than erlotinib (p = 0.0498). Of eight, five (63%) developed recurrent ILD on osimertinib rechallenge, including three patients with fatal outcomes. In contrast, only one of nine patients (11%) treated with erlotinib had recurrent ILD. Median time to second ILD occurrence was 4.7 (range 0.7-12) weeks. Median time-to-treatment failure of patients with erlotinib rechallenge was 13.2 months (95% confidence interval: 8.6-15.0). Conclusions: The risk of recurrent ILD was considerably higher with osimertinib rechallenge than erlotinib. Osimertinib rechallenge should be avoided, whereas erlotinib may be considered in patients with symptomatic osimertinib-induced ILD.

2.
J Anim Sci ; 95(5): 2080-2088, 2017 May.
Article in English | MEDLINE | ID: mdl-28727020

ABSTRACT

Using a previously established model for nutritional acceleration of puberty, beef heifers ( = 48; 1/2 Angus × 1/4 Hereford × 1/4 Brahman) were used in a replicated 2 × 2 factorial design to examine the effects of diet type (high forage [HF] vs. high concentrate [HC]) and rate of BW gain (low gain [LG], 0.45 kg/d, vs. high gain [HG], 0.91 kg/d) on key metabolic hormones and age at puberty. After weaning at 14 ± 1 wk of age, heifers were assigned randomly to be fed HC-HG, HC-LG, HF-HG, or HF-LG ( = 12/group) beginning at 4 mo of age for 14 wk. Heifers were then switched to a common growth diet until puberty. Average daily gain was greater ( < 0.04) during the dietary treatment phase in HG heifers (0.81 ± 0.06 kg/d) than in LG heifers (0.43 ± 0.06 kg/d), and there was no diet type × rate of gain interaction. Puberty was achieved at a younger age (54.5 ± 1.8 wk) in both HG groups than in LG groups (60.2 ± 1.9 wk; < 0.04), but dietary energy source (HC vs. HF) did not influence this variable. Moreover, mean BW at puberty did not differ by diet type or rate of gain during the dietary treatment phase. Nonetheless, heifers fed HC-HG exhibited a striking increase ( < 0.0001) in serum leptin beginning at 26 ± 1 wk of age and remained elevated ( < 0.01) throughout the remainder of the experimental feeding phase compared to all other treatments. However, serum leptin in HC-HG dropped precipitously when heifers were switched to the common growth diet and did not differ from that of other groups thereafter. Overall mean concentrations of serum glucose were greater ( < 0.006) in HG heifers than in LG during the dietary treatment phase, with serum insulin also greater ( < 0.04) in HG than in LG only during weeks 20, 22, and 30. Mean serum IGF-1 was not affected by dietary type or rate of BW gain. We speculate that failure of the marked increase in serum leptin observed in HC-HG heifers during the dietary treatment phase to further accelerate puberty compared to HF-HG occurred because of its abrupt decline at the onset of the common growth phase, thus attenuating the temporal cue for activation of the reproductive neuroendocrine system.


Subject(s)
Animal Feed/analysis , Cattle/physiology , Reproduction , Sexual Maturation , Animal Husbandry , Animal Nutritional Physiological Phenomena , Animals , Cattle/growth & development , Diet/veterinary , Energy Metabolism , Female , Insulin-Like Growth Factor I/analysis , Leptin/blood , Weaning , Weight Gain
3.
Theriogenology ; 81(4): 625-31, 2014 Mar 01.
Article in English | MEDLINE | ID: mdl-24388674

ABSTRACT

Onset of the winter anovulatory period in mares is associated with a marked diminution in adenohypophyseal synthesis and release of LH. Native GnRH, unlike its synthetic agonists, stimulates the synthesis and secretion of LH in mares without pituitary refractoriness. Herein we tested the hypotheses that (1) the average Julian day of pregnancy can be accelerated by up to 2 months in winter anovulatory mares treated continuously with native GnRH beginning on February 1 and (2) mares will sustain luteal function and pregnancy after treatment withdrawal. Forty-two winter anovulatory mares were stratified by age, body condition score, and size of the largest follicle across two locations in a randomized design and assigned to one of three groups (n = 14 per group): (1) CONTROL: untreated, (2) GnRH-14: GnRH delivered subcutaneously in saline at a rate of 100 µg/h for 8 weeks (February 1-March 29) using four consecutive 14-day pumps (Alzet 2ML2), or (3) GnRH-28: GnRH delivered as in (2), but using two 28-day pumps (Alzet 2ML4). On development of a 35-mm follicle and expression of estrus, mares were bred the following day and treated with hCG. Pregnancies were confirmed using transrectal ultrasonography on Days 14, 24, 33, and 45, with blood samples collected to assess luteal function. Mares treated with GnRH (GnRH-14 and GnRH-28) did not differ reproductively in their responses and data were pooled for statistical comparisons. Mares treated with GnRH exhibited marked increases (P ≤ 0.04) in the frequency of development of a 35-mm follicle, submission rate for live cover and/or artificial insemination, ovulation, and pregnancy compared with control mares on treatment Day 56 (March 29). Interval to the first 35-mm follicle was 51.8 ± 4.9 and 19.3 ± 3.5 days (least square mean ± standard error of the mean) for control and GnRH-treated mares, respectively. Interval to pregnancy was 65.3 ± 6.7 and 28.6 ± 4.8 days (least square mean ± standard error of the mean) for control and GnRH-treated mares, respectively, excluding one GnRH-14 mare that failed to become pregnant over four cycles. By the end of the treatment period (March 29), only 21% of control mares were pregnant compared with 79% of GnRH-treated mares. Furthermore, mean serum concentrations of progesterone were similar to (GnRH-28; P = 0.26) or greater than (GnRH-14; P = 0.01) that of control mares from Day 0 to 46 postbreeding. Data illustrate that continuous administration of native GnRH is a highly efficient option for managing seasonal anovulation in mares and could be effectively used in the breeding industry if a user-friendly delivery option were available.


Subject(s)
Anovulation/veterinary , Corpus Luteum/physiology , Gonadotropin-Releasing Hormone/pharmacology , Horses/physiology , Ovarian Follicle/physiology , Animals , Corpus Luteum/diagnostic imaging , Female , Gonadotropin-Releasing Hormone/administration & dosage , Linear Models , Male , North America , Ovarian Follicle/diagnostic imaging , Pregnancy , Progesterone/blood , Random Allocation , Seasons , Ultrasonography
4.
Theriogenology ; 81(4): 579-86, 2014 Mar 01.
Article in English | MEDLINE | ID: mdl-24411221

ABSTRACT

The continuous, subcutaneous infusion of native GnRH into seasonally anovulatory mares stimulates the synthesis and secretion of LH without pituitary refractoriness, offering opportunities to markedly accelerate the timing of ovulation within the operational breeding season. Herein, we tested the hypothesis that ovarian cycles induced in winter anovulatory mares using continuous administration of native GnRH for 28 days, beginning in either early February or early March (North America) would not revert to an anovulatory state after treatment withdrawal. Anovulatory mares received sham pumps (control) or native GnRH (100 µg/h) for 28 days beginning from February 2 or 3 (GnRH-Feb) or March 2 or 3 (GnRH-Mar). Mean concentrations of LH were five- to seven-fold greater during February in the GnRH-Feb group compared with control and GnRH-Mar groups through February and ending on March 2 or 3. However, concentrations of LH returned to the winter baseline within 3 to 11 days after pump removal and all GnRH-Feb mares failed to remain cyclic after treatment withdrawal. Correspondingly, during March, concentrations of LH in the GnRH-Mar group were greater (P < 0.001) than in the control and GnRH-Feb groups during the 28-day treatment period. Follicular growth and frequency of ovulation (6/10 GnRH-Feb; 9/10 GnRH-Mar, 1/11 controls, respectively) were greater (P < 0.01) in GnRH-treated mares. Ovulatory cycles continued in five of nine GnRH-Mar mares that ovulated, with interovulatory intervals of 15 to 24 days; whereas, three of nine mares had extended (33-42 days) interovulatory intervals and one of nine mares had a persistent CL after cessation of treatment. In summary, continuous administration of native GnRH for 28 days, beginning in early February or March, elevated circulating LH adequately to stimulate follicular growth and ovulation up to 60 days earlier than in untreated controls. However, if continuous, subcutaneous infusion of GnRH is selected as the only pharmacologic or managerial intervention, and mares are not pregnant, treatment must be continued at least until the end of March. This will improve the likelihood of a normal interovulatory interval after treatment withdrawal.


Subject(s)
Anestrus/physiology , Gonadotropin-Releasing Hormone/pharmacology , Horses/physiology , Luteinizing Hormone/blood , Ovarian Follicle/physiology , Ovulation Induction/veterinary , Anestrus/drug effects , Animals , Female , Gonadotropin-Releasing Hormone/administration & dosage , North America , Ovarian Follicle/diagnostic imaging , Seasons , Ultrasonography
5.
J Anim Sci ; 90(7): 2222-32, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22266992

ABSTRACT

It was hypothesized that a high-concentrate diet fed during early calfhood alters the expression of genes within the arcuate nucleus that subserve reproductive competence. Beef heifers (n = 12) were weaned at approximately 3 mo of age, and after acclimation, were allocated randomly to 1 of 2 nutritional groups: 1) High Concentrate/High Gain (HC/HG), a high concentrate diet fed to promote a gain of 0.91 kg/d; or 2) High Forage/Low Gain (HF/LG), a forage-based diet fed to promote a gain of 0.45 kg/d. Experimental diets were fed under controlled intake for 91 d. At the end of 91 d, heifers were slaughtered by humane procedures, blood samples were collected, brains were removed, liver weights were determined, and rumen fluid was collected for VFA analyses. Tissue blocks containing the hypothalamus were dissected from the brains, frozen, and cut using a cryostat, and frozen sections were mounted on slides. Tissue from the arcuate nucleus (ARC) was dissected from sections for mRNA extraction. Microarray analysis was used to assess genome-wide transcription in the ARC using a 60-mer oligonucleotide 44K bovine expression array. The ADG was greater (P < 0.001) in heifers fed the HC/HG diet than in heifers fed the HF/LG diet. At slaughter, mean propionate to acetate ratios in the ruminal fluid and liver weight as a percentage of BW were increased (P < 0.005) in HC/HG compared with HF/LG heifers. Mean serum concentrations of insulin (P < 0.05) and IGF-1 (P < 0.005) were greater, and leptin tended to be greater (P = 0.1) in HC/HG heifers compared with HF/LG heifers. Approximately 345 genes were observed to be differentially expressed in the HC/HG group with approximately two-thirds of the genes exhibiting increased expression in the HC/HG group. Genes exhibiting decreased expression in the HC/HG group included agouti-related protein and neuropeptide Y, products of which are known to regulate feed intake and energy expenditure. Functional annotation of enriched Gene Ontology terms indicates that a number of biological processes within the hypothalamus are affected by consumption of high-concentrate diets, including those related to control of feed intake, regulation of cellular metabolic processes, receptor and intracellular signaling, and neuronal communication. In summary, dietary treatments shown previously to accelerate the timing of pubertal onset in heifers increased ruminal propionate, promoted enhanced metabolic hormone secretion, and altered gene expression in the ARC.


Subject(s)
Animal Feed/analysis , Arcuate Nucleus of Hypothalamus/metabolism , Cattle/physiology , Diet/veterinary , Gene Expression Regulation/physiology , Animal Nutritional Physiological Phenomena , Animals , Arcuate Nucleus of Hypothalamus/drug effects , Body Fluids/chemistry , Fatty Acids, Volatile/chemistry , Female , Oligonucleotide Array Sequence Analysis/veterinary , RNA/genetics , RNA/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Rumen , Sexual Maturation
6.
Org Biomol Chem ; 8(5): 1081-90, 2010 Mar 07.
Article in English | MEDLINE | ID: mdl-20165798

ABSTRACT

A series of enantiopure 2,2'-bipyridines have been synthesised from the corresponding cis-dihydrodiol metabolites of 2-chloroquinolines. Several of the resulting hydroxylated 2,2'-bipyridines were found to be useful chiral ligands for the asymmetric aminolysis of meso-epoxides leading to the formation of enantioenriched amino alcohols (-->84% ee). N-oxide and N,N'-dioxide derivatives of these 2,2'-bipyridines, including separable atropisomers, have been synthesised and used as enantioselective organocatalysts in the asymmetric allylation of aldehydes to give allylic alcohols (-->86% ee).


Subject(s)
2,2'-Dipyridyl/chemistry , Oxides/chemistry , Quinolines/metabolism , 2,2'-Dipyridyl/chemical synthesis , Aldehydes/chemistry , Biotransformation , Epoxy Compounds/chemistry , Ligands , Oxides/chemical synthesis , Pseudomonas putida/enzymology , Sphingomonas/enzymology
7.
Phys Rev E Stat Nonlin Soft Matter Phys ; 69(6 Pt 2): 066303, 2004 Jun.
Article in English | MEDLINE | ID: mdl-15244722

ABSTRACT

We first report that, for planar nematic 4-methoxy-benzilidene-4-butylaniline (MBBA), the electroconvection threshold voltage has a nonmonotonic temperature dependence, with a well-defined minimum, and a slope of about -0.12 V/degrees C near room temperature at 70 Hz. Motivated by this observation, we have designed an experiment in which a weak continuous-wave absorbed laser beam with a diameter comparable to the pattern wavelength generates a locally supercritical region, or pulse, in dye-doped MBBA. Working 10-20 % below the laser-free threshold voltage, we observe a steady-state pulse shaped as an ellipse with the semimajor axis oriented parallel to the nematic director, with a typical size of several wavelengths. The pulse is robust, persisting even when spatially extended rolls develop in the surrounding region, and displays rolls that counterpropagate along the director at frequencies of tenths of Hz, with the rolls on the left (right) side of the ellipse moving to the right (left). Systematic measurements of the sample-voltage dependence of the pulse amplitude, spatial extent, and frequency show a saturation or decrease when the control parameter (evaluated at the center of the pulse) approaches approximately 0.3. We propose that the model for these pulses should be based on the theory of control-parameter ramps, supplemented with new terms to account for the advection of heat away from the pulse when the surrounding state becomes linearly unstable. The advection creates a negative feedback between the pulse size and the efficiency of heat transport, which we argue is responsible for the attenuation of the pulse at larger control-parameter values.

8.
Water Environ Res ; 75(4): 342-54, 2003.
Article in English | MEDLINE | ID: mdl-12934828

ABSTRACT

The relative rates of biodegradation and stripping and volatilization of nonspeciated volatile organic compounds (VOCs) in wastewater treated with aerobic activated-sludge processes can be quantified using a newly developed procedure. This method was adapted from the original aerated draft tube reactor test that was developed to measure biodegradation rate constants for specific volatile pollutants of interest. The original batch test has been modified to include solid-phase microextraction (SPME) fibers for sampling in the gas phase. The experimental procedure using SPME fibers does not require specific identification and quantitation of individual pollutants and can be used to evaluate wastewater with multiple VOCs. To illustrate use of this procedure, laboratory experiments were conducted using biomass and wastewater or effluent from three activated-sludge treatment systems. Each experiment consisted of two trials: a stripping-only trial without biomass and a stripping plus biodegradation trial using biomass from the activated-sludge unit of interest. Data from the two trials were used to quantify the rates of biodegradation by difference. The activated-sludge systems tested were a laboratory diffused-air reactor treating refinery wastewater, a full-scale surface aerated reactor treating a petrochemical wastewater, and a full-scale diffused-air reactor treating a variety of industrial effluents. The biodegradation rate constant data from each laboratory batch experiment were used in model calculations to quantify the fraction emitted (fe) and the fraction biodegraded (fbio) for each system. The fe values ranged from a maximum of 0.01 to a maximum of 0.32, whereas fbio values ranged from a minimum of 0.40 to a minimum 0.95. Two of these systems had been previously tested using a more complicated experimental approach, and the current results were in good agreement with previous results. These results indicate that biodegradation rate constant data from this laboratory method can be successfully used to predict the fate of VOCs in field-scale treatment units, and thus could potentially be used for demonstration of compliance with wastewater VOC emission regulations.


Subject(s)
Bioreactors , Models, Theoretical , Organic Chemicals/chemistry , Refuse Disposal/methods , Sewage/chemistry , Biodegradation, Environmental , Filtration , Gas Chromatography-Mass Spectrometry , Kinetics , Volatilization
9.
Appl Environ Microbiol ; 68(12): 6246-55, 2002 Dec.
Article in English | MEDLINE | ID: mdl-12450849

ABSTRACT

A novel haloarchaeal strain, Haloarcula sp. strain D1, grew aerobically on 4-hydroxybenzoic acid (4HBA) as a sole carbon and energy source and is the first member of the domain Archaea reported to do so. Unusually, D1 metabolized 4HBA via gentisic acid rather than via protocatechuic acid, hydroquinone, or catechol. Gentisate was detected in 4HBA-grown cultures, and gentisate 1,2-dioxygenase activity was induced in 4HBA-grown cells. Stoichiometric accumulation of gentisate from 4HBA was demonstrated in 4HBA-grown cell suspensions containing 2,2'-dipyridyl (which strongly inhibits gentisate 1,2-dioxygenase). To establish whether initial 1-hydroxylation of 4HBA with concomitant 1,2-carboxyl group migration to yield gentisate occurred, 2,6-dideutero-4HBA was synthesized and used as a substrate. Deuterated gentisate was recovered from cell suspensions and identified as 3-deutero-gentisate, using gas chromatography-mass spectrometry and proton nuclear magnetic resonance spectroscopy. This structural isomer would be expected only if a 1,2-carboxyl group migration had taken place, and it provides compelling evidence that the 4HBA pathway in Haloarcula sp. strain D1 involves a hydroxylation-induced intramolecular migration. To our knowledge, this is the first report of a pathway which involves such a transformation (called an NIH shift) in the domain Archaea.


Subject(s)
Gentisates , Haloarcula/metabolism , Parabens/metabolism , 2,2'-Dipyridyl/metabolism , Aerobiosis , Biotransformation , Haloarcula/growth & development , Hydroxybenzoates/metabolism , Magnetic Resonance Spectroscopy
10.
Acta Crystallogr C ; 57(Pt 5): 505-7, 2001 May.
Article in English | MEDLINE | ID: mdl-11353229

ABSTRACT

The title compound, K(5)[BW(12)O(40)].16H(2)O, contains a [BW(12)O(40)](5-) polyanion of 222 crystallographic symmetry, with a central tetrahedrally coordinated B(III) atom surrounded by four groups of three edge-sharing octahedra (W(3)O(13) subunits), which are linked in turn to each other and to the central BO(4) tetrahedron by shared O atoms at the vertices. There is a crystallographically unique B-O bond of 1.554 (10) A, while the average W-O distances are 2.344 (17) A for four coordinate O atoms, 1.917 (12) and 1.89 (2) A for two coordinate O atoms within and connecting the W(3)O(13) subunits, respectively, and 1.709 (8) A for terminal O atoms. Not all of the K(+) ions and H(2)O groups were located.

11.
Curr Opin Biotechnol ; 12(6): 564-73, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11849939

ABSTRACT

Aromatic dioxygenases have been found to catalyse single and tandem oxidation reactions of conjugated polyenes. Rational selection and design of dioxygenases, allied to substrate shape, size and substitution pattern, has been used to control regiochemistry and stereochemistry during the oxygenation process. The resulting enantiopure bioproducts have been increasingly utilised as precursors for new and alternative routes in chiral synthesis.


Subject(s)
Biotechnology/methods , Oxygenases/chemistry , Bacterial Proteins/chemistry , Binding Sites , Catalysis , Crystallography, X-Ray , Dioxygenases , Hydroxylation , Models, Chemical , Multienzyme Complexes/chemistry , Oxygen/chemistry , Oxygen/metabolism , Protein Conformation , Substrate Specificity
12.
Astrobiology ; 1(1): 111-23, 2001.
Article in English | MEDLINE | ID: mdl-12448998

ABSTRACT

Defining locations where conditions may have been favorable for life is a key objective for the exploration of Mars. Of prime importance are sites where conditions may have been favorable for the preservation of evidence of prebiotic or biotic processes. Areas displaying significant concentrations of the mineral hematite (alpha-Fe2O3), recently identified by thermal emission spectrometry, may have significance in the search for evidence of extraterrestrial life. Since iron oxides can form as aqueous mineral precipitates, the potential exists to preserve microscopic evidence of life in iron oxide-depositing ecosystems. Terrestrial hematite deposits proposed as possible analogs for hematite deposits on Mars include massive (banded) iron formations, iron oxide hydrothermal deposits, iron-rich laterites and ferricrete soils, and rock varnish. We report the potential for long-term preservation of microfossils by iron oxide mineralization in specimens of the approximately 2,100-Ma banded iron deposit of the Gunflint Formation, Canada. Scanning and analytical electron microscopy reveals micrometer-scale rods, spheres, and filaments consisting predominantly of iron and oxygen with minor carbon. We interpret these objects as microbial cells permineralized by an iron oxide, presumably hematite. The confirmation of ancient martian microbial life in hematite deposits will require the return of samples to terrestrial laboratories. A hematite-rich deposit composed of aqueous iron oxide precipitates may thus prove to be a prime site for future sample return.


Subject(s)
Exobiology/methods , Extraterrestrial Environment , Ferric Compounds/analysis , Fossils , Mars , Minerals/analysis , Bacterial Physiological Phenomena , Life
13.
FEMS Microbiol Lett ; 182(2): 327-31, 2000 Jan 15.
Article in English | MEDLINE | ID: mdl-10620687

ABSTRACT

Rhodococcus sp. NCIMB112038 can utilize naphthalene as its sole carbon and energy source. The gene encoding cis-naphthalene dihydrodiol dehydrogenase (narB) of this strain has been cloned and sequenced. Expression of NCIMB12038 cis-naphthalene dihydrodiol dehydrogenase was demonstrated in Escherichia coli cells. narB encodes a putative protein of 271 amino acids and shares 39% amino acid identity with the cis-naphthalene dihydrodiol dehydrogenase from Pseudomonas putida G7. Comparison of NarB with some putative cis-dihydrodiol dehydrogenases from Rhodococcus species revealed significant differences between these proteins. NarB together with two other proteins forms a new group of cis-dihydrodiol dehydrogenases.


Subject(s)
Alcohol Oxidoreductases/genetics , Alcohol Oxidoreductases/metabolism , Naphthalenes/metabolism , Oxidoreductases Acting on CH-CH Group Donors , Oxidoreductases , Rhodococcus/enzymology , Rhodococcus/genetics , Alcohol Oxidoreductases/chemistry , Amino Acid Sequence , Biodegradation, Environmental , Cell Fractionation , Cloning, Molecular , Culture Media , Genes, Bacterial , Molecular Sequence Data , Phylogeny , Rhodococcus/growth & development , Sequence Alignment , Sequence Analysis, DNA
14.
Icarus ; 147(1): 49-67, 2000 Sep.
Article in English | MEDLINE | ID: mdl-11543582

ABSTRACT

Physical evidence of life (physical biomarkers) from the deposits of carbonate hot springs were documented at the scale of microorganisms--submillimeter to submicrometer. The four moderate-temperature (57 to 72 degrees C), neutral pH springs reported on in this study, support diverse communities of bacteria adapted to specific physical and chemical conditions. Some of the microbes coexist with travertine deposits in endolithic communities. In other cases, the microbes are rapidly coated and destroyed by precipitates but leave distinctive mineral fabrics. Some microbes adapted to carbonate hot springs produce an extracellular polymeric substance which forms a three-dimensional matrix with living cells and cell remains, known as a biofilm. Silicon and iron oxides often coat the biofilm, leading to long-term preservation. Submicrometer mineralized spheres composed of calcium fluoride or silica are common in carbonate hot spring deposits. Sphere formation is biologically mediated, but the spheres themselves are apparently not fossils or microbes. Additionally, some microbes selectively weather mineral surfaces in distinctive patterns. Hot spring deposits have been cited as prime locations for exobiological exploration of Mars. The presence of preserved microscopic physical biomarkers at all four sites supports a strategy of searching for evidence of life in hot spring deposits on Mars.


Subject(s)
Carbonates/analysis , Exobiology , Fresh Water/microbiology , Hot Temperature , Mars , Arkansas , Biofilms , Biomarkers , Cyanobacteria , Fresh Water/chemistry , Italy , Microscopy, Electron , Microscopy, Electron, Scanning , New Mexico , Thermus , Water Microbiology , Wyoming
15.
J Bacteriol ; 181(19): 6200-4, 1999 Oct.
Article in English | MEDLINE | ID: mdl-10498739

ABSTRACT

We report here the characterization of the catalytic component (ISP(NAR)) of a new naphthalene dioxygenase from Rhodococcus sp. strain NCIMB12038. The genes encoding the two subunits of ISP(NAR) are not homologous to their previously characterized counterparts in Pseudomonas. The deduced amino acid sequences have only 33 and 29% identity with the corresponding subunits in Pseudomonas putida NCIB 9816-4, for which the tertiary structure has been reported.


Subject(s)
Electron Transport Complex III , Iron-Sulfur Proteins/genetics , Multienzyme Complexes/genetics , Oxygenases/genetics , Rhodococcus/genetics , Amino Acid Sequence , Conserved Sequence , Dioxygenases , Molecular Sequence Data , Rhodococcus/enzymology , Sequence Homology, Amino Acid
16.
Appl Environ Microbiol ; 65(3): 1335-9, 1999 Mar.
Article in English | MEDLINE | ID: mdl-10049904

ABSTRACT

The biotransformation of the polycyclic aromatic hydrocarbons (PAHs) naphthalene and phenanthrene was investigated by using two dioxygenase-expressing bacteria, Pseudomonas sp. strain 9816/11 and Sphingomonas yanoikuyae B8/36, under conditions which facilitate mass-transfer limited substrate oxidation. Both of these strains are mutants that accumulate cis-dihydrodiol metabolites under the reaction conditions used. The effects of the nonpolar solvent 2,2,4, 4,6,8,8-heptamethylnonane (HMN) and the nonionic surfactant Triton X-100 on the rate of accumulation of these metabolites were determined. HMN increased the rate of accumulation of metabolites for both microorganisms, with both substrates. The enhancement effect was most noticeable with phenanthrene, which has a lower aqueous solubility than naphthalene. Triton X-100 increased the rate of oxidation of the PAHs with strain 9816/11 with the effect being most noticeable when phenanthrene was used as a substrate. However, the surfactant inhibited the biotransformation of both naphthalene and phenanthrene with strain B8/36 under the same conditions. The observation that a nonionic surfactant could have such contrasting effects on PAH oxidation by different bacteria, which are known to be important for the degradation of these compounds in the environment, may explain why previous research on the application of the surfactants to PAH bioremediation has yielded inconclusive results. The surfactant inhibited growth of the wild-type strain S. yanoikuyae B1 on aromatic compounds but did not inhibit B8/36 dioxygenase enzyme activity in vitro.


Subject(s)
Gram-Negative Aerobic Rods and Cocci/metabolism , Hydrocarbons, Aromatic/metabolism , Pseudomonas/metabolism , Soil Microbiology , Surface-Active Agents/pharmacology , Biodegradation, Environmental , Gram-Negative Aerobic Rods and Cocci/enzymology , Naphthalenes/metabolism , Octoxynol/pharmacology , Oxygenases/metabolism , Phenanthrenes/metabolism , Pseudomonas/enzymology , Pseudomonas/growth & development
17.
Assessment ; 6(1): 43-50, 1999 Mar.
Article in English | MEDLINE | ID: mdl-9971882

ABSTRACT

The factorial validity of the Ruff-Light Trail Learning Test (RULIT) was evaluated for its specificity as a test of visuospatial learning and memory. In a sample of 307 normal adults, principal components analyses (PCAs) were calculated on scores from the RULIT and selected neuropsychological tests. The PCAs revealed visuospatial learning and memory components, which included RULIT scores that were empirically distinct from verbal learning and memory components. These results provide support for the RULIT as a measure of visuospatial learning and memory.


Subject(s)
Trail Making Test/standards , Adolescent , Adult , Age Factors , Aged , Educational Status , Factor Analysis, Statistical , Female , Humans , Learning , Male , Memory , Middle Aged , Psychometrics , Reproducibility of Results , Sensitivity and Specificity , Sex Factors , Time Factors
18.
Geology ; 26(11): 1031-4, 1998 Nov.
Article in English | MEDLINE | ID: mdl-11541429

ABSTRACT

To explore the formation and preservation of biogenic features in igneous rocks, we have examined the organisms in experimental basaltic microcosms using scanning and transmission electron microscopy. Four types of microorganisms were recognized on the basis of size, morphology, and chemical composition. Some of the organisms mineralized rapidly, whereas others show no evidence of mineralization. Many mineralized cells are hollow and do not contain evidence of microstructure. Filaments, either attached or no longer attached to organisms, are common. Unattached filaments are mineralized and are most likely bacterial appendages (e.g., prosthecae). Features similar in size and morphology to unattached, mineralized filaments are recognized in martian meteorite ALH84001.


Subject(s)
Geologic Sediments/microbiology , Mars , Meteoroids , Minerals/chemistry , Silicates/chemistry , Biofilms , Environmental Microbiology , Exobiology , Fossils , Geologic Sediments/chemistry , Microscopy, Electron , Microscopy, Electron, Scanning , Minerals/analysis , Silicates/analysis
19.
FEMS Microbiol Lett ; 145(2): 227-31, 1996 Dec 01.
Article in English | MEDLINE | ID: mdl-8961560

ABSTRACT

Rhodococcus rhodochrous NCIMB13064 can dehalogenate and utilise a number of halogenated aliphatic compounds as sole carbon and energy source. Mutants of NCIMB13064 can be easily isolated with an enlarged range of 1-chloroalkane utilising ability. Dehalogenation of 1-chlorononane, 1-chlorodecane and short-chain 1-chloroalkanes (C3-C8) is encoded by the same plasmid pRTL1. However, a different genetic element(s) is required for the dehalogenation of 3-chloropropionic acid. Two derivatives (P200 and P400) of R. rhodochrous NCIMB13064 were isolated which had acquired the ability to utilise naphthalene as sole carbon and energy source. Both strains lost the ability to utilise short-chain 1-chloroalkanes and underwent some rearrangements associated with pRTL1 plasmid.


Subject(s)
Hydrocarbons, Chlorinated/metabolism , Naphthalenes/metabolism , Rhodococcus/isolation & purification , Rhodococcus/metabolism , Soil Microbiology , Pyruvic Acid/metabolism
20.
Arch Clin Neuropsychol ; 9(1): 41-55, 1994 Jan.
Article in English | MEDLINE | ID: mdl-14589511

ABSTRACT

Based on an experimental study, Jones-Gotman and Milner demonstrated that patients with right frontal lobe lesions were impaired on design fluency. We sought a clinical adaptation and developed a psychometrically sound technique for design fluency. The present study explores the validity of the Ruff Figural Fluency Test (RFFT) in discriminating patients with either right frontal or nonright frontal lobe lesions. In the first of two studies, six subjects with circumscribed focal lesions were given the RFFT and the Jones-Gotman and Milner figural fluency task. In the second study, we identified a larger sample of 30 patients with focal lesions in the right frontal, left frontal, right posterior, or left posterior cortex. The results from both studies support the validity of the RFFT as a measure which is sensitive to right anterior dysfunction.

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