Metagenomic analysis of ethylene glycol contamination in anaerobic digestion.

Anaerobic digestion is an established method for the biological conversion of waste feedstocks to biogas and biomethane. While anaerobic digestion is an excellent waste management technique, it can be susceptible to toxins and pollutants from contaminated feedstocks, which may have a detrimental impact on a digester's efficiency and productivity. Ethylene glycol (EG) is readily used in the heat-transfer loops of anaerobic digestion facilities to maintain reactor temperature. Failure of the structural integrity of these heat transfer loops can cause EG to leak into the digester, potentially causing a decrease in the resultant gas yields. Batch fermentations were incubated with 0, 10, 100 and 500 ppm (parts per million) of EG, and analysis showed that the EG was completely metabolised by the digester microbiome. The concentrations of EG tested showed significant increases in gas yields, however there were no significant changes to the digester microbiome.

Biostimulant Potential of Acetic Acid Under Drought Stress Is Confounded by pH-Dependent Root Growth Inhibition.

Recent reports of acetic acid-induced drought tolerance and avoidance across a diverse range of plant species encourage consideration of this low-cost commodity organic acid as a biostimulant. These results are surprising as they contrast with earlier studies showing pH-dependent root growth inhibition at similar concentrations. We test the hypothesis that the concentration of the membrane permeable undissociated form of acetic acid (CH3COOH) selectively inhibits maize root growth, and subsequently evaluate its impact on seedling water use and growth under deficit irrigation. We demonstrate conclusively for the first time that when germinating maize on filter paper, low pH exacerbates, and high pH mitigates, this inhibition of root growth in a predictable manner based on the dissociation constant of acetic acid. The buffering capacity of potting media can reduce this root damage through keeping the acetic acid primarily in the membrane impermeable dissociated form (CH3COO-) at near neutral pH, but peat substrates appear to offer some protection, even at low pH. While both deficit irrigation and acetic acid reduced water use and growth of maize seedlings outdoors, there was no significant interaction between the treatments. Twenty nine millimolar total acetic acid (CH3COOH + CH3COO-) reduced transpiration, compared to lower and higher concentrations, but this did not specifically improve performance under reduced water availability, with parallel declines in shoot biomass leading to relatively consistent water use efficiency. Any acetic acid biostimulant claims under water stress should characterize its dissociation level, and exclude root damage as a primary cause.

Dynamic bacterial and fungal microbiomes during sweet sorghum ensiling impact bioethanol production.

Significant low-cost biofuel production volumes could be achieved from commercial-scale silage by redirecting lactic acid fermentation to ethanol production. A temporal metagenomic analysis on ensiled sweet sorghum inoculated with an ethanologenic yeast has been conducted to understand the underlying microbial processes during bioethanol production. Individual silage buckets approximating silage piles were prepared with freshly harvested material and supplemented with ethanologenic yeast, sulfuric acid or both. The ensiling progress was assessed using high performance liquid chromatography, microbial taxonomic identification and abundance. The combined treatment with Saccharomyces and acid led to a steady reduction of bacterial abundance and microbial diversity with Lactobacillus becoming the dominant genus during the late timepoints. Furthermore, the addition of acid to inhibit bacterial growth hindered Saccharomyces ability to compete with native yeasts like Candida. Knowledge of the response of the in-situ microbial community to the various treatments during ensiling will help improve current methodologies for bioethanol production.

Nitrogen Reserve Pools in Two Miscanthus × giganteus Genotypes under Contrasting N Managements.

Nitrogen (N) reserves in vegetative tissues contribute N to regrowth of Miscanthus × giganteus shoots in spring, but our understanding of how N fertilization and plant genotype affect this process is incomplete. Our specific objectives were to: (1) determine how N fertilizer management impacts accumulation of dry matter and N among aboveground and belowground tissues and organs; (2) understand how changes in N management and tissue N concentration influence seasonal fluctuations in concentrations of buffer-soluble proteins and amino acids in putative storage organs including rhizomes and roots; and (3) characterize genotypic variability and genotype × N interactions for N reserve accumulation and use among Miscanthus × giganteus genotypes. Established plots of the IL Clone and Nagara-sib population were fertilized with 0-0, 0-150, 75-75, 150-0, and 150-150 kg N ha-1 where the first numeral denotes the N rate applied in 2011 (Year 1) and the second number denotes the N rate applied in 2012 (Year 2). Rhizomes, roots, stembases, and shoots were sampled at 6-week intervals between March and August and then in November at dormancy. Concentrations of N, soluble protein and amino-N increased in all tissues with fertilizer N application. With the exception of rhizome amino-N, concentrations of these N pools in roots and rhizomes declined as plants resumed growth in spring and increased sharply between August and November as growth slowed. Losses in shoot and stembase N mass between August and November were similar to total N accumulation in roots and rhizomes during this interval. Compared to the unfertilized control, specific N managements enhanced growth of above- and belowground tissues. The IL Clone generally had greater biomass yield of all organs than the Nagara-sib; the exception being shoot biomass in November when extensive leaf senescence reduce yield of the IL Clone. High biomass yields were obtained with 75 kg N ha-1 applied annually rather than semi-annual N applications of 150 kg N-1 ha that depended on N recycling from roots/rhizomes as a supplemental N source.

Control of nitrate reductase by circadian and diurnal rhythms in tomato.

Nitrate reductase (NR, EC 1.6.6.1) is a key regulatory enzyme in the assimilation of nitrate into amino acids in plant leaves. NR activity is intricately controlled by multifarious regulatory mechanisms acting at different levels ranging from transcription to protein degradation. It is among the few enzymes known to have a robust circadian rhythm of enzyme activity in many plant species. Although many aspects of NR regulation have been studied in depth, how these different types of control interact in a plant to deliver integrated control of activity in leaves over the course of the day has not been systematically investigated. This work documents that NR in young tomato (Lycopersicon esculentum Mill.) leaves has an endogenous rhythm in mRNA and protein level, which in nearly all circumstances are in phase with the rhythm in NR enzyme activity. Our data show that the diurnal control of NR activity in tomato leaves rests primarily with circadian regulation of Nia gene expression. The accompanying oscillations in protein level in tomato are made possible by a short half-life of NR protein that is approx. 6 h under normal conditions and approx. 2.5 h when plants are darkened during mid-day. NR post-transcriptional regulation via phosphorylation and subsequent 14-3-3 protein binding has a physiologically vital but secondary regulatory role in tomato of rapidly deactivating NR in response to changes in light intensity that cannot be anticipated by circadian timing. The post-translational reactivation of phosphorylated NR appears to have its primary physiological role in tomato leaves in reversing the down regulation of NR following transient shading events. Although there is a significant steady-state pool of apparently inactive NR throughout the diurnal, our data indicate that tomato leaves are unable to draw on this reserve to compensate for NR protein that is degraded during shading.

Chill-induced inhibition of photosynthesis: genotypic variation within Cucumis sativus.

Cucumber is generally a thermophilic species; however, cultivars have been selected for higher yield during winter cultivation in unheated glasshouses in temperate regions. We tested whether photosynthesis in these varieties had greater chilling tolerance. There was no difference in the instantaneous reduction of photosynthesis at low temperature between four winter glasshouse and four summer field cultivars. After 5 d of 10 degrees C and 100 micro mol m(-2) s(-1) photon flux density, the four field cultivars had a sustained depression of photosynthesis after returning to clement conditions. This inhibition was associated with reduced rates of CO(2) fixation and photosystem II (PSII) electron transport in the light, but not with sustained PSII photoinhibition. However, photosynthesis in the glasshouse genotypes was nearly identical to the pre-chill rates. Chill impacts on light-adapted chlorophyll fluorescence parameters, such as the quantum yield of PSII electron transport (phi(PSII)), correlated well with overall photosynthesis. This demonstrates the potential for using these fast and non-invasive techniques to screen for chill-tolerant genotypes, with the potential to further improve winter cucumber yield in unheated glasshouses.