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1.
IDCases ; 32: e01804, 2023.
Article in English | MEDLINE | ID: mdl-37250378
2.
Open Forum Infect Dis ; 9(7): ofac321, 2022 Jul.
Article in English | MEDLINE | ID: mdl-35899277

ABSTRACT

Hypervirulent Klebsiella pneumoniae (hvKp) causes invasive infections in the community setting. We report a rare case of uterine abscess due to hvKp, which appeared as a large-sized ovarian tumor-like pelvic mass. A timely laboratory warning of possible hvKp prompted correct diagnosis and helped guide perioperative decision making, contributing to successful treatment.

3.
Emerg Infect Dis ; 27(8): 2215-2218, 2021.
Article in English | MEDLINE | ID: mdl-34287130

ABSTRACT

We describe a case of endogenous endophthalmitis caused by sequence type 66-K2 hypervirulent Klebsiella pneumoniae in a diabetic patient with no travel history outside the United States. Genomic analysis showed the pathogen has remained highly conserved, retaining >98% genetic similarity to the original strain described in Indonesia in 1935.


Subject(s)
Endophthalmitis , Klebsiella Infections , Endophthalmitis/diagnosis , Endophthalmitis/epidemiology , Humans , Indonesia , Klebsiella Infections/diagnosis , Klebsiella pneumoniae/genetics , United States/epidemiology , Virulence Factors
4.
N Engl J Med ; 380(24): 2327-2340, 2019 06 13.
Article in English | MEDLINE | ID: mdl-31189036

ABSTRACT

BACKGROUND: Metagenomic next-generation sequencing (NGS) of cerebrospinal fluid (CSF) has the potential to identify a broad range of pathogens in a single test. METHODS: In a 1-year, multicenter, prospective study, we investigated the usefulness of metagenomic NGS of CSF for the diagnosis of infectious meningitis and encephalitis in hospitalized patients. All positive tests for pathogens on metagenomic NGS were confirmed by orthogonal laboratory testing. Physician feedback was elicited by teleconferences with a clinical microbial sequencing board and by surveys. Clinical effect was evaluated by retrospective chart review. RESULTS: We enrolled 204 pediatric and adult patients at eight hospitals. Patients were severely ill: 48.5% had been admitted to the intensive care unit, and the 30-day mortality among all study patients was 11.3%. A total of 58 infections of the nervous system were diagnosed in 57 patients (27.9%). Among these 58 infections, metagenomic NGS identified 13 (22%) that were not identified by clinical testing at the source hospital. Among the remaining 45 infections (78%), metagenomic NGS made concurrent diagnoses in 19. Of the 26 infections not identified by metagenomic NGS, 11 were diagnosed by serologic testing only, 7 were diagnosed from tissue samples other than CSF, and 8 were negative on metagenomic NGS owing to low titers of pathogens in CSF. A total of 8 of 13 diagnoses made solely by metagenomic NGS had a likely clinical effect, with 7 of 13 guiding treatment. CONCLUSIONS: Routine microbiologic testing is often insufficient to detect all neuroinvasive pathogens. In this study, metagenomic NGS of CSF obtained from patients with meningitis or encephalitis improved diagnosis of neurologic infections and provided actionable information in some cases. (Funded by the National Institutes of Health and others; PDAID ClinicalTrials.gov number, NCT02910037.).


Subject(s)
Cerebrospinal Fluid/microbiology , Encephalitis/microbiology , Genome, Microbial , Meningitis/microbiology , Metagenomics , Adolescent , Adult , Cerebrospinal Fluid/virology , Child , Child, Preschool , Encephalitis/diagnosis , Female , High-Throughput Nucleotide Sequencing , Humans , Infant , Infections/diagnosis , Length of Stay , Male , Meningitis/diagnosis , Meningoencephalitis/diagnosis , Meningoencephalitis/microbiology , Middle Aged , Myelitis/diagnosis , Myelitis/microbiology , Prospective Studies , Sequence Analysis, DNA , Sequence Analysis, RNA , Young Adult
5.
Transplantation ; 100(11): 2424-2431, 2016 Nov.
Article in English | MEDLINE | ID: mdl-27467538

ABSTRACT

BACKGROUND: Community-acquired respiratory virus (CARV) infections occur frequently after lung transplantation and may adversely impact outcomes. We hypothesized that while asymptomatic carriage would not increase the risk of chronic lung allograft dysfunction (CLAD) and graft loss, severe infection would. METHODS: All lung transplant cases between January 2000 and July 2013 performed at our center were reviewed for respiratory viral samples. Each isolation of virus was classified according to clinical level of severity: asymptomatic, symptomatic without pneumonia, and viral pneumonia. Multivariate Cox modeling was used to assess the impact of CARV isolation on progression to CLAD and graft loss. RESULTS: Four thousand four hundred eight specimens were collected from 563 total patients, with 139 patients producing 324 virus-positive specimens in 245 episodes of CARV infection. Overall, the risk of CLAD was elevated by viral infection (hazard ratio [HR], 1.64; P < 0.01). This risk, however, was due to viral pneumonia alone (HR, 3.94; P < 0.01), without significant impact from symptomatic viral infection (HR, 0.97; P = 0.94) nor from asymptomatic viral infection (HR, 0.99; P = 0.98). The risk of graft loss was not increased by asymptomatic CARV infection (HR, 0.74; P = 0.37) nor symptomatic CARV infection (HR, 1.39; P = 0.41). Viral pneumonia did, however, significantly increase the risk of graft loss (HR, 2.78; P < 0.01). CONCLUSIONS: With respect to CARV, only viral pneumonia increased the risk of both CLAD and graft loss after lung transplantation. In the absence of pneumonia, respiratory viruses had no impact on measured outcomes.


Subject(s)
Graft Rejection/etiology , Lung Transplantation/adverse effects , Pneumonia, Viral/complications , Adult , Aged , Allografts , Chronic Disease , Community-Acquired Infections/complications , Female , Humans , Male , Middle Aged , Proportional Hazards Models
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