Investigation of water-soil-plant relationships based on hazardous and macro-micro element concentrations on Orontes River, Türkiye.

Arundo donax and Phragmites australis were examined in 4 different periods (June and October for 2 years), heavy metal and mineral element accumulations in plants were evaluated, and water-soil-plant relationships were revealed. Element distributions, bioaccumulation factors (BAF) and translocation factors (TF) in different parts of the investigated plant species were also determined. BAFs of elements calculated by using the concentration values in underground parts and sediment samples were between 1.02 and 4.96. While the highest TF was determined as 8.07 for Zn between washed leaf and stem in A. donax, the lowest TF was determined as 0.05 for Fe between stem and underground part. Corresponding highest and lowest TFs for P. australis were 11.80 for Cu between washed leaf and stem, and 0.02 for Fe between stem and underground part, respectively. The results were supported by MANOVA statistical analyzes. Additionally, the macro-micro elements and heavy metal accumulation levels in the parts of the Orontes River ecosystem were significantly higher in the fall periods compared to the spring periods. Our research revealed that the versatile accumulation properties and high accumulation ability of A. donax for Cd, Cr, and Ni and of P. australis for Cd, Co, Cu, Ni, Pb, and Zn.

The Orontes River passes through the regions of three different countries with high population density and developed economies. This study presents the current state of the relationship between the element types and their concentrations in the sediments in the Orontes River ecosystem and the ecophysiological parameters of the river. In this study, the focus was on the Türkiye-Hatay region of the Orontes River, the water-soil-plant relationship in this region was revealed in detail, and valuable data were compiled for researchers who will conduct research on the river ecophysiology.

Arsenic and Human Health: Genotoxicity, Epigenomic Effects, and Cancer Signaling.

Arsenic is a well-known element because of its toxicity. Humans as well as plants and animals are negatively affected by its exposure. Some countries suffer from high levels of arsenic in their tap water and soils, which is considered a primary arsenic-linked risk factor for living beings. Humans generally get exposed to arsenic by contaminated drinking waters, resulting in many health problems, ranging from cancer to skin diseases. On the other hand, the FDA-certified drug arsenic trioxide provides solutions for various diseases, including several types of cancers. This issue emphasizes the importance of speciation of the metalloid elements in terms of impacts on health. When species get exposed to arsenic, it affects the cells altering their involvement. It can lead to abnormalities in inflammatory mechanisms and the immune system which contribute to the negative impacts generated on the body. The poisoning originating from arsenic gives rise to various biological signs on the body which can be useful for the diagnosis. It is important to find true biomarkers for the detection of arsenic poisoning. In view of its application in medicine and biology, studies on understanding the biological activity of arsenic have increased. In this review, we aim at summarizing the current state of knowledge of arsenic and the mechanism behind its toxicity including genotoxicity, oxidative insults, epigenomic changes, and alterations in cellular signaling.

Molecular Biology of Cadmium Toxicity in Saccharomyces cerevisiae.

Cadmium (Cd) is a toxic heavy metal mainly originating from industrial activities and causes environmental pollution. To better understand its toxicity and pollution remediation, we must understand the effects of Cd on living beings. Saccharomyces cerevisiae (budding yeast) is an eukaryotic unicellular model organism. It has provided much scientific knowledge about cellular and molecular biology in addition to its economic benefits. Effects associated with copper and zinc, sulfur and selenium metabolism, calcium (Ca2+) balance/signaling, and structure of phospholipids as a result of exposure to cadmium have been evaluated. In yeast as a result of cadmium stress, "mitogen-activated protein kinase," "high osmolarity glycerol," and "cell wall integrity" pathways have been reported to activate different signaling pathways. In addition, abnormalities and changes in protein structure, ribosomes, cell cycle disruption, and reactive oxygen species (ROS) following cadmium cytotoxicity have also been detailed. Moreover, the key OLE1 gene that encodes for delta-9 FA desaturase in relation to cadmium toxicity has been discussed in more detail. Keeping all these studies in mind, an attempt has been made to evaluate published cellular and molecular toxicity data related to Cd stress, and specifically published on S. cerevisiae.

Molecular and ecological investigations on the wild populations of Glycyrrhiza L. taxa distributed in the East Mediterranean Area of Turkey.

This paper covers studies on the molecular and ecological aspects of G. glabra var. glandulifera, G. flavescens ssp. flavescens and G. echinata collected from Hatay (Turkey); with the aim to better understand their genetic variation and ecological requirements for possible conservation programs. The material including total genomic DNA was extracted by the CTAB, and for PCR reaction, a total of 14 SSR primers developed for Medicago truncatula were used. PCR amplifications were performed in a Multigen® Thermal Cycler. Soil samples were analysed for their texture, pH, total soluble salts, calcium carbonate, total N content, total phosphorus and organic matter content. In order to see the association between genetic, ecological and geographical data, a similarity matrix was generated. Genetic similarity distances between genotypes were correlated with those of Eucledian distances obtained from ecological and geographical data. Analysis of molecular variance (AMOVA) was performed using GenAlEx 6.5 software to determine variation among and within genetic variations. The genetic analysis showed that the highest expected heterozygosity values were obtained from G. glabra while the lowest were obtained from G. echinata. In general heterozygosity values were low, especially for G. echinata. Therefore, variation appears to be lower within each species than among three species. The physical and chemical analysis of soil and plant samples indicates that mineral accumulation in plants is substantially affected by the soil characteristics. There is a need for identification of better strategies for the improvement of varieties, especially for small farmers managing marginal soils. More studies should be conducted in order to safeguard these taxa, especially G. glabra var. glandulifera which is collected intensively due to its economic value, the same is true for endemic taxon G. flavescens ssp. flavescens.

Vegetation ecology of the Princes' Islands, Istanbul-Turkey.

The aim of this paper was to evaluate phytoecological and phytosociological characteristics of the vegetation distributed in Princes' Islands (Istanbul/Turkey). Field studies were carried out during 2002-2010 following the classical Braun-Blanquet method. The data obtained from the research area on characteristics of two associations belonging to maquis vegetation was analyzed. One of these associations was new and its detailed description, typification and syntaxonomy are mentioned. The associations identified were: Arbuto unedonis-Phillyretum latifoliae ass. nova and Phillyreo latifoliae-Pinetum brutiae. The physical and chemical characteristics of soil like saturation (%), pH, P20, (kg da-), K20 (kg da1), CaCO, (%), total salt (%) and organic matter (%) are presented as well. Relationship between vegetation, ecological characteristics and their protection against biotic pressures were discussed together with phytosociological and phytoecological features of the associations and was compared with similar other studies.

Bioconversion of methanol to formaldehyde. II. By purified methanol oxidase from modified yeast, Hansenula polymorpha.

Modified methylotrophic yeast Hansenula polymorpha (HP A16) that was obtained by repressing leucine oxotrophic yeast; a wild type of Hansenula polymorpha CB4732 was used in this study. The yeast is grown with methanol, which is used as a sole carbon source, using various methanol concentrations and temperatures, and methanol oxidase (MOX) which is a key enzyme of methanol metabolism; production is maximized. Whole yeast cells were cultivated under optimized inoculation conditions; they were separated into two portions. One portion of these cells was directly used in bioconversion of methanol to formaldehyde. The second portion of the free cells was broken into pieces and a crude enzyme extract was obtained. The MOX enzyme in this extract was purified via salt precipitation, dialysis, and chromatographic methods. The purified MOX enzyme of yeast (HP A16) oxidized the methanol to formaldehyde. Optimization of bioconversion conditions was studied to reach maximum activity of enzyme. The optimum temperature and pH were found to be 35 degrees C and pH 8.0 in boric acid/NaOH buffer, and it was stable over the pH range of 6-9, at the 20 degrees C 15 min. A suitable reaction period was found as 50 min. The enzyme indicated low carbon primary alcohols (C2 to C4), as well as methanol. Initially, MOX activity increased with the increase of methanol concentration, but enzyme activity decreased. The apparent Km and Vmax values for methanol substrate of HP A16 MOX were 0.25 mM and 30 U/mg, respectively. The purified MOX enzyme was applied onto sodium dodecyl sulphate-polyacrylamide gel electrophoresis; molecular weight of the enzyme was calculated to be about 670 kDa. Each MOX enzyme is composed of eight identical subunits, each of whose molecular weight is around 82 kDa and which contain eight moles of FAD as the prosthetic group, and the pI of the natural enzyme is found to be 6.4. The purified MOX enzyme was used in the bioconversion of methanol to formaldehyde as a catalyst; this conversion was compared to the conversion percentages of whole cells in our previous article in terms of catalytic performances.