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1.
J Appl Microbiol ; 103(6): 2550-60, 2007 Dec.
Article in English | MEDLINE | ID: mdl-18045439

ABSTRACT

AIMS: To ameliorate the identification, evaluate the diversity, and determine the antimicrobial sensitivity of 19 oxytetracycline-resistant isolates of Stenotrophomonas sp. and Serratia sp. associated with Costa Rican crops. METHODS AND RESULTS: Phenotypical, chemotaxonomical, and molecular data allocated most isolates to the species Sten. maltophilia and Ser. marcescens. The API profiles, antimicrobial resistance patterns (ATB system), and BOX-polymerase chain reaction (PCR) genomic fingerprints of isolates of Stenotrophomonas sp. exhibited a higher degree of heterogeneity than those obtained for the isolates of Serratia sp. The former group of bacteria exhibited multiresistance to antimicrobials. In contrast, isolates of Serratia sp. were sensitive to the majority of the drugs tested. Changes in the results of the antibiograms throughout incubation, which indicate an induction of tolerance, were observed for isolates of both the species. Minimum inhibitory concentration of oxytetracycline, determined using E-test stripes, were rather elevated. CONCLUSIONS: The occurrence of two species of opportunistic pathogens in crop-associated materials poses a risk to consumers in the community. SIGNIFICANCE AND IMPACT OF THE STUDY: The phenotypic and genotypic data presented could support epidemiologist and physicians dealing with infections caused by environmental strains of these taxa.


Subject(s)
Crops, Agricultural , Oxytetracycline , Serratia/physiology , Stenotrophomonas/physiology , Tetracycline Resistance , Costa Rica , DNA Fingerprinting , Environmental Microbiology , Genes, Bacterial , Microbial Sensitivity Tests , Phenotype , Serratia/genetics , Stenotrophomonas/genetics
2.
J Appl Microbiol ; 99(5): 1108-22, 2005.
Article in English | MEDLINE | ID: mdl-16238741

ABSTRACT

AIM: The microbial composition of biofilms from different locations of beer bottling plants were compared based on fatty acid profiles and correlated with the product-spoiling potential of these biofilms. METHODS AND RESULTS: The whole cell fatty acid profiles of 78 biofilms from bottling plants of two breweries were analysed. About half of the lipid profiles were dominated by oleic and linoleic acid, which refer to a high proportion of yeasts. In addition, more than half of all samples contained dimethylacetals indicating the presence of strictly anaerobic bacteria. Typical fatty acids for potentially beer-spoiling genera were detected in three biofilms. The majority of the biofilms contained no beer-spoiling organisms, as shown by inoculation experiments in beer. CONCLUSIONS: Biofilms from different locations of bottling plants were different with respect to their microbial composition. Potentially product-spoiling populations could be detected in a small number of samples. SIGNIFICANCE AND IMPACT OF THE STUDY: Biofilms on industrial plants can be characterized by a fast and cultivation-independent method with respect to overall microbial composition and presence of potentially product-spoiling micro-organisms.


Subject(s)
Beer/microbiology , Biofilms , Fatty Acids/analysis , Food Microbiology , Food-Processing Industry/methods , Bacteria/chemistry , Biofilms/growth & development , Biomass , Ethanol , Food-Processing Industry/instrumentation , Linoleic Acid/analysis , Nephelometry and Turbidimetry , Oleic Acid/analysis , Yeasts/chemistry
3.
Appl Microbiol Biotechnol ; 56(1-2): 40-57, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11499947

ABSTRACT

Ribosomal RNA-targeted oligonucleotide probes have become valuable tools for the detection of microorganisms involved in important biotechnological processes. Microorganisms which are of major importance for processes such as wastewater treatment, microbial leaching or methane production can be detected and quantified in situ within a complex microbial community. For certain processes, such as nitrification or biological phosphate removal, new microorganisms have become the focus of interest and have led to an improved understanding of these bioremediation techniques. Hybridization techniques have become fast and reliable alternatives to conventional cultivation techniques in the food industry as a control method for starter cultures for fermentation processes or product control. Recent analytical tools such as flow cytometry and digital image processing have improved the efficiency of these techniques. This review is intended to present a summary of methodological aspects of rRNA-based hybridization techniques and their application in biotechnology.


Subject(s)
Biotechnology , Oligonucleotide Probes , RNA, Ribosomal/genetics , Bioreactors , Flow Cytometry , Methane/metabolism , Microscopy , Nucleic Acid Hybridization , Phosphates/isolation & purification , Sewage , Water Microbiology , Water Purification
4.
J Bacteriol ; 183(12): 3800-3, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11371546

ABSTRACT

Cs(+) was found to induce expression of the kdpFABC operon, encoding a high-affinity K(+) uptake system of Escherichia coli. Quantitative expression analyses at the transcriptional and translational levels reveal that CsCl causes much higher induction of kdpFABC than does NaCl. A decrease of the intracellular K(+) concentration is found in cells exposed to CsCl. The results indicate that kdpFABC expression is induced when the intracellular K(+) concentration is lowered. Moreover, the results imply that the signal transduction cascade mediated by KdpD and KdpE is able to integrate multiple signals.


Subject(s)
Adenosine Triphosphatases/metabolism , Carrier Proteins/metabolism , Cation Transport Proteins , Cesium/metabolism , Chlorides/metabolism , Escherichia coli Proteins , Escherichia coli/metabolism , Potassium/metabolism , Adenosine Triphosphatases/genetics , Blotting, Northern , Blotting, Western , Carrier Proteins/genetics , Cesium/pharmacology , Chlorides/pharmacology , Escherichia coli/genetics , Gene Expression Regulation, Bacterial , Operon , RNA, Messenger/analysis , Water-Electrolyte Balance
5.
Biochemistry ; 40(9): 2816-25, 2001 Mar 06.
Article in English | MEDLINE | ID: mdl-11258892

ABSTRACT

V-type ATPases are inhibited by the plecomacrolides bafilomycin and concanamycin, which exert their inhibitory potential at nanomolar concentrations. In addition, some P-type ATPases are inhibited at micromolar concentrations. We initiated intensive structure-activity investigations with semisynthetic concanamycin derivatives to approach the following two questions: (i) What is the pharmacophor, the structural key element, of the plecomacrolides that leads to their inhibitory potential against V- and P-type ATPases? (ii) Where is the binding site within these two different types of ATPases? In a first step, we examined where chemical modifications (O-acylations, substitutions, eliminations) could be placed without seriously affecting the inhibitory potential of the macrolides. In a second step, we used the knowledge of these structure-activity investigations to introduce traceable elements (fluorescent or radioactive) or nitrene-generating azido or carbene-generating diazirine-groups able to bind the inhibitors to their target covalently. These studies led finally to the synthesis of two photoaffinity probes that were used in labeling experiments with the purified plasma membrane V-type ATPase of Manduca sexta (described in a following paper, Huss, M., Gassel, M., Ingenhorst, G., Dröse, S., Zeeck, A., Altendorf, K., Wieczorek, H., manuscript submitted).


Subject(s)
Adenosine Triphosphatases/antagonists & inhibitors , Adenosine Triphosphatases/chemistry , Anti-Bacterial Agents/chemistry , Carrier Proteins/antagonists & inhibitors , Carrier Proteins/chemistry , Cation Transport Proteins , Enzyme Inhibitors/chemistry , Escherichia coli Proteins , Macrolides , Photoaffinity Labels/metabolism , Proton-Translocating ATPases/antagonists & inhibitors , Vacuolar Proton-Translocating ATPases , Adenosine Triphosphatases/isolation & purification , Adenosine Triphosphatases/metabolism , Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/metabolism , Binding, Competitive , Carrier Proteins/isolation & purification , Carrier Proteins/metabolism , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/metabolism , Photoaffinity Labels/chemical synthesis , Plants/enzymology , Proton-Translocating ATPases/metabolism , Structure-Activity Relationship
6.
Eur J Biochem ; 268(6): 1772-81, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11248697

ABSTRACT

The Kdp complex, a high affinity ATP-driven K(+) transport system of Escherichia coli, is composed of the four membrane-bound subunits KdpF, KdpA, KdpB and KdpC. Whereas the role of KdpB (catalytical subunit), KdpA (K(+)-translocating subunit) and KdpF (stabilizing peptide) is well understood, the function of KdpC is still unknown. Therefore, a kdpC deletion strain was constructed and complementation experiments were performed using different kdpC constructs. Truncations of the kdpC gene revealed that only one derivative, which lacks base pairs coding for the four C-terminal amino acids, was able to complement the chromosomal deletion of kdpC. Furthermore, complementation was also observed with kdpC of Mycobacterium tuberculosis, but not with kdpC from Clostridium acetobutylicum or Synechocystis sp. PCC6803. Sequence alignment of 17 different KdpC proteins led to the construction of hybrids between kdpC of E. coli and that of C. acetobutylicum. Complementation revealed that the N-terminal transmembrane segment as well as the C-terminal-third of the protein can be exchanged between both species, but only one after the other. A simultaneous substitution of both regions was not possible.


Subject(s)
Adenosine Triphosphatases/metabolism , Carrier Proteins/metabolism , Cation Transport Proteins , Escherichia coli Proteins , Escherichia coli/metabolism , Potassium/metabolism , Adenosine Triphosphatases/chemistry , Adenosine Triphosphatases/genetics , Amino Acid Sequence , Base Sequence , Carrier Proteins/chemistry , Carrier Proteins/genetics , DNA Primers , Genetic Complementation Test , Ion Transport , Molecular Sequence Data , Plasmids , Protein Structure, Secondary , Sequence Homology, Amino Acid
7.
J Clin Psychopharmacol ; 21(2): 215-22, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11270919

ABSTRACT

Data on liver enzyme elevations were collected in a retrospective study of 7,263 treatment courses with haloperidol, clozapine, perphenazine, and perazine. Charts of 233 patients hospitalized between 1980 and 1992 at Tübingen University Psychiatric Clinic were selected because clinically relevant increases of liver enzymes had been detected during monotherapy with one of the four examined neuroleptics. At least one hepatic enzyme (mostly alanine aminotransferase [ALAT]) exceeded the established reference range of 3-fold elevations of ALAT, aspartate aminotransferase, gamma-glutamyl transpeptidase, and glutamate dehydrogenase and 2-fold elevations of alkaline phosphatase (AP) during monotherapy with clozapine in 15%, perazine in 7.6%, perphenazine in 4%, and haloperidol in 2.4% of the cases. If all liver enzyme abnormalities with any elevation greater than the conventional upper limits are considered, incidences were as follows: clozapine, 78%; perphenazine, 62%; perazine, 59%; and haloperidol, 50%. Testing for overall differences within the four neuroleptics resulted in significantly different incidences of liver enzyme elevations (chi2 test,p < 0.0001). Threefold increases of AP (>540 U/L) were seen in three patients receiving haloperidol (0.3%) only. Twofold increases of AP (>360 U/L) were distributed as follows: clozapine, 1%; haloperidol, 0.8%; perazine, 0.3%; and perphenazine, 0.1%. Only in the group with 1-fold elevations of AP (>180 U/L) were the differences within the drug regimens significant (clozapine, 40.3%; haloperidol, 33.2%; perphenazine, 23.4%; and perazine, 23.1%; chi2 test, p < 0.0001). In the period under study, no instance of icterus occurred.


Subject(s)
Antipsychotic Agents/pharmacology , Liver/drug effects , Schizophrenia/enzymology , Alanine Transaminase/drug effects , Alanine Transaminase/metabolism , Antipsychotic Agents/therapeutic use , Aspartate Aminotransferases/drug effects , Aspartate Aminotransferases/metabolism , Chi-Square Distribution , Clozapine/pharmacology , Clozapine/therapeutic use , Female , Glutamate Dehydrogenase/drug effects , Glutamate Dehydrogenase/metabolism , Haloperidol/pharmacology , Haloperidol/therapeutic use , Humans , Liver/enzymology , Male , Perazine/pharmacology , Perazine/therapeutic use , Perphenazine/pharmacology , Perphenazine/therapeutic use , Retrospective Studies , Schizophrenia/drug therapy , Statistics, Nonparametric , gamma-Glutamyltransferase/drug effects , gamma-Glutamyltransferase/metabolism
8.
Infect Immun ; 69(2): 1178-80, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11160017

ABSTRACT

In the presence of urea, Helicobacter pylori survived for at least 3 h at pH 1. Under these conditions, the cells maintained their cytoplasmic pH at 5.8. De novo protein synthesis during acid shock was not essential for survival of H. pylori at pH 1.


Subject(s)
Cytoplasm/metabolism , Helicobacter pylori/physiology , Chloramphenicol/pharmacology , Homeostasis , Hydrogen-Ion Concentration
9.
Syst Appl Microbiol ; 24(3): 377-84, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11822673

ABSTRACT

The fatty acid profiles of all described species of the nitrite-oxidizing genera Nitrobacter, Nitrococcus, Nitrospina and Nitrospira were analyzed. The four genera had distinct profiles, which can be used for the differentiation and allocation of new isolates to these genera. The genus Nitrobacter is characterized by vaccenic acid as the main compound with up to 92% of the fatty acids and the absence of hydroxy fatty acids. The genus Nitrococcus showed cis-9-hexadecenoic acid, hexadecanoic acid and vaccenic acid as main parts. Small amounts of 3-hydroxy-dodecanoic acid were detected. The genus Nitrospina possessed tetradecanoic acid and cis-9-hcxadecenoic acid as main compounds, also 3-hydroxy-hexadecanoic acid was detected for this genus. The genus Nitrospira showed a pattern with more variations among the two described species. These organisms are characterized by the cis-7 and cis-11-isomers of hexadecenoic acid. For Nitrospira moscoviensis a specific new fatty acid was found, which represented the major constituent in the fatty acid profiles of autotrophically grown cultures. It was identified as 11-methyl-hexadecanoic acid. Since this compound is not known for other bacterial taxa, it represents a potential lipid marker for the detection of Nitrospira moscoviensis relatives in enrichment cultures and environmental samples. A cluster analysis of the fatty acid profiles is in accordance with 16S rRNA sequence-based phylogeny of the nitrite-oxidizing bacteria.


Subject(s)
Bradyrhizobiaceae/classification , Fatty Acids/analysis , Nitrites/metabolism , Nitrobacter/classification , Bradyrhizobiaceae/chemistry , DNA, Ribosomal/chemistry , Nitrobacter/chemistry , Oxidation-Reduction , Phylogeny , RNA, Ribosomal, 16S/genetics
10.
Mol Microbiol ; 38(5): 1086-92, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11123681

ABSTRACT

The KdpD sensor kinase and the KdpE response regulator control the expression of the kdpFABC operon, encoding the KdpFABC high-affinity K+ transport system of Escherichia coli. Low turgor pressure has been postulated to be the environmental stimulus to express KdpFABC. KdpD has autokinase, phosphotransferase and, like many sensor kinases, response regulator (phospho-KdpE) specific phosphatase activity. To determine which of these activities are altered in response to the environmental stimulus, we isolated and analysed six kdpD mutants that cause constitutive expression of KdpFABC. In three of the mutants, phosphatase activity was undetectable and, in two, phosphatase was reduced. Kinase activity was unaffected in four of the mutants, but elevated in one. In one mutant, a pseudorevertant of a kdpD null mutation, kinase and phosphatase were both reduced to 20% of the wild-type level. These findings suggest that initiation of signal transduction by KdpD is mediated by the inhibition of the phospho-KdpE-specific phosphatase activity of KdpD, leading to an accumulation of phospho-KdpE, which in turn activates the expression of the KdpFABC system. The data also suggest that levels of activity in vitro may differ from what occurs in vivo, because in vitro conditions cannot replicate those in vivo.


Subject(s)
Bacterial Proteins/metabolism , Escherichia coli Proteins , Escherichia coli/enzymology , Protein Kinases/metabolism , Bacterial Proteins/genetics , Cloning, Molecular , Mutation , Protein Kinases/genetics
11.
J Biol Chem ; 275(51): 40142-7, 2000 Dec 22.
Article in English | MEDLINE | ID: mdl-11016946

ABSTRACT

The membrane-bound histidine kinase KdpD is a putative turgor sensor that regulates, together with the response regulator KdpE, the expression of the kdpFABC operon coding for the high affinity K(+)-uptake system KdpFABC of Escherichia coli. To elucidate the nature of the primary stimulus for KdpD, we developed an in vitro assay based on right-side-out membrane vesicles. Conditions were varied inside and outside of the vesicles, and KdpD autophosphorylation activity was tested. It was shown that an increase of the ionic strength inside the vesicles was accompanied by an increase of the autophosphorylation activity of KdpD with ATP. However, K(+) at concentrations higher than 1 mm inhibited KdpD autophosphorylation activity. This K(+)-specific effect was not observed with KdpD-Arg-511 --> Gln, a KdpD derivative, which causes K(+)-independent kdpFABC expression. When the osmolality outside the vesicles was increased, autophosphorylation activity of KdpD was stimulated, whereby salts were more effective than sugars. Treatment of the vesicles with amphipathic compounds did not affect KdpD autophosphorylation activity. Based on these results it is proposed that changes of intracellular parameters elicited by K(+) limitation or osmotic upshock directly influence KdpD autophosphorylation activity, whereby K(+) has an inhibitory and ionic strength a stimulatory effect.


Subject(s)
Bacterial Proteins/metabolism , Escherichia coli Proteins , Escherichia coli/metabolism , Potassium/pharmacology , Protein Kinases/metabolism , Adenosine Triphosphate/metabolism , Osmolar Concentration , Phosphorylation , Sodium Chloride/pharmacology
12.
Biophys J ; 79(2): 802-13, 2000 Aug.
Article in English | MEDLINE | ID: mdl-10920013

ABSTRACT

Replacement of glycine residue 232 with aspartate in the KdpA subunit of the K(+)-translocating KdpFABC complex of Escherichia coli leads to a transport complex that has reduced affinity for K(+) and has lost the ability to discriminate Rb(+) ions (, J. Biol. Chem. 270:6678-6685). This glycine residue is the first in a highly conserved GGG motif that was aligned with the GYG sequence of the selectivity filter (P- or H5-loop) of K(+) channels (, Nature. 371:119-122). Investigations with the purified and reconstituted KdpFABC complex using the potential sensitive fluorescent dye DiSC(3)(5) and the "caged-ATP/planar bilayer method" confirm the altered ion specificity observed in uptake measurements with whole cells. In the absence of cations a transient current was observed in the planar bilayer measurements, a phenomenon that was previously observed with the wild-type enzyme and with another kdpA mutant (A:Q116R) and most likely represents the movement of a protein-fixed charge during a conformational transition. After addition of K(+) or Rb(+), a stationary current could be observed, representing the continuous pumping activity of the KdpFABC complex. In addition, DiSC(3)(5) and planar bilayer measurements indicate that the A:G232D Kdp-ATPase also transports Na(+), Li(+), and H(+) with a reduced rate. Similarities to mutations in the GYG motif of K(+) channels are discussed.


Subject(s)
Adenosine Triphosphatases/chemistry , Adenosine Triphosphatases/metabolism , Aspartic Acid , Carrier Proteins/chemistry , Carrier Proteins/metabolism , Cation Transport Proteins , Escherichia coli Proteins , Glycine , Potassium/metabolism , Amino Acid Sequence , Amino Acid Substitution , Cell Membrane/physiology , Cell Membrane/ultrastructure , Escherichia coli/physiology , Kinetics , Lipid Bilayers , Liposomes , Macromolecular Substances , Membrane Potentials , Models, Molecular , Molecular Sequence Data , Protein Conformation , Proteolipids/chemistry , Proteolipids/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism
13.
Biochim Biophys Acta ; 1458(2-3): 364-73, 2000 May 31.
Article in English | MEDLINE | ID: mdl-10838051

ABSTRACT

In this review we discuss recent work from our laboratory concerning the structure and/or function of the F(0) subunits of the proton-translocating ATP synthase of Escherichia coli. For the topology of subunit a a brief discussion gives (i) a detailed picture of the C-terminal two-thirds of the protein with four transmembrane helices and the C terminus exposed to the cytoplasm and (ii) an evaluation of the controversial results obtained for the localization of the N-terminal region of subunit a including its consequences on the number of transmembrane helices. The structure of membrane-bound subunit b has been determined by circular dichroism spectroscopy to be at least 75% alpha-helical. For this purpose a method was developed, which allows the determination of the structure composition of membrane proteins in proteoliposomes. Subunit b was purified to homogeneity by preparative SDS gel electrophoresis, precipitated with acetone, and redissolved in cholate-containing buffer, thereby retaining its native conformation as shown by functional coreconstitution with an ac subcomplex. Monoclonal antibodies, which have their epitopes located within the hydrophilic loop region of subunit c, and the F(1) part are bound simultaneously to the F(0) complex without an effect on the function of F(0), indicating that not all c subunits are involved in F(1) interaction. Consequences on the coupling mechanism between ATP synthesis/hydrolysis and proton translocation are discussed.


Subject(s)
Escherichia coli/enzymology , Proton-Translocating ATPases/chemistry , ATP Synthetase Complexes , Membrane Proteins/chemistry , Multienzyme Complexes/chemistry , Multienzyme Complexes/metabolism , Mutation , Phosphotransferases (Phosphate Group Acceptor)/chemistry , Phosphotransferases (Phosphate Group Acceptor)/metabolism , Protein Binding , Protein Conformation , Protein Structure, Secondary , Proteolipids/chemistry , Proton-Translocating ATPases/metabolism
14.
Int J Syst Evol Microbiol ; 50 Pt 1: 273-282, 2000 Jan.
Article in English | MEDLINE | ID: mdl-10826814

ABSTRACT

A group of yellow-pigmented isolates from ammonia-supplied biofilters showed an unusual denitrification reaction. All strains reduced nitrite but not nitrate without production of nitrogen (N2). The only product found was nitrous oxide (N2O). The strains were divided into two clusters and one separate strain by their fatty acid profiles, which were similar to the fatty acid profiles of the genera Xanthomonas and Stenotrophomonas. Analyses of the 165 rDNA sequences showed that these clusters and the separate strain form three independent lines within the Xanthomonas branch of the Proteobacteria. The evolutionary distances of the isolates to members of the related genera Xanthomonas, Stenotrophomonas and Xylella calculated by the 16S rDNA sequences led to the proposal of two new genera and three new species, Stenotrophomonas nitritireducens sp. nov., Luteimonas mephitis gen. nov., sp. nov. and Pseudoxanthomonas broegbernensis gen. nov., sp. nov. The type strains are Stenotrophomonas nitritireducens L2T (= DSM 12575T), Luteimonas mephitis B1953/27.1T (= DSM 12574T) and Pseudoxanthomonas broegbernensis B1616/1T (= DSM 12573T).


Subject(s)
Filtration/instrumentation , Gammaproteobacteria/classification , Nitrous Oxide/metabolism , Stenotrophomonas/classification , Xanthomonas/classification , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Fatty Acids/analysis , Gammaproteobacteria/physiology , Gases , Industrial Waste , Molecular Sequence Data , Nitrites/metabolism , Nucleic Acid Hybridization , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Stenotrophomonas/physiology , Xanthomonas/chemistry , Xanthomonas/genetics , Xanthomonas/physiology
15.
Eur J Biochem ; 267(10): 3040-8, 2000 May.
Article in English | MEDLINE | ID: mdl-10806404

ABSTRACT

Subunit b of the Escherichia coli ATP synthase was isolated by preparative gel electrophoresis, acetone precipitated and after ion-pair extraction redissolved in a buffer either containing n-dodecyl-beta-D-maltoside or sodium cholate. The secondary structure of isolated subunit b was shown to be the same as within the FO complex, but was strongly dependent on the detergent used for replacement of the phospholipid environment. This was shown by an identical tryptic digestion pattern, which was strongly influenced by the detergent used for solubilization. An influence of the detergent n-dodecyl-beta-D-maltoside on the secondary structure of the hydrophilic part of subunit b was also shown for the soluble part of the polypeptide comprising residues Val25 to Leu156 (bsol) using CD spectroscopy. In order to determine the secondary structure of subunit b in its native conformation, isolated subunit b was reconstituted into E. coli lipid vesicles and analyzed with CD spectroscopy. The resulting spectrum revealed a secondary structure composition of 80% alpha helix together with 14% beta turn conformation. These results suggest that subunit b is not a rigid rod-like alpha helix simply linking F1 to FO, but rather provides an inherent flexibility for the storage of elastic energy within the second stalk generated by rotational movements within the F1FO complex.


Subject(s)
Proton-Translocating ATPases/chemistry , Circular Dichroism , Detergents/pharmacology , Electrophoresis, Polyacrylamide Gel , Escherichia coli/enzymology , Glucosides/pharmacology , Protein Structure, Secondary , Proteolipids/metabolism , Protons , Time Factors , Trypsin/metabolism
16.
J Bacteriol ; 182(11): 3204-9, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10809701

ABSTRACT

The only enzyme of the citric acid cycle for which no open reading frame (ORF) was found in the Helicobacter pylori genome is the NAD-dependent malate dehydrogenase. Here, it is shown that in this organism the oxidation of malate to oxaloacetate is catalyzed by a malate:quinone oxidoreductase (MQO). This flavin adenine dinucleotide-dependent membrane-associated enzyme donates electrons to quinones of the electron transfer chain. Similar to succinate dehydrogenase, it is part of both the electron transfer chain and the citric acid cycle. MQO activity was demonstrated in isolated membranes of H. pylori. The enzyme is encoded by the ORF HP0086, which is shown by the fact that expression of the HP0086 sequence from a plasmid induces high MQO activity in mqo deletion mutants of Escherichia coli or Corynebacterium glutamicum. Furthermore, this plasmid was able to complement the phenotype of the C. glutamicum mqo deletion mutant. Interestingly, the protein predicted to be encoded by this ORF is only distantly related to known or postulated MQO sequences from other bacteria. The presence of an MQO shown here and the previously demonstrated presence of a 2-ketoglutarate:ferredoxin oxidoreductase and a succinyl-coenzyme A (CoA):acetoacetyl-CoA transferase indicate that H. pylori possesses a complete citric acid cycle, but one which deviates from the standard textbook example in three steps.


Subject(s)
Citric Acid Cycle/genetics , Helicobacter pylori/genetics , Malates/metabolism , Membrane Proteins/genetics , Oxaloacetic Acid/metabolism , Quinone Reductases/genetics , Cloning, Molecular , Genetic Complementation Test , Helicobacter pylori/enzymology , Models, Biological , Molecular Sequence Data , Oxidation-Reduction , Quinone Reductases/metabolism , Subcellular Fractions/enzymology
17.
J Biol Chem ; 275(22): 17080-5, 2000 Jun 02.
Article in English | MEDLINE | ID: mdl-10747873

ABSTRACT

The putative turgor sensor KdpD is characterized by a large, N-terminal domain of about 400 amino acids, which is not found in any other known sensor kinase. Comparison of 12 KdpD sequences from various microorganisms reveals that this part of the kinase is highly conserved and includes two motifs (Walker A and Walker B) that are very similar to the classical ATP-binding sites of ATP-requiring enzymes. By means of photoaffinity labeling with 8-azido-[alpha-(32)P]ATP, direct evidence was obtained for the existence of an ATP-binding site located in the N-terminal domain of KdpD. The N-terminal domain, KdpD/1-395, was overproduced and purified. Although predicted to be hydrophilic, it was found to be membrane-associated and could be solubilized either by treatment with buffer of low ionic strength or detergent. The membrane-associated form, but not the solubilized one, retained the ability to bind 8-azido-[alpha-(32)P]ATP. Previously, it was shown that the phosphatase activity of a truncated KdpD, KdpD/Delta12-395, is deregulated in vitro (Jung, K., and Altendorf, K. (1998) J. Biol. Chem. 273, 17406-17410). Here, we demonstrated that this effect was reversed in vesicles containing both the truncated KdpD and the N-terminal domain. Furthermore, coexpression of kdpD/Delta12-395 and kdpD/1-395 restored signal transduction in vivo. These results highlight the importance of the N-terminal domain for the function of KdpD and provide evidence for an interaction of this domain and the transmitter domain of the sensor kinase.


Subject(s)
Bacterial Proteins/metabolism , Escherichia coli Proteins , Escherichia coli/enzymology , Protein Kinases/metabolism , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Molecular Sequence Data , Mutagenesis, Site-Directed , Photoaffinity Labels , Protein Binding , Protein Kinases/chemistry , Protein Kinases/genetics , Sequence Homology, Amino Acid
18.
J Bioenerg Biomembr ; 32(4): 357-64, 2000 Aug.
Article in English | MEDLINE | ID: mdl-11768297

ABSTRACT

Membrane-bound ATP synthases (F1F0) catalyze the synthesis of ATP via a rotary catalytic mechanism utilizing the energy of an electrochemical ion gradient. The transmembrane potential is supposed to propel rotation of a subunit c ring of F0 together with subunits gamma and epsilon of F1, thereby forming the rotor part of the enzyme, whereas the remainder of the F1F0 complex functions as a stator for compensation of the torque generated during rotation. This review focuses on our recent work on the stator part of the F0 complex, e.g., subunits a and b. Using epitope insertion and antibody binding, subunit a was shown to comprise six transmembrane helixes with both the N- and C-terminus oriented toward the cytoplasm. By use of circular dichroism (CD) spectroscopy, the secondary structure of subunit b incorporated into proteoliposomes was determined to be 80% alpha-helical together with 14% beta turn conformation, providing flexibility to the second stalk. Reconstituted subunit b together with isolated ac subcomplex was shown to be active in proton translocation and functional F1 binding revealing the native conformation of the polypeptide chain. Chemical crosslinking in everted membrane vesicles led to the formation of subunit b homodimers around residues bQ37 to bL65, whereas bA32C could be crosslinked to subunit a, indicating a close proximity of subunits a and b near the membrane. Further evidence for the proposed direct interaction between subunits a and b was obtained by purification of a stable ab2 subcomplex via affinity chromatography using His tags fused to subunit a or b. This ab2 subcomplex was shown to be active in proton translocation and F1 binding, when coreconstituted with subunit c. Consequences of crosslink formation and subunit interaction within the F1F0 complex are discussed.


Subject(s)
Escherichia coli/enzymology , Proton-Translocating ATPases/chemistry , Dimerization , Models, Molecular , Protein Structure, Secondary , Protein Subunits
19.
J Exp Biol ; 203(Pt 1): 19-28, 2000 Jan.
Article in English | MEDLINE | ID: mdl-10600669

ABSTRACT

The membrane-bound ATP synthase (F(1)F(o)) from mitochondria, chloroplasts and bacteria plays a crucial role in energy-transducing reactions. In the case of Escherichia coli, the reversible, proton-translocating ATPase complex consists of two different entities, F(1) and F(o). The water-soluble F(1) part carries the catalytic sites for ATP synthesis and hydrolysis. It is associated with the membrane-embedded F(o) complex, which functions as a proton channel and consists of subunits a, b and c present in a stoichiometry of 1:2:12. Subunit b was isolated by preparative gel electrophoresis, acetone-precipitated and renatured in a cholate-containing buffer. Reconstituted subunit b together with purified ac subcomplex is active in proton translocation and F(1) binding, thereby demonstrating that subunit b had recovered its native conformation. Circular dichroism spectroscopy of subunit b reconstituted into liposomes revealed a rather high degree of alpha -helical conformation of 80%. After addition of a His(6)-tag to the N terminus of subunit a, a stable ab(2) subcomplex was purified instead of a single subunit a, arguing in favour of a direct interaction between these subunits. After addition of subunit c and reconstitution into phospholipid vesicles, an F(o) complex was obtained exhibiting rates of proton translocation and F(1) binding comparable with those of wild-type F(o). The epitopes of monoclonal antibodies against subunit c are located in the hydrophilic loop region (cL31-Q42) as mapped by enzyme-linked immunosorbent assay using overlapping synthetic heptapeptides. Binding studies revealed that all monoclonal antibodies (mAbs) bind to everted membrane vesicles irrespective of the presence or absence of F(1). Although the hydrophilic region of subunit c, and especially the highly conserved residues cA40, cR41, cQ42 and cP43, are known to interact with subunits gamma and epsilon of the F(1) part, the mAb molecules have no effect on the function of F(o), either in proton translocation or in F(1) binding. However, the F(1) part and the mAb molecule(s) are bound simultaneously to the F(o) complex, suggesting that not all c subunits are involved in the interaction with F(1).


Subject(s)
Escherichia coli/enzymology , Proton-Translocating ATPases/chemistry , Proton-Translocating ATPases/metabolism , Antibodies, Monoclonal , Models, Molecular , Molecular Structure , Protein Conformation , Protein Structure, Secondary
20.
J Biol Chem ; 274(53): 37901-7, 1999 Dec 31.
Article in English | MEDLINE | ID: mdl-10608856

ABSTRACT

The kdpABC operon codes for the high affinity K(+)-translocating Kdp complex (P-type ATPase) of Escherichia coli. Upon expression of this operon in minicells, a so far unrecognized small hydrophobic polypeptide, KdpF, could be identified on high resolution SDS-polyacrylamide gels in addition to the subunits KdpA, KdpB, and KdpC. Furthermore, it could be demonstrated that KdpF remains associated with the purified complex. As determined by mass spectrometry, this peptide is present in its formylated form and has a molecular mass of 3100 Da. KdpF is not essential for growth on low K(+) (0.1 mM) medium, as shown by deletion analysis of kdpF, but proved to be indispensable for a functional enzyme complex in vitro. In the absence of KdpF, the ATPase activity of the membrane-bound Kdp complex was almost indistinguishable from that of the wild type. In contrast, the purified detergent-solubilized enzyme complex showed a dramatic decrease in enzymatic activity. However, addition of purified KdpF to the KdpABC complex restored the activity up to wild type level. It is interesting to note that the addition of high amounts of E. coli lipids had a similar effect. Although KdpF is not essential for the function of the Kdp complex in vivo, it is part of the complex and functions as a stabilizing element in vitro. The corresponding operon should now be referred to as kdpFABC.


Subject(s)
Adenosine Triphosphatases/metabolism , Carrier Proteins/metabolism , Cation Transport Proteins , Escherichia coli Proteins , Escherichia coli/metabolism , Potassium/metabolism , Adenosine Triphosphatases/chemistry , Adenosine Triphosphatases/genetics , Adenosine Triphosphatases/isolation & purification , Amino Acid Sequence , Base Sequence , Carrier Proteins/chemistry , Carrier Proteins/genetics , Carrier Proteins/isolation & purification , Chromatography, Ion Exchange , Codon, Initiator , Enzyme Activation , Enzyme Stability , Escherichia coli/growth & development , Ion Transport , Molecular Sequence Data , Mutagenesis, Site-Directed , Operon
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