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1.
J Med Syst ; 48(1): 47, 2024 Apr 25.
Article in English | MEDLINE | ID: mdl-38662184

ABSTRACT

Ontologies serve as comprehensive frameworks for organizing domain-specific knowledge, offering significant benefits for managing clinical data. This study presents the development of the Fall Risk Management Ontology (FRMO), designed to enhance clinical text mining, facilitate integration and interoperability between disparate data sources, and streamline clinical data analysis. By representing major entities within the fall risk management domain, the FRMO supports the unification of clinical language and decision-making processes, ultimately contributing to the prevention of falls among older adults. We used Ontology Web Language (OWL) to build the FRMO in Protégé. Of the seven steps of the Stanford approach, six steps were utilized in the development of the FRMO: (1) defining the domain and scope of the ontology, (2) reusing existing ontologies when possible, (3) enumerating ontology terms, (4) specifying the classes and their hierarchy, (5) defining the properties of the classes, and (6) defining the facets of the properties. We evaluated the FRMO using four main criteria: consistency, completeness, accuracy, and clarity. The developed ontology comprises 890 classes arranged in a hierarchical structure, including six top-level classes with a total of 43 object properties and 28 data properties. FRMO is the first comprehensively described semantic ontology for fall risk management. Healthcare providers can use the ontology as the basis of clinical decision technology for managing falls among older adults.


Subject(s)
Accidental Falls , Data Mining , Risk Management , Accidental Falls/prevention & control , Humans , Data Mining/methods , Biological Ontologies , Electronic Health Records/organization & administration , Semantics
2.
Comput Biol Med ; 165: 107338, 2023 10.
Article in English | MEDLINE | ID: mdl-37625260

ABSTRACT

Machine learning has gained popularity in predicting survival time in the medical field. This review examines studies utilizing machine learning and data-mining techniques to predict lung cancer survival using clinical data. A systematic literature review searched MEDLINE, Scopus, and Google Scholar databases, following reporting guidelines and using the COVIDENCE system. Studies published from 2000 to 2023 employing machine learning for lung cancer survival prediction were included. Risk of bias assessment used the prediction model risk of bias assessment tool. Thirty studies were reviewed, with 13 (43.3%) using the surveillance, epidemiology, and end results database. Missing data handling was addressed in 12 (40%) studies, primarily through data transformation and conversion. Feature selection algorithms were used in 19 (63.3%) studies, with age, sex, and N stage being the most chosen features. Random forest was the predominant machine learning model, used in 17 (56.6%) studies. While the number of lung cancer survival prediction studies is limited, the use of machine learning models based on clinical data has grown since 2012. Consideration of diverse patient cohorts and data pre-processing are crucial. Notably, most studies did not account for missing data, normalization, scaling, or standardized data, potentially introducing bias. Therefore, a comprehensive study on lung cancer survival prediction using clinical data is needed, addressing these challenges.


Subject(s)
Lung Neoplasms , Humans , Lung Neoplasms/diagnosis , Algorithms , Machine Learning , Data Mining/methods , Random Forest
3.
JCO Clin Cancer Inform ; 7: e2300011, 2023 06.
Article in English | MEDLINE | ID: mdl-37311162

ABSTRACT

PURPOSE: The purpose of this study was to apply different time series analytical techniques to SEER US lung cancer death rate data to develop a best fit model. METHODS: Three models for yearly time series predictions were built: autoregressive integrated moving average (ARIMA), simple exponential smoothing (SES), and Holt's double expansional smoothing (HDES) models. The three models were built using Python 3.9, on the basis of Anaconda 2022.10. RESULTS: This study used SEER data from 1975 to 2018 and included 545,486 patients with lung cancer. The best parameters for ARIMA are ARIMA (p, d, q) = (0, 2, 2). In addition, the best parameter for SES was α = .995, whereas the best parameters for HDES were α = .4 and ß = .9. The HDES was the model that best fit the lung cancer death rate data, with a root mean square error (RMSE) of 132.91. CONCLUSION: Including monthly diagnoses, death rates, and years in SEER data increases the number of observations for training and test sets, enhancing the performance of time series models. The reliability of the RMSE was based on the mean lung cancer mortality rate. Owing to the high mean lung cancer death rate of 8,405 patients per year, it is acceptable for reliable models to have large RMSEs.


Subject(s)
Lung Neoplasms , Humans , Reproducibility of Results , Time Factors
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