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1.
Compend Contin Educ Dent ; 36(1): e2-e5, 2016 May.
Article in English | MEDLINE | ID: mdl-34000780

ABSTRACT

Dentin hypersensitivity represents one of the most commonly occurring dental problems. Despite its prevalence, the condition is usually underdiagnosed and undertreated. Recently, a user-friendly technology involving an oxalate-based strip was developed for treatment of dentin hypersensitivity. This novel sensitivity strip affords some of the same conveniences seen with whitening strips, and like those strips, may allow direct professional application. Strip usage is similar irrespective of the setting (office or home), with a low total amount of an oxalate gel delivered continuously over a 10-minute period to occlude dentin tubules and reduce sensitivity. Real and transcending evidence (preclinical and clinical), including practice-based research, exists on the strip technology's effects, which makes this supplement particularly relevant to the practicing professional.

2.
Biochemistry ; 50(24): 5544-54, 2011 Jun 21.
Article in English | MEDLINE | ID: mdl-21574570

ABSTRACT

Mammalian type B (mitochondrial) b(5) cytochromes exhibit greater amino acid sequence diversity than their type A (microsomal) counterparts, as exemplified by the type B proteins from human (hCYB5B) and rat (rCYB5B). The comparison of X-ray crystal structures of hCYB5B and rCYB5B reported herein reveals a striking difference in packing involving the five-strand ß-sheet, which can be attributed to fully buried residue 21 in strand ß4. The greater bulk of Leu21 in hCYB5B in comparison to that of Thr21 in rCYB5B results in a substantial displacement of the first two residues in ß5, and consequent loss of two of the three hydrogen bonds between ß5 and ß4. Hydrogen bonding between the residues is instead mediated by two well-ordered, fully buried water molecules. In a 10 ns molecular dynamics simulation, one of the buried water molecules in the hCYB5B structure exchanged readily with solvent via intermediates having three water molecules sandwiched between ß4 and ß5. When the buried water molecules were removed prior to a second 10 ns simulation, ß4 and ß5 formed persistent hydrogen bonds identical to those in rCYB5B, but the Leu21 side chain was forced to adopt a rarely observed conformation. Despite the apparently greater ease of access of water to the interior of hCYB5B than of rCYB5B suggested by these observations, the two proteins exhibit virtually identical stability, dynamic, and redox properties. The results provide new insight into the factors stabilizing the cytochrome b(5) fold.


Subject(s)
Carrier Proteins/chemistry , Carrier Proteins/genetics , Cytochromes b5/chemistry , Cytochromes b5/genetics , Hemeproteins/chemistry , Hemeproteins/genetics , Amino Acid Sequence , Amino Acid Substitution , Animals , Crystallography, X-Ray , Enzyme Stability , Heme-Binding Proteins , Humans , Hydrogen Bonding , Hydrophobic and Hydrophilic Interactions , Models, Molecular , Molecular Dynamics Simulation , Molecular Sequence Data , Mutagenesis, Site-Directed , Mutation , Oxidation-Reduction , Protein Interaction Domains and Motifs , Protein Structure, Secondary , Rats , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Sequence Homology, Amino Acid , Species Specificity , Water/chemistry
3.
Protein Eng Des Sel ; 18(12): 571-9, 2005 Dec.
Article in English | MEDLINE | ID: mdl-16246823

ABSTRACT

The outer mitochondrial membrane isoform of mammalian cytochrome b5 (OM b5) is much less prone to lose heme than the microsomal isoform (Mc b5), with a conserved difference at position 71 (leucine versus serine) playing a major role. We replaced Ser71 in Mc b5 with Leu, with the prediction that it would retard heme loss by diminishing polypeptide expansion accompanying rupture of the histidine to iron bonds. The strategy was partially successful in that it slowed dissociation of heme from its less stable orientation in bMc b5 (B). Heme dissociation from orientation A was accelerated to a similar extent, however, apparently owing to increased binding pocket dynamic mobility related to steric strain. A second mutation (L32I) guided by results of previous comparative studies of Mc and OM b5s diminished the steric strain, but much greater relief was achieved by replacing heme with iron deuteroporphyrin IX (FeDPIX). Indeed, the stability of the Mc(S71L) b5 FeDPIX complex is similar to that of the FeDPIX complex of OM b5. The results suggest that maximizing heme binding pocket compactness in the apo state is a useful general strategy for increasing the stability of engineered or designed proteins.


Subject(s)
Cytochromes b5/chemistry , Microsomes/chemistry , Mitochondrial Membranes/chemistry , Amino Acid Sequence , Amino Acid Substitution , Animals , Binding Sites , Circular Dichroism , Deuteroporphyrins/chemistry , Heme/chemistry , Light , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed , Protein Conformation , Protein Isoforms/chemistry , Scattering, Radiation
4.
Biochemistry ; 44(26): 9308-19, 2005 Jul 05.
Article in English | MEDLINE | ID: mdl-15981997

ABSTRACT

Native-state hydrogen-deuterium exchange (HDX) monitored by NMR spectroscopy has been used to compare conformational plasticity in ferric rat liver outer mitochondrial membrane cytochrome b5 (rOM b5) and ferric bovine liver microsomal cytochrome b5 (bMc b5). Analysis of the data indicated that rOM b5 is the less conformationally flexible protein on the time scale probed by the HDX experiments. The data also suggest a likely contributor to the much higher kinetic barrier for the release of hemin from OM b5s in comparison to Mc b5s, a characteristic that may be to a large extent the source of their divergent functional properties. Specifically, the data indicate that conformational mobility within helices alpha4 and alpha5, which flank the loop harboring axial ligand His63, is considerably more restricted in rOM b5 than in bMc b5. The lower conformational flexibility of alpha4 and alpha5 in rOM b5 can reasonably be attributed to more extensive hydrophobic packing in that region of the protein, arising from two conserved side chain packing motifs in OM cytochrome b5s [Altuve, A., Wang, L., Benson, D. R., and Rivera, M. (2004) Biochem. Biophys. Res. Commun. 314, 602-609].


Subject(s)
Cytochromes b5/chemistry , Microsomes, Liver/enzymology , Mitochondria, Liver/enzymology , Protein Folding , Amino Acid Sequence , Animals , Models, Molecular , Molecular Sequence Data , Protein Structure, Secondary , Rats , Sequence Homology, Amino Acid , Thermodynamics
5.
Biochem Biophys Res Commun ; 314(2): 602-9, 2004 Feb 06.
Article in English | MEDLINE | ID: mdl-14733950

ABSTRACT

The only outer mitochondrial membrane cytochrome b(5) examined to date, from rat (rOM b(5)), exhibits greater stability than known mammalian microsomal (Mc) isoforms, as well as a much higher kinetic barrier for hemin dissociation and a more negative reduction potential. A BlastP search of available databases using the protein sequence of rOM b(5) as template revealed entries for analogous proteins from human (hOM b(5)) and mouse (mOM b(5)). We prepared a synthetic gene coding for the heme-binding domain of hOM b(5), and expressed the protein to high levels. The hOM protein exhibits stability, hemin-binding, and redox properties similar to those of rOM b(5), suggesting that they are characteristic of the OM b(5) subfamily. The divergence in properties between the OM and Mc b(5) isoforms in mammals can be attributed, at least in part, to the presence of two extended hydrophobic patches in the former. The biophysical properties characteristic of the OM proteins may be important in facilitating the two functions proposed for them so far, reduction of ascorbate radical and stimulation of androgen synthesis.


Subject(s)
Cytochromes b5/chemistry , Cytochromes b5/physiology , Microsomes/metabolism , Mitochondria/metabolism , Amino Acid Sequence , Androgens/metabolism , Animals , Base Sequence , DNA/chemistry , Electrochemistry , Endoplasmic Reticulum/metabolism , Heme/chemistry , Hemin/chemistry , Horses , Humans , Kinetics , Magnetic Resonance Spectroscopy , Mice , Models, Chemical , Models, Molecular , Molecular Sequence Data , Protein Conformation , Protein Isoforms , Protein Structure, Tertiary , Rats , Sequence Homology, Amino Acid , Structure-Activity Relationship , Temperature , Ultraviolet Rays
6.
Biochemistry ; 41(39): 11566-81, 2002 Oct 01.
Article in English | MEDLINE | ID: mdl-12269800

ABSTRACT

As part of a larger effort to engineer the stability and hemin-binding properties of microsomal (Mc) cytochromes b(5) into rat liver outer mitochondrial membrane (OM) cytochrome (cyt) b(5), several mutants of rat OM cyt b(5) were prepared to study the effect of gradual and complete elimination of two extended hydrophobic networks, which are present in the structure of the mitochondrial protein and are absent in the structure of mammalian Mc cytochromes b(5). One of the hydrophobic networks, identified in a previous study [Altuve, A., Silchenko, S., Lee, K.-H., Kuczera, K., Terzyan, S., Zhang, X., Benson, D. R., and Rivera, M. (2001) Biochemistry 40, 9469-9483], encompasses the side chains of Ala-18, Ile-32, Leu-36, and Leu-47, whereas a second hydrophobic network, identified as part of this work, encompasses the side chains of Ile-25, Phe-58, Leu-71, and the heme. The X-ray structure of the A18S/I25L/I32L/L47R/L71S quintuple mutant of rat OM cyt b(5) demonstrates that both hydrophobic networks have been eliminated and that the corresponding structural elements of the Mc isoform have been introduced. The stability of the rat OM mutant proteins studied was found to decrease in the order wild type > I25L > A18S/I32L/L47R > L71S > A18S/I32L/L47R/L71S > 18S/I25L/I32L/L47R/L71S, indicating that the two hydrophobic networks do indeed contribute to the high stability of rat OM cyt b(5) relative to the bovine Mc isoform. Surprisingly, the quintuple mutant of rat OM cyt b(5) is less stable than bovine Mc cyt b(5), even though the former exhibits significantly slower rates of hemin release and hemin reorientation at pH 7.0. However, at pH 5.0 the bovine Mc and rat OM quintuple mutant proteins release hemin at comparable rates, suggesting that one or both of the His axial ligands in the rat OM protein are more resistant to protonation under physiological conditions. Results obtained from chemical denaturation experiments conducted with the apoproteins demonstrated that mutants containing L71S are significantly less stable than bovine Mc apocyt b(5), strongly suggesting that Leu-71 plays a pivotal role in the stabilization of rat OM apocyt b(5), presumably via hydrophobic interactions with Ile-25 and Phe-58. Because comparable interactions are absent in bovine Mc apocyt b(5), which contains Ser at position 71, it must resort to different interactions to stabilize its fold, thus highlighting yet another difference between rat OM and bovine Mc cyt b(5). During the course of these investigations we also discovered that rat OM cyt b(5) can be made to strongly favor hemin orientational isomer A (I32L) or isomer B (L71S) with a single point mutation and that release of hemin orientational isomers A and B can be kinetically resolved in certain rat OM mutants.


Subject(s)
Amino Acids/chemistry , Carrier Proteins/chemical synthesis , Cytochromes b5/chemical synthesis , Hemeproteins/chemical synthesis , Hemin/chemistry , Intracellular Membranes/enzymology , Microsomes, Liver/enzymology , Mitochondria, Liver/enzymology , Protein Engineering/methods , Amino Acid Sequence , Amino Acid Substitution/genetics , Amino Acids/genetics , Animals , Carrier Proteins/genetics , Cattle , Crystallography, X-Ray , Cytochromes b5/genetics , Enzyme Stability/genetics , Guanidine/chemistry , Heme-Binding Proteins , Hemeproteins/genetics , Hemin/genetics , Hydrophobic and Hydrophilic Interactions , Isoenzymes/chemical synthesis , Isoenzymes/genetics , Kinetics , Mitochondria, Liver/genetics , Molecular Sequence Data , Mutagenesis, Site-Directed , Protein Denaturation , Rats
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