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1.
Article in English, Spanish | MEDLINE | ID: mdl-38960062

ABSTRACT

INTRODUCTION AND OBJECTIVES: Long-term use of an indwelling catheter is associated with complications such as catheter encrustation and infection. Canoxidin® is a novel oral treatment that can potentially prevent catheter encrustation, as it contains a urine acidifier and a combination of two crystallization inhibitors. This study aimed to evaluate the effects of Canoxidin® on catheter encrustation in patients with indwelling Foley catheters. PATIENTS AND METHODS: This was a single-center, double-blind, randomized, placebo-controlled study. Neuro-urology patients aged ≥18 years with an indwelling catheter (urethral or suprapubic) were randomized to treatment consisting of either Canoxidin® or placebo for one month. Foley catheters (two per patient, one before treatment and one after treatment) were removed for analysis of the presence and degree of encrustation. RESULTS: A total of 40 patients were enrolled and randomized, 28 of whom had analyzable catheters (13 assigned to Canoxidin® and 15 assigned to placebo). The patients had a mean age of 51.8 years, and eight (28.6%) were female. Two patients (13.3%) in the placebo group and eight patients (61.5%) in the Canoxidin® group experienced an improvement (less encrustation). There was a significant association between Canoxidin® and improvement (odds ratio: 10.4, 95% confidence interval: 1.6 to 66.9, P = 0.016). No adverse effects attributable to the treatment were reported. CONCLUSIONS: The overall rate of catheter encrustation was high among those with indwelling Foley catheters. One-month treatment with Canoxidin® reduced the formation of these encrustations, with an excellent short-term safety profile.

2.
Sci Total Environ ; 538: 152-61, 2015 Dec 15.
Article in English | MEDLINE | ID: mdl-26298258

ABSTRACT

This research aimed to assess serum concentrations of a group of persistent organic pollutants (POPs) in a sample of adults recruited in four different regions from Spain and to assess socio-demographic, dietary, and lifestyle predictors of the exposure. The study population comprised 312 healthy adults selected from among controls recruited in the MCC-Spain multicase-control study. Study variables were collected using standardized questionnaires, and pollutants were analyzed by means of gas chromatography with electron capture detection. Multivariable analyses were performed to identify predictors of log-transformed pollutant concentrations, using combined backward and forward stepwise multiple linear regression models. Detection rates ranged from 89.1% (hexachlorobenzene, HCB) to 93.6% (Polychlorinated biphenyl-153 [PCB-153]); p,p'-dichlorodiphenyldichloroethylene (p,p'-DDE) showed the highest median concentrations (1.04ng/ml), while HCB showed the lowest (0.24ng/ml). In the multivariable models, age was positively associated with HCB, p,p'-DDE, and PCB-180. BMI was associated positively with p,p'-DDE but negatively with PCB-138. Total accumulated time residing in an urban area was positively associated with PCB-153 concentrations. The women showed higher HCB and lower p,p'-DDE concentrations versus the men. Notably, POP exposure in our study population was inversely associated with the breastfeeding received by participants and with the number of pregnancies of their mothers but was not related to the participants' history of breastfeeding their children or parity. Smoking was negatively associated with HCB and PCB-153 concentrations. Consumption of fatty foods, including blue fish, was in general positively associated with POP levels. Although POP environmental levels are declining worldwide, there is a need for the continuous monitoring of human exposure in the general population. The results of the present study confirm previous findings and point to novel predictors of long-term exposure to persistent organic pollutants.


Subject(s)
Environmental Exposure/statistics & numerical data , Environmental Pollutants/blood , Adult , Diet/statistics & numerical data , Environmental Exposure/analysis , Female , Humans , Male , Spain
3.
Environ Res ; 120: 63-70, 2013 Jan.
Article in English | MEDLINE | ID: mdl-23140988

ABSTRACT

Heavy metals are environmental contaminants with properties known to be toxic for wildlife and humans. Despite strong concerns about their harmful effects, little information is available on intrauterine exposure in humans. The aim of this study was to evaluate prenatal exposure to As, Cd, Cr, Hg, Mn, and Pb and its association with maternal factors in a population-based mother-child cohort in Southern Spain. Between 2000 and 2002, 700 pregnant women were recruited and 137 placentas from the cohort were randomly selected and analyzed for the selected metals by atomic absorption. Maternal sociodemographic and lifestyle factors were obtained by questionnaire after delivery. Bivariate analysis and multivariate linear regression were performed. Cd and Mn concentrations were detected in all placentas, while Cr, Pb, and Hg were found in 98.5%, 35.0%, and 30.7% of samples, respectively. The highest concentrations were observed for Pb (mean: 94.80 ng/g wet weight of placenta), followed by Mn (63.80 ng/g), Cr (63.70 ng/g), Cd (3.45 ng/g), and Hg (0.024 ng/g). Arsenic was not detected in any sample. Gestational age and smoking during pregnancy were associated with placental Cd concentrations, while no factor appeared to influence concentrations of Cr, Hg, Mn, or Pb. In comparison to results of European studies, these concentrations are in a low-intermediate position. Studies are required to investigate the factors contributing to early exposure to heavy metals and to determine how placental transfer of these toxic compounds may affect children's health.


Subject(s)
Maternal Exposure/statistics & numerical data , Metals, Heavy/analysis , Placenta/chemistry , Adolescent , Adult , Cohort Studies , Female , Humans , Infant, Newborn , Pregnancy , Spain , Young Adult
4.
Br J Radiol ; 85(1018): 1398-406, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22972973

ABSTRACT

OBJECTIVE: We propose and study a new model aimed at describing the low-dose hyper-radiosensitivity phenomenon appearing in the survival curves of different cell lines. METHODS: The model uses the induced repair assumption, considering that the critical dose at which this mechanism begins to act varies from cell to cell in a given population. The model proposed is compared with the linear-quadratic model and the modified linear-quadratic model, which is commonly used in literature and in which the induced repair is taken into account in a heuristic way. The survival curve for the MCF-7 line of human breast cancer is measured at low absorbed doses and the uncertainties in these doses are estimated using thermoluminiscent dosemeters. RESULTS: It is shown that these multicellular spheroids present low-dose hyper-radiosensitivity. The new model permits an accurate description of the data of two human cell lines (previously published) and of the multicellular spheroids of the MCF-7 line here measured. CONCLUSION: The model shows enough flexibility to account for data with very different characteristics and considers in a faithful way the hypothesis of the repair induction.


Subject(s)
Breast Neoplasms/radiotherapy , Radiation Tolerance , Spheroids, Cellular/radiation effects , Cell Enlargement/radiation effects , Cell Survival/radiation effects , Dose-Response Relationship, Radiation , Female , Humans , Models, Biological , Radiotherapy Dosage , Tumor Cells, Cultured
5.
Clin Microbiol Infect ; 18(9): E347-54, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22738232

ABSTRACT

Antibiotic-resistant bacteria have emerged due to the selective pressure of antimicrobial use in humans and animals. Water plays an important role in dissemination of these organisms among humans, animals and the environment. We studied the antibiotic resistance patterns among 493 Escherichia coli isolates from different aquatic environmental sources collected from October 2008 to May 2009 in León, Nicaragua. High levels of antibiotic resistance were found in E. coli isolates in hospital sewage water and in eight of 87 well-water samples. Among the resistant isolates from the hospital sewage, ampicillin, chloramphenicol, ciprofloxacin, nalidixic acid, trimethoprim-sulphamethoxazole was the most common multi-resistance profile. Among the resistant isolates from the wells, 19% were resistant to ampicillin, ceftazidime, ceftriaxone, cefotaxime, chloramphenicol, ciprofloxacin, gentamicin, nalidixic acid and trimethoprim-sulphamethoxazole. E. coli producing ESBL and harbouring bla(CTX-M) genes were detected in one of the hospital sewage samples and in 26% of the resistant isolates from the well-water samples. The bla(CTX-M-9) group was more prevalent in E. coli isolates from the hospital sewage samples and the bla(CTX-M-1) group was more prevalent in the well-water samples.


Subject(s)
Anti-Bacterial Agents/pharmacology , Drug Resistance, Bacterial , Escherichia coli/drug effects , Escherichia coli/isolation & purification , Sewage/microbiology , Wastewater/microbiology , Bacterial Proteins/genetics , Drinking Water/microbiology , Escherichia coli/classification , Escherichia coli/genetics , Hospitals , Humans , Microbial Sensitivity Tests , Nicaragua , Random Amplified Polymorphic DNA Technique , Water Microbiology , beta-Lactamases/genetics
6.
Int J Biol Macromol ; 48(4): 603-6, 2011 May 01.
Article in English | MEDLINE | ID: mdl-21300087

ABSTRACT

Different Andean crops were used to obtain starches not previously reported in literature as raw material for the production of biodegradable polymers. The twelve starches obtained were used to prepare biodegradable films by casting. Water and glycerol were used as plasticizers. The mechanical properties of the starch based films were assessed by means of tensile tests. Compost tests and FTIR tests were carried out to assess biodegradability of films. The results show that the mechanical properties (UTS, Young's modulus and elongation at break) of starch based films strongly depend on the starch source used for their production. We found that all the starch films prepared biodegrade following a three stage process and that the weight loss rate of all the starch based films tested was higher than the weight loss rate of the cellulose film used as control.


Subject(s)
Crops, Agricultural/chemistry , Plastics/chemical synthesis , Starch/isolation & purification , Biodegradation, Environmental , Materials Testing , Peru , Plastics/chemistry , Spectroscopy, Fourier Transform Infrared , Starch/chemistry , Tensile Strength
7.
Ars pharm ; 51(supl.3): 811-822, jul. 2010. tab
Article in Spanish | IBECS | ID: ibc-99535

ABSTRACT

Introducción: En el concepto de disruptor endocrino se incluye un amplio grupo de compuestos químicos, con diversas estructuras moleculares, que comparten su capacidad de interferir sobre elsistema hormonal. Los disruptores endocrinos están presentes en útiles y elementos de uso cotidiano, desde plásticos, papel reciclado a plaguicidas y cosméticos. Numerosos estudios han demostrado efectos adversos sobre la salud humana derivados de la exposición a disruptores endocrinos, como alteraciones reproductivas y aumento de ciertos tipos de cáncer. Objetivo: Recopilar información acerca del grado de exposición de la población general española a disruptores endocrinos. Metodología: Revisión sistemática de todas las publicaciones científicas de los últimos 5 años acerca de exposición humana a disruptores endocrinos, en muestras de población general española. Discusión: De la revisión realizada se deduce que la población española está expuesta de forma frecuente a disruptores endocrinos, ya que se encuentran niveles detectables de estos compuestos en diferentes matrices biológicas de diversos grupos de población. La progresiva incorporación de nuevas sustancias en el mercado, así como la falta de estudios científicos que evalúen la incertidumbre entorno al efecto combinado de múltiples residuos, hacen que la exposición humana a estos compuestos continúe siendo un problema para la salud pública(AU)


Introduction: Endocrine disruptors are a wide group of chemicals, with diverse structures, capable of interfering with the endocrine system. These chemicals are present in several items, such as plastics, recycled paper, pesticides and cosmetics. Several studies have reported adverse health effects derived from the exposure to endocrine disruptors, e.g. reproductive disorders and higher rate of certain types of cancer. Objective: To gather information concerning the exposure of the Spanish general population to endocrine disruptors. Methodology: Systematic review of the publications indexed in the last 5 years concerning human exposure to endocrine disruptors in samples of general population from Spain. Discussion/Conclusions: From this review, we concluded that the Spanish population is frequently exposed to endocrine disruptors, due to the presence of detectable levels of these chemicals indifferent samples of population. The introduction of new substances in the market, as well as the lack of scientific studies that explore the combined effect of multiple chemicals, make the exposure aproblem for Public Health(AU)


Subject(s)
Humans , Male , Female , /administration & dosage , /therapeutic use , /metabolism , /pharmacology , /pharmacokinetics , Public Health/methods , Public Health/trends
8.
Clin. transl. oncol. (Print) ; 12(6): 453-455, jun. 2010. ilus
Article in English | IBECS | ID: ibc-124097

ABSTRACT

The presentation of intracranial metastases from Hodgkin's lymphoma is an infrequent event that worsens clinical outcome. A case of Hodgkin's lymphoma relapse in the cerebellum is described in a 70-year-old woman with a previously treated stage IVA Hodgkin's lymphoma. Diagnostic workup and treatment strategies for central nervous system relapses are reviewed and discussed. A combination of surgery, radiotherapy and occasionally chemotherapy remains the most appropriate approach to intracranial Hodgkin's lymphoma (AU)


Subject(s)
Humans , Male , Aged , Hodgkin Disease/pathology , Cerebellar Neoplasms/epidemiology , Cerebellar Neoplasms/secondary , Hodgkin Disease/diagnosis , Hodgkin Disease/genetics , Recurrence , Cerebellar Diseases/pathology , Cerebellar Neoplasms/diagnosis , Cerebellar Neoplasms/pathology
9.
J Chemother ; 22(1): 25-9, 2010 Feb.
Article in English | MEDLINE | ID: mdl-20227989

ABSTRACT

The aim of this study was to identify the bacteria causing neonatal septicemia in a neonatal intensive care unit (NICU) in León, Nicaragua and its relation with bacteria isolated from the environment at the NICU. Our data showed that 74% (34/46) of the bacteria related to newborns with septicemia were Gram-negative and highly resistant to beta-lactams (>85%) and aminoglycosides (80%), leading to treatment failure in 10 neonates with fatal outcome. Although, the prevalence of Gram-positive bacteria (26%) was lower than Gram-negative bacteria, Staphylococcus epidermidis was related to the death of three newborns. No clonal similarity was found among Enterobacter cloacae , Escherichia coli and Serratia liquefaciens isolated from the neonates with septicemia and the NICU environment. However, in order to improve the outcome for neonates with septicemia, infection control practices and appropriate empirical therapy should be considered to reduce the high prevalence of extended-spectrum beta-lactamase (ESBL)-producing Gram-negative bacteria isolated from neonates with septicemia (80%) and from the NICU environment (34%).


Subject(s)
Bacteremia/microbiology , Drug Resistance, Bacterial , Gram-Negative Bacteria/drug effects , Gram-Positive Bacteria/drug effects , Bacteremia/etiology , Female , Humans , Infant, Newborn , Intensive Care Units, Neonatal , Male , Microbial Sensitivity Tests , Nicaragua , Polymerase Chain Reaction , Risk Factors , beta-Lactamases/genetics
11.
Genesis ; 30(3): 110-3, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11477685

ABSTRACT

Morpholino (MO) based inhibition of translational initiation represents an attractive methodology to eliminate gene function during Xenopus development (Heasman et al., 2000). However, the degree to which a given target protein can be eliminated and the longevity of this effect during embryogenesis has not been documented. To examine the efficacy of MOs, we have used transgenic Xenopus lines that harbour known numbers of integrations of a GFP reporter under the control of the ubiquitous and highly expressed CMV promoter (Fig. 1a). In addition we have investigated the longevity of the inhibitory effect by using transgenic lines expressing GFP specifically in the lens of tadpoles. These transgenic lines represent the ideal control for the technique as the promoters are highly expressed and GFP can be easily detected by fluorescence and immunoblotting. Moreover, as GFP has no function in development, the levels of inhibition can be tested in an otherwise normal individual. Here we report that MOs are able to efficiently and specifically inhibit the translation of GFP in transgenic lines from Xenopus laevis and Xenopus tropicalis and the inhibitory effect is long-lived, lasting into the tadpole stages. genesis 30:110--113, 2001.


Subject(s)
Morpholines/metabolism , Oligonucleotides, Antisense/metabolism , Protein Biosynthesis , Xenopus laevis/growth & development , Xenopus laevis/genetics , Xenopus/growth & development , Xenopus/genetics , Animals , Animals, Genetically Modified , Crystallins/genetics , Embryo, Nonmammalian/embryology , Embryo, Nonmammalian/metabolism , Female , Gene Expression Regulation, Developmental , Genes, Reporter/genetics , Green Fluorescent Proteins , Larva/genetics , Larva/growth & development , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Male , Oligonucleotides, Antisense/genetics , Promoter Regions, Genetic/genetics , Xenopus/embryology , Xenopus laevis/embryology
12.
Genes Dev ; 15(9): 1152-66, 2001 May 01.
Article in English | MEDLINE | ID: mdl-11331610

ABSTRACT

Signal transduction through the FGF receptor is essential for the specification of the vertebrate body plan. Blocking the FGF pathway in early Xenopus embryos inhibits mesoderm induction and results in truncation of the anterior-posterior axis. The Drosophila gene sprouty encodes an antagonist of FGF signaling, which is transcriptionally induced by the pathway, but whose molecular functions are poorly characterized. We have cloned Xenopus sprouty2 and show that it is expressed in a similar pattern to known FGFs and is dependent on the FGF/Ras/MAPK pathway for its expression. Overexpression of Xsprouty2 in both embryos and explant assays results in the inhibition of the cell movements of convergent extension. Although blocking FGF/Ras/MAPK signaling leads to an inhibition of mesodermal gene expression, these markers are unaffected by Xsprouty2, indicating that mesoderm induction and patterning occurs normally in these embryos. Finally, using Xenopus oocytes we show that Xsprouty2 is an intracellular antagonist of FGF-dependent calcium signaling. These results provide evidence for at least two distinct FGF-dependent signal transduction pathways: a Sprouty-insensitive Ras/MAPK pathway required for the transcription of most mesodermal genes, and a Sprouty-sensitive pathway required for coordination of cellular morphogenesis.


Subject(s)
Body Patterning , Embryonic Induction , Fibroblast Growth Factors/metabolism , Nerve Tissue Proteins/metabolism , Xenopus laevis/embryology , Amino Acid Sequence , Animals , Calcium , Embryo, Nonmammalian , Gastrula , Gene Expression Regulation, Developmental , Mesoderm , Mitogen-Activated Protein Kinases/metabolism , Molecular Sequence Data , Mutation , Nerve Tissue Proteins/genetics , Phosphorylation , Receptors, Fibroblast Growth Factor/genetics , Receptors, Fibroblast Growth Factor/metabolism , Signal Transduction , Xenopus laevis/genetics
13.
J Bacteriol ; 183(12): 3623-30, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11371526

ABSTRACT

Formation of spores from vegetative bacteria by Bacillus subtilis is a primitive system of cell differentiation. Critical to spore formation is the action of a series of sporulation-specific RNA polymerase sigma factors. Of these, sigma(F) is the first to become active. Few genes have been identified that are transcribed by RNA polymerase containing sigma(F) (E-sigma(F)), and only two genes of known function are exclusively under the control of E-sigma(F), spoIIR and spoIIQ. In order to investigate the features of promoters that are recognized by E-sigma(F), we studied the effects of randomizing sequences for the -10 and -35 regions of the promoter for spoIIQ. The randomized promoter regions were cloned in front of a promoterless copy of lacZ in a vector designed for insertion by double crossover of single copies of the promoter-lacZ fusions into the amyE region of the B. subtilis chromosome. This system made it possible to test for transcription of lacZ by E-sigma(F) in vivo. The results indicate a weak sigma(F)-specific -10 consensus, GG/tNNANNNT, of which the ANNNT portion is common to all sporulation-associated sigma factors, as well as to sigma(A). There was a rather stronger -35 consensus, GTATA/T, of which GNATA is also recognized by other sporulation-associated sigma factors. The looseness of the sigma(F) promoter requirement contrasts with the strict requirement for sigma(A)-directed promoters of B. subtilis. It suggests that additional, unknown, parameters may help determine the specificity of promoter recognition by E-sigma(F) in vivo.


Subject(s)
Bacillus subtilis/genetics , Bacterial Proteins/metabolism , Promoter Regions, Genetic , Sigma Factor/metabolism , Transcription Factors , Amino Acid Sequence , Artificial Gene Fusion , Bacillus subtilis/metabolism , Bacterial Proteins/genetics , Base Sequence , Consensus Sequence , Genes, Reporter , Molecular Sequence Data , Oligonucleotides/chemistry , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid , Sigma Factor/chemistry , Sigma Factor/genetics , beta-Galactosidase/metabolism
14.
Dev Biol ; 232(1): 191-203, 2001 Apr 01.
Article in English | MEDLINE | ID: mdl-11254357

ABSTRACT

The heart develops from a linear tubular precursor, which loops to the right and undergoes terminal differentiation to form the multichambered heart. Heart looping is the earliest manifestation of left-right asymmetry and determines the eventual heart situs. The signalling processes that impart laterality to the unlooped heart tube and thus allow the developing organ to interpret the left-right axis of the embryo are poorly understood. Recent experiments in zebrafish led to the suggestion that bone morphogenetic protein 4 (BMP4) may impart laterality to the developing heart tube. Here we show that in Xenopus, as in zebrafish, BMP4 is expressed predominantly on the left of the linear heart tube. Furthermore we demonstrate that ectopic expression of Xenopus nodal-related protein 1 (Xnr1) RNA affects BMP4 expression in the heart, linking asymmetric BMP4 expression to the left-right axis. We show that transgenic embryos overexpressing BMP4 bilaterally in the heart tube tend towards a randomisation of heart situs in an otherwise intact left-right axis. Additionally, inhibition of BMP signalling by expressing noggin or a truncated, dominant negative BMP receptor prevents heart looping but allows the initial events of chamber specification and anteroposterior morphogenesis to occur. Thus in Xenopus asymmetric BMP4 expression links heart development to the left-right axis, by being both controlled by Xnr1 expression and necessary for heart looping morphogenesis.


Subject(s)
Bone Morphogenetic Proteins/physiology , Heart/embryology , Myocardium/metabolism , Xenopus laevis/embryology , Animals , Bone Morphogenetic Protein 4 , Intracellular Signaling Peptides and Proteins , Morphogenesis , Transforming Growth Factor beta/physiology , Transgenes , Xenopus Proteins , Zebrafish Proteins
15.
Dev Biol ; 238(1): 168-84, 2001 Oct 01.
Article in English | MEDLINE | ID: mdl-11784002

ABSTRACT

In vertebrates, BMP signaling before gastrulation suppresses neural development. Later in development, BMP signaling specifies a dorsal and ventral fate in the forebrain and dorsal fate in the spinal cord. It is therefore possible that a change in the competence of the ectoderm to respond to BMP signaling occurs at some point in development. We report that exposure of the anterior neural plate to BMP4 before gastrulation causes suppression of all neural markers tested. To determine the effects of BMP4 after gastrulation, we misexpressed BMP4 using a Pax-6 promoter fragment in transgenic frog embryos and implanted beads soaked in BMP4 in the anterior neural plate. Suppression of most anterior neural markers was observed. We conclude that most neural genes continue to require suppression of BMP signaling into the neurula stages. Additionally, we report that BMP4 and BMP7 are abundantly expressed in the prechordal mesoderm of the neurula stage embryo. This poses the paradox of how the expression of most neural genes is maintained if they can be inhibited by BMP signaling. We show that at least one gene in the anterior neural plate suppresses the response of the ectoderm to BMP signaling. We propose that the suppressive effect of BMP signaling on the expression of neural genes coupled with localized suppressors of BMP signaling result in the fine-tuning of gene expression in the anterior neural plate.


Subject(s)
Animals, Genetically Modified , Bone Morphogenetic Proteins/metabolism , Embryo, Nonmammalian/physiology , Gastrula/physiology , Neurons/physiology , Signal Transduction , Transforming Growth Factor beta , Xenopus Proteins , Animals , Base Sequence , Bone Morphogenetic Protein 4 , Bone Morphogenetic Protein 7 , Bone Morphogenetic Proteins/biosynthesis , DNA/metabolism , Ectoderm/metabolism , Eye Proteins , Green Fluorescent Proteins , Homeodomain Proteins/genetics , In Situ Hybridization , Luminescent Proteins/metabolism , Mesoderm/metabolism , Molecular Sequence Data , Neural Crest , Neurons/metabolism , PAX6 Transcription Factor , Paired Box Transcription Factors , Promoter Regions, Genetic , Protein Structure, Tertiary , RNA/metabolism , RNA, Messenger/metabolism , Recombinant Fusion Proteins/metabolism , Repressor Proteins , Sequence Homology, Nucleic Acid , Time Factors , Transcription Factors/metabolism , Transgenes , Xenopus
16.
Nat Biotechnol ; 18(2): 181-6, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10657125

ABSTRACT

The SCL gene encodes a highly conserved bHLH transcription factor with a pivotal role in hemopoiesis and vasculogenesis. We have sequenced and analyzed 320 kb of genomic DNA composing the SCL loci from human, mouse, and chicken. Long-range sequence comparisons demonstrated multiple peaks of human/mouse homology, a subset of which corresponded precisely with known SCL enhancers. Comparisons between mammalian and chicken sequences identified some, but not all, SCL enhancers. Moreover, one peak of human/mouse homology (+23 region), which did not correspond to a known enhancer, showed significant homology to an analogous region of the chicken SCL locus. A transgenic Xenopus reporter assay was established and demonstrated that the +23 region contained a new neural enhancer. This combination of long-range comparative sequence analysis with a high-throughput transgenic bioassay provides a powerful strategy for identifying and characterizing developmentally important enhancers.


Subject(s)
Conserved Sequence , DNA-Binding Proteins/genetics , Enhancer Elements, Genetic , Proto-Oncogene Proteins , Transcription Factors/genetics , Vertebrates/genetics , Xenopus Proteins , Amino Acid Sequence , Animals , Animals, Genetically Modified , Base Sequence , Basic Helix-Loop-Helix Transcription Factors , Chickens , Helix-Loop-Helix Motifs , Humans , Mice , Molecular Sequence Data , Rhombencephalon/embryology , Sequence Homology, Amino Acid , T-Cell Acute Lymphocytic Leukemia Protein 1 , Xenopus
17.
Curr Biol ; 9(20): 1195-8, 1999 Oct 21.
Article in English | MEDLINE | ID: mdl-10531033

ABSTRACT

The frog transgenesis technique ultimately promises to make mutagenesis possible through random insertion of plasmid DNA into the genome. This study was undertaken to evaluate whether a gene trap approach combined with transgenesis would be appropriate for performing insertional mutagenesis in Xenopus embryos. Firstly, we confirmed that the transgenic technique results in stable integration into the genome and that transmission through the germline occurs in the expected Mendelian fashion. Secondly, we developed several gene trap vectors, using the green fluorescent protein (GFP) as a marker. Using these vectors, we trapped several genes in Xenopus laevis that are expressed in a spatially restricted manner, including expression in the epiphysis, the olfactory bulb and placodes, the eyes, ear, brain, muscles, tail and intestine. Finally, we cloned one of the trapped genes using 5' rapid amplification of cDNA ends polymerase chain reaction (RACE PCR). These results suggest that the transgenic technique combined with a gene trap approach might provide a powerful method for generating mutations in endogenous genes in Xenopus.


Subject(s)
Genetic Techniques , Xenopus/genetics , Amino Acid Sequence , Animals , Animals, Genetically Modified , Base Sequence , Crystallins/genetics , DNA, Recombinant/genetics , Gene Expression , Genetic Vectors , Green Fluorescent Proteins , Luminescent Proteins/genetics , Molecular Sequence Data , Mutagenesis, Insertional , Polymerase Chain Reaction/methods , Recombinant Fusion Proteins/genetics , Xenopus/embryology
20.
FEMS Microbiol Lett ; 153(1): 135-9, 1997 Aug 01.
Article in English | MEDLINE | ID: mdl-9252583

ABSTRACT

A plasmid is described for Bacillus subtilis that facilitates replacement of the widely used neomycin resistance gene (neo) with a spectinomycin resistance (spcE) gene. A second plasmid is described that facilitates replacement of spcS, associated with mini-Tn10 mutagenesis in B. subtilis, with neo. These plasmids can also function as integrative vectors for B. subtilis. They expand the scope of strain construction and gene analysis in B. subtilis.


Subject(s)
Bacillus subtilis/genetics , Genes, Bacterial/genetics , Genetic Vectors/genetics , Phosphotransferases (Alcohol Group Acceptor)/genetics , R Factors/genetics , Anti-Bacterial Agents/pharmacology , Bacillus subtilis/drug effects , Cloning, Molecular/methods , Kanamycin Kinase , Neomycin/pharmacology , Spectinomycin/pharmacology , Transformation, Bacterial
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