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2.
BMC Genomics ; 16: 626, 2015 Sep 07.
Article in English | MEDLINE | ID: mdl-26343138

ABSTRACT

Data availability expectations have changed over the years in scientific publishing, nowhere more so than in the field of genomics. This field has spearheaded openness and transparency via public and structured deposition of data. BMC Genomics strongly encourages deposition and unrestricted availability of all primary data underlying research studies both as a way of ensuring reproducibility and standardisation, but also as part of overall community-driven expectation on data deposition and sharing. With funders and publishers moving towards more explicit mandates (regarding data availability), we examined the current barriers to unrestricted availability of data and explored different scenarios in which commercial agreements might run contrary to scientific convention and data sharing policies. In this editorial, Ross Tellam (CSIRO, Australia), Paul Rushton (Texas A&M AgriLife Research) and Peter Schuerman (University of California, Merced), give their views on the importance of data sharing and examine the current challenges in research fields like crop and livestock genomics, where often it is necessary to integrate the interests of academic and commercial stakeholders. We discuss the current approaches, highlight the importance of community-driven standards, and propose ways forward.


Subject(s)
Information Dissemination , Capital Financing/economics , Capital Financing/organization & administration , Databases, Factual , Humans , Information Dissemination/legislation & jurisprudence , Information Dissemination/methods , Privacy
3.
Nat Commun ; 6: 8302, 2015 Sep 24.
Article in English | MEDLINE | ID: mdl-26400647

ABSTRACT

The functional assembly of the synaptic release machinery is well understood; however, how signalling factors modulate this process remains unknown. Recent studies suggest that Wnts play a role in presynaptic function. To examine the mechanisms involved, we investigated the interaction of release machinery proteins with Dishevelled-1 (Dvl1), a scaffold protein that determines the cellular locale of Wnt action. Here we show that Dvl1 directly interacts with Synaptotagmin-1 (Syt-1) and indirectly with the SNARE proteins SNAP25 and Syntaxin (Stx-1). Importantly, the interaction of Dvl1 with Syt-1, which is regulated by Wnts, modulates neurotransmitter release. Moreover, presynaptic terminals from Wnt signalling-deficient mice exhibit reduced release probability and are unable to sustain high-frequency release. Consistently, the readily releasable pool size and formation of SNARE complexes are reduced. Our studies demonstrate that Wnt signalling tunes neurotransmitter release and identify Syt-1 as a target for modulation by secreted signalling proteins.


Subject(s)
Adaptor Proteins, Signal Transducing/genetics , Neurons/metabolism , Neurotransmitter Agents/metabolism , Phosphoproteins/genetics , Synaptic Vesicles/metabolism , Synaptosomal-Associated Protein 25/metabolism , Synaptotagmin I/metabolism , Syntaxin 1/metabolism , Wnt Signaling Pathway , Adaptor Proteins, Signal Transducing/metabolism , Animals , Dishevelled Proteins , Fluorescent Antibody Technique , Hippocampus/cytology , Hippocampus/metabolism , Immunoprecipitation , Mice , Mice, Knockout , Microscopy, Electron , Patch-Clamp Techniques , Phosphoproteins/metabolism , Rats , Rats, Sprague-Dawley , Synaptic Transmission , Wnt Proteins/genetics
4.
Proc Natl Acad Sci U S A ; 108(26): 10732-7, 2011 Jun 28.
Article in English | MEDLINE | ID: mdl-21670302

ABSTRACT

The balance between excitatory and inhibitory synapses is crucial for normal brain function. Wnt proteins stimulate synapse formation by increasing synaptic assembly. However, it is unclear whether Wnt signaling differentially regulates the formation of excitatory and inhibitory synapses. Here, we demonstrate that Wnt7a preferentially stimulates excitatory synapse formation and function. In hippocampal neurons, Wnt7a increases the number of excitatory synapses, whereas inhibitory synapses are unaffected. Wnt7a or postsynaptic expression of Dishevelled-1 (Dvl1), a core Wnt signaling component, increases the frequency and amplitude of miniature excitatory postsynaptic currents (mEPSCs), but not miniature inhibitory postsynaptic currents (mIPSCs). Wnt7a increases the density and maturity of dendritic spines, whereas Wnt7a-Dvl1-deficient mice exhibit defects in spine morphogenesis and mossy fiber-CA3 synaptic transmission in the hippocampus. Using a postsynaptic reporter for Ca(2+)/Calmodulin-dependent protein kinase II (CaMKII) activity, we demonstrate that Wnt7a rapidly activates CaMKII in spines. Importantly, CaMKII inhibition abolishes the effects of Wnt7a on spine growth and excitatory synaptic strength. These data indicate that Wnt7a signaling is critical to regulate spine growth and synaptic strength through the local activation of CaMKII at dendritic spines. Therefore, aberrant Wnt7a signaling may contribute to neurological disorders in which excitatory signaling is disrupted.


Subject(s)
Calcium-Calmodulin-Dependent Protein Kinase Type 2/metabolism , Dendrites , Proto-Oncogene Proteins/metabolism , Signal Transduction , Synapses/physiology , Wnt Proteins/metabolism , Animals , Calcium-Calmodulin-Dependent Protein Kinase Type 2/antagonists & inhibitors , Cells, Cultured , Hippocampus/cytology , Hippocampus/enzymology , Hippocampus/metabolism , Mice , Mice, Mutant Strains , Morphogenesis , Protein Kinase Inhibitors/pharmacology , Proto-Oncogene Proteins/genetics , Rats , Rats, Sprague-Dawley , Wnt Proteins/genetics
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