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1.
J Chem Phys ; 148(21): 214309, 2018 Jun 07.
Article in English | MEDLINE | ID: mdl-29884035

ABSTRACT

We report the absorption profile of isolated Flavin Adenine Dinucleotide (FAD) mono-anions recorded using photo-induced dissociation action spectroscopy. In this charge state, one of the phosphoric acid groups is deprotonated and the chromophore itself is in its neutral oxidized state. These measurements cover the first four optical transitions of FAD with excitation energies from 2.3 to 6.0 eV (210-550 nm). The S0 → S2 transition is strongly blue shifted relative to aqueous solution, supporting the view that this transition has a significant charge-transfer character. The remaining bands are close to their solution-phase positions. This confirms that the large discrepancy between quantum chemical calculations of vertical transition energies and solution-phase band maxima cannot be explained by solvent effects. We also report the luminescence spectrum of FAD mono-anions in vacuo. The gas-phase Stokes shift for S1 is 3000 cm-1, which is considerably larger than any previously reported for other molecular ions and consistent with a significant displacement of the ground and excited state potential energy surfaces. Consideration of the vibronic structure is thus essential for simulating the absorption and luminescence spectra of flavins.


Subject(s)
Absorption, Physicochemical , Flavin-Adenine Dinucleotide/chemistry , Luminescent Measurements , Flavin Mononucleotide/chemistry
2.
Rev Sci Instrum ; 86(6): 063107, 2015 Jun.
Article in English | MEDLINE | ID: mdl-26133828

ABSTRACT

We describe the design of and the first commissioning experiments with a newly constructed electrostatic storage ring named SAPHIRA (Storage Ring in Aarhus for PHoton-Ion Reaction Analysis). With an intense beam of Cu(-) at 4 keV, the storage ring is characterized in terms of the stored ion beam decay rate, the longitudinal spreading of an injected ion bunch, as well as the direct measurements of the transverse spatial distributions under different conditions of storage. The ion storage stability in SAPHIRA was investigated systematically in a selected region of its electrical configuration space.

3.
Phys Chem Chem Phys ; 15(45): 19566-9, 2013 Dec 07.
Article in English | MEDLINE | ID: mdl-24142109

ABSTRACT

The fragmentation, initiated by photoexcitation as well as collisionally-induced excitation, of several retinal chromophores was studied in the gas phase. The chromophore in the protonated Schiff-base form (RPSB), essential for mammalian vision, shows a remarkably selective photoresponse. The selectivity of the gas-phase chromophore is triggered by a series of fast trans to cis isomerizations followed by a Diels-Alder cyclization with subsequent slow statistical fragmentation, leading to one specific fragment ion. The pattern of the final statistical fragmentation may be altered by chemical modifications of the chromophore. We propose that isomerizations play an important role in the photoresponse of gas-phase retinal chromophores and guide internal conversion through conical intersections. The role of protein interactions is then to control the specificity of the photoisomerization in the primary step of vision and possibly to diminish thermal noise by suppressing spontaneous isomerization by heat.


Subject(s)
Gases/chemistry , Photochemical Processes , Protons , Retinaldehyde/chemistry , Isomerism , Schiff Bases/chemistry
4.
Phys Rev Lett ; 109(12): 128101, 2012 Sep 21.
Article in English | MEDLINE | ID: mdl-23005990

ABSTRACT

Photoelectron spectra of the deprotonated green fluorescent protein chromophore have been measured in the gas phase at several wavelengths within and beyond the S(0)-S(1) photoabsorption band of the molecule. The vertical detachment energy (VDE) was determined to be 2.68 ± 0.1 eV. The data show that the first electronically excited state is bound in the Franck-Condon region, and that electron emission proceeds through an indirect (resonant) electron-emission channel within the corresponding absorption band.


Subject(s)
Benzyl Compounds/chemistry , Green Fluorescent Proteins/chemistry , Imidazolines/chemistry , Models, Chemical , Molecular Dynamics Simulation , Photoelectron Spectroscopy/methods
5.
J Chem Phys ; 136(1): 014307, 2012 Jan 07.
Article in English | MEDLINE | ID: mdl-22239781

ABSTRACT

Photodissociation lifetimes and fragment channels of gas-phase, protonated YA(n) (n = 1,2) peptides and their dimers were measured with 266 nm photons. The protonated monomers were found to have a fast dissociation channel with an exponential lifetime of ~200 ns while the protonated dimers show an additional slow dissociation component with a lifetime of ~2 µs. Laser power dependence measurements enabled us to ascribe the fast channel in the monomer and the slow channel in the dimer to a one-photon process, whereas the fast dimer channel is from a two-photon process. The slow (1 photon) dissociation channel in the dimer was found to result in cleavage of the H-bonds after energy transfer through these H-bonds. In general, the dissociation of these protonated peptides is non-prompt and the decay time was found to increase with the size of the peptides. Quantum RRKM calculations of the microcanonical rate constants also confirmed a statistical nature of the photodissociation processes in the dipeptide monomers and dimers. The classical RRKM expression gives a rate constant as an analytical function of the number of active vibrational modes in the system, estimated separately on the basis of the equipartition theorem. It demonstrates encouraging results in predicting fragmentation lifetimes of protonated peptides. Finally, we present the first experimental evidence for a photo-induced conversion of tyrosine-containing peptides into monocyclic aromatic hydrocarbon along with a formamide molecule both found in space.


Subject(s)
Peptides/chemistry , Protons , Dimerization , Monte Carlo Method , Photochemical Processes , Quantum Theory
6.
Acta Anaesthesiol Scand ; 55(9): 1090-7, 2011 Oct.
Article in English | MEDLINE | ID: mdl-22092206

ABSTRACT

BACKGROUND: Morbidly obese patients are at increased risk of hypoxemia during tracheal intubation because of increased frequency of difficult and impossible intubation and a decreased apnea tolerance. In this study, intubation with the GlideScope videolaryngoscope (GS) was compared with the Macintosh direct laryngoscope (DL) in a group of morbidly obese patients. METHODS: One hundred consecutive patients (body mass index ≥ 35 kg/m(2) ) scheduled for bariatric surgery were randomized 1 : 1 to intubation with GS (group GS) or DL (group DL). The primary outcome was intubation time. Secondary outcomes were number of attempts, Cormack-Lehane grade, intubation difficulty scale score (IDS), subjective difficulty of intubation, desaturation, airway bleeding, postoperative sore throat, and hoarseness. Group assignment was not blinded. RESULTS: Intubation in group GS and group DL lasted 48 (22-148) and 32 s (17-209), respectively (median (range); P = 0.0001); median difference 11 s (95% confidence interval 6-17). Laryngoscopic views were better in group GS with Cormack-Lehane grades 1/2/3/4 distributed as 35/13/2/0 vs. 23/13/10/4 in group DL (P = 0.003). IDS scores were significantly lower with GS than with DL. No other statistically significant differences were found. Two cases of failed intubation occurred in group DL vs. none in group GS (non-significant). Both patients were intubated with the GlideScope without problems. CONCLUSION: Intubation of morbidly obese patients with GS was slightly slower than with DL. The increased intubation time was of no clinical consequence as no patients became hypoxemic. Both devices generally performed well in the studied population, but the GS provided better laryngoscopic views and decreased IDS scores.


Subject(s)
Intubation, Intratracheal/instrumentation , Laryngoscopes , Obesity, Morbid/complications , Adult , Female , Humans , Laryngoscopy , Male , Middle Aged , Prospective Studies , Video Recording
7.
Phys Chem Chem Phys ; 12(14): 3486-90, 2010 Apr 14.
Article in English | MEDLINE | ID: mdl-20355289

ABSTRACT

The sub-microsecond dissociation pathways for the protonated and deprotonated forms of adenosine 5'-monophosphate were probed in the gas phase using a linear time of flight spectrometer. The studies show two dissociation pathways for the AMP ions indicating dominant ergodic pathways in the photodissociation of these species. The photofragmentation was determined to be a single photon process for the AMP ions. Photodetachment of the AMP anion excited at 266 nm was not observed, leaving dissociation as the prominent pathway for relaxation of the excess energy in the biomolecule. The photofragments were analysed at the electrostatic ion storage ring (ELISA) and found to be similar to collision induced fragments in the case of anions but different in the case of cations.


Subject(s)
Adenosine Monophosphate/chemistry , Gases/chemistry , Monte Carlo Method , Photochemistry , Static Electricity
8.
Biophys J ; 98(3): 488-92, 2010 Feb 03.
Article in English | MEDLINE | ID: mdl-20141763

ABSTRACT

Spectral tuning in the photoactive yellow protein (PYP) is investigated by performing gas-phase absorption measurements on a PYP-model chromophore with two water molecules hydrogen-bonded to it. The photoabsorption maximum shows an unusually large blue shift of 0.71 eV in going from the bare to the hydrogen-bonded chromophore. It is concluded that several interactions within the PYP protein are mutually cancelling each other, yielding an absorption maximum that is close to the absorption maximum of the bare chromophore. The system breaks apart upon photoexcitation in the gas phase by releasing the two water molecules, leaving the chromophore itself intact. The hydrogen-bonding interactions thus play an important role in stabilizing the gas phase chromophore against photofragmentation. The relaxation dynamics for the breakup process was also studied, and the timescale of relaxation via fragmentation was found to be < 25 ns.


Subject(s)
Bacterial Proteins/chemistry , Gases/chemistry , Hydrogen Bonding , Light , Photoreceptors, Microbial/chemistry , Absorption , Bacterial Proteins/genetics , Coumaric Acids/chemistry , Enzyme-Linked Immunosorbent Assay/instrumentation , Enzyme-Linked Immunosorbent Assay/methods , Kinetics , Models, Molecular , Photoreceptors, Microbial/genetics , Propionates , Spectrum Analysis/instrumentation , Spectrum Analysis/methods , Water/chemistry
9.
Phys Chem Chem Phys ; 11(43): 9996-10002, 2009 Nov 21.
Article in English | MEDLINE | ID: mdl-19865751

ABSTRACT

We report on gas-phase experimental and theoretical studies on the neutral form of the green-fluorescent protein (GFP) chromophore using six different models, each carrying a spectator positive charge. Theoretical studies were carried out to quantify the effect of the spectator charge on the absorption maximum of the true neutral. The study also includes models having the possibility of forming intra-molecular hydrogen bonds, and their effect on the absorption profile is analyzed. The charge redistribution caused by a strong intra-molecular hydrogen bond was found to give rise to a red shift in going from non-hydrogen bonded to hydrogen bonded models. For the non-hydrogen bonded models, the length of the side chain as well as the group carrying the spectator charge, was varied to explore the possibility of shifts in absorption maximum due to these variations. No shifts were observed. The implications of these results in tuning the absorption maximum of the neutral form of the GFP chromophores are discussed.


Subject(s)
Fluorescent Dyes/chemistry , Green Fluorescent Proteins/chemistry , Models, Chemical , Vacuum , Absorption , Hydrogen Bonding , Photochemical Processes
10.
Phys Rev E Stat Nonlin Soft Matter Phys ; 79(1 Pt 1): 011908, 2009 Jan.
Article in English | MEDLINE | ID: mdl-19257070

ABSTRACT

The doubly deprotonated [Asn,Val5] angiopeptide, in the gas phase, was irradiated with 266 nm photons. The time of flight (TOF) of the products formed following photoabsorption, namely, the monoanion and neutral fragments, was recorded with submicrosecond time resolution. Monte Carlo simulations of the TOF of the neutral fragments indicate that the dissociation occurs faster than 100 ns. A similar experiment performed on the Val5 angiopeptide also yielded a dissociation time shorter than 100 ns. We suggest dissociation mechanisms that account for the different number of photons required for the release of CO2.


Subject(s)
Angiotensins/chemistry , Protons , Absorption , Amino Acid Sequence , Carbon Dioxide/chemistry , Monte Carlo Method , Photolysis , Time Factors , Ultraviolet Rays
11.
Biophys J ; 92(1): 201-7, 2007 Jan 01.
Article in English | MEDLINE | ID: mdl-17040991

ABSTRACT

We have studied the gas-phase absorption properties of the green fluorescent protein (GFP) chromophore in its neutral (protonated) charge state in a heavy-ion storage ring. To accomplish this we synthesized a new molecular chromophore with a charged NH(3) group attached to a neutral model chromophore of GFP. The gas-phase absorption cross section of this chromophore molecule as a function of the wavelength is compared to the well-known absorption profile of GFP. The chromophore has a maximum absorption at 415 +/- 5 nm. When corrected for the presence of the charged group attached to the GFP model chromophore, the unperturbed neutral chromophore is predicted to have an absorption maximum at 399 nm in vacuum. This is very close to the corresponding absorption peak of the protein at 397 nm. Together with previous data obtained with an anionic GFP model chromophore, the present data show that the absorption of GFP is primarily determined by intrinsic chromophore properties. In other words, there is strong experimental evidence that, in terms of absorption, the conditions in the hydrophobic interior of this protein are very close to those in vacuum.


Subject(s)
Biophysics/methods , Green Fluorescent Proteins/chemistry , Animals , Ions , Lasers , Light , Models, Chemical , Models, Molecular , Molecular Conformation , Normal Distribution , Protein Structure, Secondary , Protons , Spectrophotometry , Static Electricity , Temperature
12.
Phys Rev Lett ; 96(1): 018304, 2006 Jan 13.
Article in English | MEDLINE | ID: mdl-16486529

ABSTRACT

Photoabsorption studies of 11-cis and all-trans Schiff-base retinal chromophore cations in the gas phase have been performed at the electrostatic ion storage ring in Aarhus. A broad absorption band due to the optically allowed excitation to the first electronically excited singlet state (S1) is observed at around 600 nm. A second "dark" excited state (S2) just below 400 nm is reported for the first time. It is located approximately 1.2 eV above S1 for both chromophores. The S2 state was not visible in a solution measurement where only one highly blueshifted absorption band corresponding to the first excited state was visible. Knowledge of the position of the excited states in retinal is essential for the understanding of the fast photoisomerization in, for example, visual pigments.


Subject(s)
Retinaldehyde/chemistry , Gases , Photochemistry , Schiff Bases/chemistry , Static Electricity
13.
Phys Rev Lett ; 94(22): 223401, 2005 Jun 10.
Article in English | MEDLINE | ID: mdl-16090391

ABSTRACT

Electron scattering on NO-2, NO-2 x (H2O), and NO-2 x (H2O)(2) was performed in two storage rings. We confirm the presence of earlier reported NO2-2 dianion resonances and show that they remain when water is attached. Importantly, hydration tunes the energy: each water molecule lowers the ground state energy by 0.8 +/- 0.3 eV relative to the monoanion. NO2-2 is observed to decay by two-electron emission, possibly in combination with fragmentation. NO(2-)2 x (H2O) mainly decays into NO-2 + H2O + e(-).

14.
Biophys J ; 89(4): 2597-604, 2005 Oct.
Article in English | MEDLINE | ID: mdl-16040745

ABSTRACT

The absorption spectra of two photoactive yellow protein model chromophores have been measured in vacuum using an electrostatic ion storage ring. The absorption spectrum of the isolated chromophore is an important reference for deducing the influence of the protein environment on the electronic energy levels of the chromophore and separating the intrinsic properties of the chromophore from properties induced by the protein environment. In vacuum the deprotonated trans-thiophenyl-p-coumarate model chromophore has an absorption maximum at 460 nm, whereas the photoactive yellow protein absorbs maximally at 446 nm. The protein environment thus only slightly blue-shifts the absorption. In contrast, the absorption of the model chromophore in aqueous solution is significantly blue-shifted (lambda(max) = 395 nm). A deprotonated trans-p-coumaric acid has also been studied to elucidate the effect of thioester formation and phenol deprotonation. The sum of these two changes on the chromophore induces a red shift both in vacuum and in aqueous solution.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/radiation effects , Light , Models, Chemical , Photoreceptors, Microbial/chemistry , Photoreceptors, Microbial/radiation effects , Spectrum Analysis/methods , Computer Simulation , Radiation Dosage , Radiometry , Vacuum
15.
J Chem Phys ; 123(11): 114311, 2005 Sep 15.
Article in English | MEDLINE | ID: mdl-16392563

ABSTRACT

Cross sections for electron-impact detachment and electron-impact dissociation of NCO- and NCS- were measured from about 3 to about 40 eV. The former are found to follow a classical prediction with a threshold energy of 9.1 +/- 0.1 eV for NCO- and 8.9 +/- 0.2 eV for NCS-. When the incoming electron binds to the monoanion, a short-lived dianion complex is formed, which is revealed as a resonance in the cross section. For NCO- a resonance is evident at 9.3 +/- 0.2 eV, which implies that the dianion lies above the monoanion by this amount of energy. In the case of NCS- two resonances are evident at 8.4 +/- 0.2 and 19.0 +/- 0.5 eV, respectively. The low-energy NCS dianion is less unstable than the dianion of NCO, which in turn is less unstable than the CN dianion (10-eV resonance). Thus the resonance shifts down in energy with the increasing size of the anion, a fact which is attributed to a decrease in Coulomb energy between the spatially separated electrons.

16.
Phys Rev Lett ; 93(20): 203201, 2004 Nov 12.
Article in English | MEDLINE | ID: mdl-15600921

ABSTRACT

Electron scattering on stored Pt(CN)2-4 and Pt(CN)2-6 centrosymmetric molecular dianions has been performed at the electrostatic storage ring ELISA. The thresholds for production of neutral particles by electron bombardment were found to be 17.2 and 18.7 eV, respectively. The relatively high thresholds reflect the strong Coulomb repulsion in the incoming channel as well as a high energetic stability of the target electrons. A trianion resonance was identified with a positive energy of 17.0 eV for the Pt(CN)2-4 square-planar complex, while three trianion resonances were identified for the Pt(CN)2-6 octahedral complex with positive energies of 15.3, 18.1, and 20.1 eV.

17.
J Chem Phys ; 121(10): 4642-9, 2004 Sep 08.
Article in English | MEDLINE | ID: mdl-15332895

ABSTRACT

The cross sections for electron scattering on OH-(H2O)n for n = 0-4 were measured from threshold to approximately 50 eV. All detachment cross sections were found to follow the classical prediction given earlier [Phys. Rev. Lett. 74, 892 (1995)] with a threshold energy for electron-impact detachment that increased upon sequential hydration, yielding values in the range from 4.5 eV +/- 0.2 eV for OH- to 12.10 eV +/- 0.5 eV for OH-(H2O)4. For n > or = 1, we found that approximately 80% of the total reaction events lead to electron detachment plus total dissociation of the clusters into the constituent molecules of OH and H2O. Finally, we observed resonances in the cross sections for OH-(H2O)3 and for OH-(H2O)4. The resonances were located at approximately 15 eV and were ascribed to the formation of dianions in excited states.

18.
Phys Rev Lett ; 90(11): 118103, 2003 Mar 21.
Article in English | MEDLINE | ID: mdl-12688970

ABSTRACT

Photoabsorption studies of red fluorescent protein chromophore anions have been performed at the ELISA electrostatic heavy-ion storage ring. The broad absorption band due to electronic excitation of the chromophores is tuned to a longer wavelength (redshifted) by extending the electronic conjugation of the molecule. A clear vibrational progression is resolved with E(vib) approximately 380 and 520 cm(-1) for two different forms of the chromophore. The vibrational modes correspond to collective motions of the entire molecular structure. It is argued that the excited electronic state has an equilibrium configuration far from that of the electronic ground state, i.e., poor Franck Condon overlap.


Subject(s)
Luminescent Proteins/chemistry , Absorption , Anions , Photochemistry , Spectrophotometry/methods , Static Electricity , Red Fluorescent Protein
19.
Phys Rev Lett ; 87(22): 228102, 2001 Nov 26.
Article in English | MEDLINE | ID: mdl-11736429

ABSTRACT

A sensitive photoabsorption technique for studies of gas-phase biomolecules has been used at the ELISA electrostatic heavy-ion storage ring. We show that the anion form of the chromophore of the green fluorescent protein in vacuo has an absorption maximum at 479 nm, which coincides with one of the two absorption peaks of the protein. Its absorption characteristics are therefore ascribed to intrinsic chemical properties of the chromophore. Evidently, the special beta-can structure of the protein provides shielding of the chromophore from the surroundings without significantly changing the electronic structure of the chromophore through interactions with amino acid side chains.


Subject(s)
Luminescent Proteins/chemistry , Anions , Enzyme-Linked Immunosorbent Assay , Gases , Green Fluorescent Proteins , Spectrophotometry, Ultraviolet , Static Electricity , Vacuum
20.
JAMA ; 285(10): 1316-21, 2001 Mar 14.
Article in English | MEDLINE | ID: mdl-11255386

ABSTRACT

CONTEXT: Hospital-based studies have found that increased susceptibility to certain infections is associated with low serum levels of mannose-binding lectin (MBL) due to MBL variant alleles. However, the contribution of MBL insufficiency to incidence of common childhood infections at a population level is unknown. OBJECTIVE: To investigate the effect of MBL insufficiency on risk for acute respiratory tract infection (ARI) in unselected children younger than 2 years. DESIGN AND SETTING: Population-based, prospective, cohort study conducted in Sisimiut, Greenland. PARTICIPANTS: Two hundred fifty-two children younger than 2 years who were followed up weekly between August 1996 and August 1998 for morbidity surveillance. MAIN OUTCOME MEASURE: Risk of ARI, based on medical history and clinical examination, compared by MBL genotype, determined from blood samples based on presence of structural and promoter alleles. RESULTS: A 2.08-fold (95% confidence interval [CI], 1.41-3.06) increased relative risk (RR) of ARI was found in MBL-insufficient children (n = 13) compared with MBL-sufficient children (n = 239; P<.001). The risk association was largely restricted to children aged 6 to 17 months (RR, 2.92; 95% CI, 1.78-4.79) while less effect (RR, 1.47; 95% CI, 0.45-4.82) and no effect (RR, 1.00; 95% CI, 0.42-2.37) was shown among children aged 0 to 5 months and 18 to 23 months, respectively. CONCLUSION: These data suggest that genetic factors such as MBL insufficiency play an important role in host defense, particularly during the vulnerable period of childhood from age 6 through 17 months, when the adaptive immune system is immature.


Subject(s)
Carrier Proteins/blood , Respiratory Tract Infections/blood , Respiratory Tract Infections/epidemiology , Acute Disease , Alleles , Asian People/genetics , Carrier Proteins/genetics , Female , Genotype , Greenland/epidemiology , Humans , Infant , Inuit/genetics , Male , Mannose-Binding Lectins , Prospective Studies , Risk Factors , White People/genetics
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